HEADER RNA 30-OCT-08 3F2W TITLE CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, BA2+ SOAK. COMPND MOL_ID: 1; COMPND 2 MOLECULE: FMN RIBOSWITCH; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIBED RNA FROM THE FUCOBACTERIUM SOURCE 4 NUCLEATUM IMPX GENE KEYWDS FMN, RIBOSWITCH, TRANSCRIPTION, BARIUM, RNA EXPDTA X-RAY DIFFRACTION AUTHOR A.A.SERGANOV,L.HUANG REVDAT 5 06-SEP-23 3F2W 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 3F2W 1 VERSN REVDAT 3 17-MAR-09 3F2W 1 JRNL REVDAT 2 03-MAR-09 3F2W 1 JRNL REVDAT 1 27-JAN-09 3F2W 0 JRNL AUTH A.SERGANOV,L.HUANG,D.J.PATEL JRNL TITL COENZYME RECOGNITION AND GENE REGULATION BY A FLAVIN JRNL TITL 2 MONONUCLEOTIDE RIBOSWITCH. JRNL REF NATURE V. 458 233 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19169240 JRNL DOI 10.1038/NATURE07642 REMARK 2 REMARK 2 RESOLUTION. 3.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 5385 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 258 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 359 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 2353 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 110.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.61000 REMARK 3 B22 (A**2) : -2.61000 REMARK 3 B33 (A**2) : 3.92000 REMARK 3 B12 (A**2) : -1.31000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.511 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.343 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 40.683 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2671 ; 0.004 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4155 ; 1.043 ; 3.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 546 ; 0.047 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1164 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1018 ; 0.160 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1604 ; 0.277 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 63 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 13 ; 0.206 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.092 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2984 ; 0.387 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4155 ; 0.654 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 9 REMARK 3 RESIDUE RANGE : X 85 X 112 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5045 30.3660 15.5021 REMARK 3 T TENSOR REMARK 3 T11: -0.3727 T22: -0.0927 REMARK 3 T33: 0.2934 T12: -0.0408 REMARK 3 T13: 0.0741 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 9.2031 L22: 1.8652 REMARK 3 L33: 2.0355 L12: 0.7382 REMARK 3 L13: 0.8018 L23: 0.0353 REMARK 3 S TENSOR REMARK 3 S11: 0.2089 S12: 0.0077 S13: -2.0526 REMARK 3 S21: -0.1872 S22: -0.0837 S23: 0.5486 REMARK 3 S31: 0.1837 S32: -0.5945 S33: -0.1252 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 10 X 30 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9419 42.4521 9.1412 REMARK 3 T TENSOR REMARK 3 T11: -0.4546 T22: -0.1044 REMARK 3 T33: -0.2734 T12: -0.0890 REMARK 3 T13: 0.0964 T23: -0.1393 REMARK 3 L TENSOR REMARK 3 L11: 10.2192 L22: 1.8408 REMARK 3 L33: 5.1677 L12: -1.0334 REMARK 3 L13: -0.8870 L23: -0.9087 REMARK 3 S TENSOR REMARK 3 S11: 0.1843 S12: 0.5813 S13: -0.7361 REMARK 3 S21: -0.2488 S22: -0.3457 S23: -0.2194 REMARK 3 S31: -0.1646 S32: 0.7462 S33: 0.1614 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 31 X 48 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3495 47.6858 17.4565 REMARK 3 T TENSOR REMARK 3 T11: -0.3856 T22: -0.1337 REMARK 3 T33: -0.3193 T12: 0.1027 REMARK 3 T13: 0.1606 T23: -0.0881 REMARK 3 L TENSOR REMARK 3 L11: 3.2039 L22: 3.3640 REMARK 3 L33: 5.6342 L12: 2.1977 REMARK 3 L13: 0.3607 L23: -2.3347 REMARK 3 S TENSOR REMARK 3 S11: 0.1177 S12: -0.4614 S13: -0.0573 REMARK 3 S21: 0.7761 S22: 0.1035 S23: 0.4351 REMARK 3 S31: -0.5093 S32: -0.6140 S33: -0.2212 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 49 X 60 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1357 33.4764 35.0469 REMARK 3 T TENSOR REMARK 3 T11: 0.5777 T22: 0.1885 REMARK 3 T33: 0.2175 T12: -0.0580 REMARK 3 T13: 0.0441 T23: 0.3560 REMARK 3 L TENSOR REMARK 3 L11: 11.8563 L22: 5.9221 REMARK 3 L33: 8.5756 L12: 4.8018 REMARK 3 L13: -8.7706 L23: -1.9035 REMARK 3 S TENSOR REMARK 3 S11: 0.1826 S12: -1.9251 S13: -1.1013 REMARK 3 S21: 1.7363 