HEADER RNA 30-OCT-08 3F2T TITLE CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, IRIDIUM HEXAMINE TITLE 2 SOAK. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMN RIBOSWITCH; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIBED RNA FROM THE FUSOBACTERIUM SOURCE 4 NUCLEATUM IMPX GENE KEYWDS FMN RIBOSWITCH, TRANSCRIPTION, RNA EXPDTA X-RAY DIFFRACTION AUTHOR A.A.SERGANOV,L.HUANG REVDAT 5 27-DEC-23 3F2T 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 3F2T 1 VERSN REVDAT 3 17-MAR-09 3F2T 1 JRNL REVDAT 2 03-MAR-09 3F2T 1 JRNL REVDAT 1 27-JAN-09 3F2T 0 JRNL AUTH A.SERGANOV,L.HUANG,D.J.PATEL JRNL TITL COENZYME RECOGNITION AND GENE REGULATION BY A FLAVIN JRNL TITL 2 MONONUCLEOTIDE RIBOSWITCH. JRNL REF NATURE V. 458 233 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19169240 JRNL DOI 10.1038/NATURE07642 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 8073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.4570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 2343 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.2 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.05000 REMARK 3 B22 (A**2) : -3.05000 REMARK 3 B33 (A**2) : 4.58000 REMARK 3 B12 (A**2) : -1.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.428 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.416 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.153 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2729 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4316 ; 0.989 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 545 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1153 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1063 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1636 ; 0.281 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 82 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.117 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2908 ; 0.872 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4316 ; 1.389 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 9 REMARK 3 RESIDUE RANGE : X 85 X 112 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7205 30.2298 15.7936 REMARK 3 T TENSOR REMARK 3 T11: -0.6082 T22: 0.0342 REMARK 3 T33: 0.4433 T12: -0.0106 REMARK 3 T13: 0.1017 T23: 0.0875 REMARK 3 L TENSOR REMARK 3 L11: 10.5879 L22: 2.0081 REMARK 3 L33: 2.6357 L12: 1.1905 REMARK 3 L13: 1.0539 L23: 0.2911 REMARK 3 S TENSOR REMARK 3 S11: -0.1970 S12: -0.1892 S13: -1.8726 REMARK 3 S21: 0.0896 S22: 0.2108 S23: 0.6554 REMARK 3 S31: 0.3501 S32: -0.6824 S33: -0.0139 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 10 X 30 REMARK 3 ORIGIN FOR THE GROUP (A): 45.0746 42.6143 9.0443 REMARK 3 T TENSOR REMARK 3 T11: -0.6783 T22: -0.0075 REMARK 3 T33: -0.0848 T12: -0.1131 REMARK 3 T13: 0.0489 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 5.2891 L22: 2.2415 REMARK 3 L33: 8.1593 L12: -2.6793 REMARK 3 L13: -2.1983 L23: -0.4600 REMARK 3 S TENSOR REMARK 3 S11: 0.2155 S12: 0.1983 S13: -0.0093 REMARK 3 S21: -0.1608 S22: -0.1576 S23: -0.2691 REMARK 3 S31: -0.2567 S32: 1.0433 S33: -0.0579 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 31 X 48 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5030 47.6843 17.5517 REMARK 3 T TENSOR REMARK 3 T11: -0.3436 T22: -0.3024 REMARK 3 T33: -0.1054 T12: 0.1475 REMARK 3 T13: 0.0537 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 6.7317 L22: 6.5415 REMARK 3 L33: 1.3564 L12: -1.2658 REMARK 3 L13: 1.3808 L23: -0.2580 REMARK 3 S TENSOR REMARK 3 S11: 0.1812 S12: -0.4000 S13: -0.4149 REMARK 3 S21: 1.2651 S22: -0.1179 S23: 0.2808 REMARK 3 S31: -0.6972 S32: -0.9139 S33: -0.0633 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 49 X 60 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6131 33.9205 34.8637 REMARK 3 T TENSOR REMARK 3 T11: 0.3712 T22: 0.4483 REMARK 3 T33: 0.6232 T12: -0.0374 REMARK 3 T13: -0.0043 T23: -0.0678 REMARK 3 L TENSOR REMARK 3 L11: 1.0043 L22: 16.8405 REMARK 3 L33: 0.4285 L12: 4.1126 REMARK 3 L13: 0.6560 L23: 2.6863 REMARK 3 S TENSOR REMARK 3 S11: -1.0981 S12: -1.4964 S13: -1.1063 REMARK 3 S21: 2.2019 S22: 0.4964 S23: 2.3528 REMARK 3 S31: -0.8256 S32: 1.7357 S33: 0.6017 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 61 X 84 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6258 60.3695 14.8459 REMARK 3 T TENSOR REMARK 3 T11: -0.0268 T22: -0.3309 REMARK 3 T33: 0.0029 T12: 0.1699 REMARK 3 T13: 0.0542 T23: -0.0538 REMARK 3 L TENSOR REMARK 3 L11: 6.8620 L22: 5.1993 REMARK 3 L33: 3.3696 L12: -2.6174 REMARK 3 L13: 2.0990 L23: 0.4221 REMARK 3 S TENSOR REMARK 3 S11: -0.6494 S12: -0.5888 S13: 0.4213 REMARK 3 S21: 0.7442 S22: 0.5045 S23: 0.3633 REMARK 3 S31: -1.4826 S32: -0.6198 S33: 0.1449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-07; 02-DEC-07; 02-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y REMARK 200 RADIATION SOURCE : APS; APS; APS REMARK 200 BEAMLINE : 24-ID-C; 24-ID-C; 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.105275; 1.085914; 1.105462 REMARK 200 MONOCHROMATOR : NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315; ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8529 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; MAD; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES-NA PH 6.5 10% PEG4000 0.1 M REMARK 280 MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.23933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.47867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.47867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.23933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U X 54 REMARK 465 U X 55 REMARK 465 U X 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A X 53 N9 C8 N7 C5 C6 N6 N1 REMARK 470 A X 53 C2 N3 C4 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG X 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U X 89 O4 REMARK 620 2 A X 92 OP2 91.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN X 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K X 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI X 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI X 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI X 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI X 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI X 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI X 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI X 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI X 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI X 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI X 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IRI X 411 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F2Q RELATED DB: PDB REMARK 900 FMN BOUND, NATIVE DATA SET REMARK 900 RELATED ID: 3F2W RELATED DB: PDB REMARK 900 FMN BOUND, BARIUM SOAK REMARK 900 RELATED ID: 3F2X RELATED DB: PDB REMARK 900 FMN BOUND, CESIUM SOAK REMARK 900 RELATED ID: 3F2Y RELATED DB: PDB REMARK 900 FMN BOUND, MANGANESE SOAK REMARK 900 RELATED ID: 3F30 RELATED DB: PDB REMARK 900 FMN BOUND, COBALT SOAK REMARK 900 RELATED ID: 3F4E RELATED DB: PDB REMARK 900 FMN BOUND, NATIVE DATA SET, SPLIT RNA REMARK 900 RELATED ID: 3F4G RELATED DB: PDB REMARK 900 RIBOFLAVIN BOUND, NATIVE DATA SET, SPLIT RNA REMARK 900 RELATED ID: 3F4H RELATED DB: PDB REMARK 900 ROSEOFLAVIN BOUND DBREF 3F2T X 3 109 GB 20095250 AE009951 2495 2601 SEQADV 3F2T GTP X 1 GB 20095250 INSERTION SEQADV 3F2T G X 2 GB 20095250 INSERTION SEQADV 3F2T U X 110 GB 20095250 INSERTION SEQADV 3F2T U X 111 GB 20095250 INSERTION SEQADV 3F2T CCC X 112 GB 20095250 INSERTION SEQRES 1 X 112 GTP G A U C U U C G G G G C SEQRES 2 X 112 A G G G U G A A A U U C C SEQRES 3 X 112 C G A C C G G U G G U A U SEQRES 4 X 112 A G U C C A C G A A A G U SEQRES 5 X 112 A U U U G C U U U G A U U SEQRES 6 X 112 U G G U G A A A U U C C A SEQRES 7 X 112 A A A C C G A C A G U A G SEQRES 8 X 112 A G U C U G G A U G A G A SEQRES 9 X 112 G A A G A U U CCC MODRES 3F2T GTP X 1 G GUANOSINE-5'-TRIPHOSPHATE MODRES 3F2T CCC X 112 C HET GTP X 1 32 HET CCC X 112 23 HET FMN X 200 31 HET K X 300 1 HET MG X 303 1 HET MG X 304 1 HET MG X 305 1 HET MG X 307 1 HET MG X 311 1 HET MG X 313 1 HET MG X 315 1 HET IRI X 401 14 HET IRI X 402 7 HET IRI X 403 7 HET IRI X 404 7 HET IRI X 405 7 HET IRI X 406 7 HET IRI X 407 7 HET IRI X 408 7 HET IRI X 409 7 HET IRI X 410 7 HET IRI X 411 7 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETNAM IRI IRIDIUM HEXAMMINE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 1 CCC C9 H13 N3 O10 P2 FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 K K 1+ FORMUL 4 MG 7(MG 2+) FORMUL 11 IRI 11(H18 IR N6 3+) FORMUL 22 HOH *(H2 O) LINK O3' GTP X 1 P G X 2 1555 1555 1.59 LINK O3' U X 111 P CCC X 112 1555 1555 1.60 LINK O4 U X 89 MG MG X 305 1555 1555 2.01 LINK OP2 A X 92 MG MG X 305 1555 1555 2.16 LINK N7 G X 93 MG MG X 303 1555 1555 2.32 LINK O2P FMN X 200 MG MG X 304 1555 1555 2.42 SITE 1 AC1 12 G X 10 G X 11 G X 32 A X 48 SITE 2 AC1 12 A X 49 G X 62 G X 84 A X 85 SITE 3 AC1 12 G X 98 A X 99 MG X 304 IRI X 401 SITE 1 AC2 1 U X 37 SITE 1 AC3 1 G X 93 SITE 1 AC4 3 G X 33 G X 41 FMN X 200 SITE 1 AC5 2 U X 89 A X 92 SITE 1 AC6 1 G X 32 SITE 1 AC7 1 U X 6 SITE 1 AC8 8 G X 12 A X 85 C X 95 U X 96 SITE 2 AC8 8 G X 97 G X 98 A X 99 FMN X 200 SITE 1 AC9 3 U X 37 A X 38 U X 39 SITE 1 BC1 4 G X 9 G X 101 A X 102 G X 103 SITE 1 BC2 3 G X 15 G X 16 G X 17 SITE 1 BC3 5 GTP X 1 G X 2 A X 20 U X 110 SITE 2 BC3 5 U X 111 SITE 1 BC4 4 C X 46 G X 47 C X 58 U X 61 SITE 1 BC5 4 G X 41 U X 42 U X 64 C X 76 SITE 1 BC6 5 A X 38 A X 49 A X 50 G X 51 SITE 2 BC6 5 U X 52 SITE 1 BC7 3 G X 33 U X 34 A X 40 SITE 1 BC8 2 G X 70 A X 72 SITE 1 BC9 3 U X 18 G X 19 A X 21 CRYST1 71.493 71.493 138.718 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013987 0.008076 0.000000 0.00000 SCALE2 0.000000 0.016151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007209 0.00000 HETATM 1 PG GTP X 1 -1.158 36.963 15.825 1.00150.09 P HETATM 2 O1G GTP X 1 -2.153 36.359 14.854 1.00149.81 O HETATM 3 O2G GTP X 1 -0.123 37.766 15.064 1.00150.09 O HETATM 4 O3G GTP X 1 -0.461 35.867 16.601 1.00149.76 O HETATM 5 O3B GTP X 1 -1.968 37.931 16.838 1.00148.62 O HETATM 6 PB GTP X 1 -2.979 37.342 17.953 1.00147.04 P HETATM 7 O1B GTP X 1 -2.473 37.665 19.340 1.00146.95 O HETATM 8 O2B GTP X 1 -3.174 35.852 17.783 1.00147.14 O HETATM 9 O3A GTP X 1 -4.355 38.132 17.699 1.00145.47 O HETATM 10 PA GTP X 1 -5.742 37.318 17.654 1.00144.40 P HETATM 11 O1A GTP X 1 -5.872 36.630 16.316 1.00144.49 O HETATM 12 O2A GTP X 1 -6.931 38.217 17.926 1.00144.22 O HETATM 13 O5' GTP X 1 -5.565 36.208 18.805 1.00142.65 O HETATM 14 C5' GTP X 1 -5.614 36.558 20.168 1.00140.12 C HETATM 15 C4' GTP X 1 -6.707 35.743 20.838 1.00138.05 C HETATM 16 O4' GTP X 1 -7.872 35.770 20.044 1.00137.39 O HETATM 17 C3' GTP X 1 -6.344 34.274 20.925 1.00137.36 C HETATM 18 O3' GTP X 1 -5.596 33.976 22.087 1.00136.61 O HETATM 19 C2' GTP X 1 -7.670 33.528 20.889 1.00137.33 C HETATM 20 O2' GTP X 1 -8.284 33.556 22.163 1.00137.50 O HETATM 21 C1' GTP X 1 -8.437 34.468 19.953 1.00136.69 C HETATM 22 N9 GTP X 1 -8.398 33.953 18.557 1.00136.13 N HETATM 23 C8 GTP X 1 -7.803 34.557 17.478 1.00135.53 C HETATM 24 N7 GTP X 1 -7.978 33.780 16.383 1.00135.20 N HETATM 25 C5 GTP X 1 -8.681 32.683 16.739 1.00135.15 C HETATM 26 C6 GTP X 1 -9.129 31.580 16.017 1.00134.76 C HETATM 27 O6 GTP X 1 -8.896 31.489 14.815 1.00135.09 O HETATM 28 N1 GTP X 1 -9.840 30.588 16.657 1.00134.58 N HETATM 29 C2 GTP X 1 -10.102 30.693 18.008 1.00134.74 C HETATM 30 N2 GTP X 1 -10.785 29.738 18.628 1.00135.04 N HETATM 31 N3 GTP X 1 -9.657 31.791 18.720 1.00135.01 N HETATM 32 C4 GTP X 1 -8.956 32.776 18.100 1.00135.51 C