S22: -0.4489 S23: 1.8328 REMARK 3 S31: -1.1436 S32: 0.2758 S33: 0.2662 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 61 X 84 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4772 60.3776 14.7573 REMARK 3 T TENSOR REMARK 3 T11: -0.0646 T22: -0.3079 REMARK 3 T33: -0.3505 T12: 0.1187 REMARK 3 T13: 0.1840 T23: -0.1462 REMARK 3 L TENSOR REMARK 3 L11: 8.5759 L22: 7.3064 REMARK 3 L33: 3.2946 L12: -2.0587 REMARK 3 L13: 3.0166 L23: -0.9942 REMARK 3 S TENSOR REMARK 3 S11: -0.5811 S12: -0.3266 S13: 1.1254 REMARK 3 S21: 0.8839 S22: 0.3549 S23: 0.1306 REMARK 3 S31: -1.1412 S32: -0.4555 S33: 0.2262 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F2W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.6 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5691 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3F2Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES-NA PH 6.5 10% PEG 4000 0.1 M REMARK 280 MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.58167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.16333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.16333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.58167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U X 54 REMARK 465 U X 55 REMARK 465 U X 56 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN X 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG X 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BA X 416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F2Q RELATED DB: PDB REMARK 900 FMN BOUND, NATIVE DATA SET REMARK 900 RELATED ID: 3F2T RELATED DB: PDB REMARK 900 FMN BOUND, IRIDIUM SOAK REMARK 900 RELATED ID: 3F2X RELATED DB: PDB REMARK 900 FMN BOUND, CESIUM SOAK REMARK 900 RELATED ID: 3F2Y RELATED DB: PDB REMARK 900 FMN BOUND, MANGANESE SOAK REMARK 900 RELATED ID: 3F30 RELATED DB: PDB REMARK 900 FMN BOUND, COBALT SOAK REMARK 900 RELATED ID: 3F4E RELATED DB: PDB REMARK 900 FMN BOUND, NATIVE DATA SET, SPLIT RNA REMARK 900 RELATED ID: 3F4G RELATED DB: PDB REMARK 900 RIBOFLAVIN BOUND, NATIVE DATA SET, SPLIT RNA REMARK 900 RELATED ID: 3F4H RELATED DB: PDB REMARK 900 ROSEOFLAVIN BOUND DBREF 3F2W X 3 109 GB 20095250 AE009951 2495 2601 SEQADV 3F2W GTP X 1 GB 20095250 INSERTION SEQADV 3F2W G X 2 GB 20095250 INSERTION SEQADV 3F2W U X 110 GB 20095250 INSERTION SEQADV 3F2W U X 111 GB 20095250 INSERTION SEQADV 3F2W CCC X 112 GB 20095250 INSERTION SEQRES 1 X 112 GTP G A U C U U C G G G G C SEQRES 2 X 112 A G G G U G A A A U U C C SEQRES 3 X 112 C G A C C G G U G G U A U SEQRES 4 X 112 A G U C C A C G A A A G U SEQRES 5 X 112 A U U U G C U U U G A U U SEQRES 6 X 112 U G G U G A A A U U C C A SEQRES 7 X 112 A A A C C G A C A G U A G SEQRES 8 X 112 A G U C U G G A U G A G A SEQRES 9 X 112 G A A G A U U CCC MODRES 3F2W GTP X 1 G GUANOSINE-5'-TRIPHOSPHATE MODRES 3F2W CCC X 112 C HET GTP X 1 32 HET CCC X 112 23 HET FMN X 200 31 HET MG X 302 1 HET MG X 309 1 HET MG X 311 1 HET MG X 313 1 HET MG X 314 1 HET MG X 315 1 HET MG X 316 1 HET BA X 401 1 HET BA X 402 1 HET BA X 403 1 HET BA X 404 1 HET BA X 405 1 HET BA X 406 1 HET BA X 407 1 HET BA X 408 1 HET BA X 409 1 HET BA X 410 1 HET BA X 411 1 HET BA X 412 1 HET BA X 413 1 HET BA X 414 1 HET BA X 415 1 HET BA X 416 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MG MAGNESIUM ION HETNAM BA BARIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 1 CCC C9 H13 N3 O10 P2 FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 MG 7(MG 2+) FORMUL 10 BA 16(BA 2+) FORMUL 26 HOH *(H2 O) LINK O3' GTP X 1 P G X 2 1555 1555 1.60 LINK O3' U X 111 P CCC X 112 1555 1555 1.60 SITE 1 AC1 11 G X 10 G X 11 G X 32 A X 48 SITE 2 AC1 11 A X 49 G X 62 G X 84 A X 85 SITE 3 AC1 11 G X 98 A X 99 BA X 402 SITE 1 AC2 1 G X 68 SITE 1 AC3 1 G X 41 SITE 1 AC4 1 G X 91 SITE 1 AC5 3 U X 96 G X 97 BA X 412 SITE 1 AC6 4 G X 33 G X 41 G X 62 FMN X 200 SITE 1 AC7 2 U X 100 G X 101 SITE 1 AC8 3 G X 9 G X 101 A X 102 SITE 1 AC9 1 GTP X 1 SITE 1 BC1 1 G X 19 SITE 1 BC2 2 G X 16 G X 17 SITE 1 BC3 1 G X 28 SITE 1 BC4 1 G X 93 SITE 1 BC5 1 BA X 401 SITE 1 BC6 3 G X 35 G X 36 A X 40 SITE 1 BC7 1 G X 70 SITE 1 BC8 2 G X 51 U X 52 SITE 1 BC9 3 G X 88 U X 89 A X 92 CRYST1 71.003 71.003 139.745 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014084 0.008131 0.000000 0.00000 SCALE2 0.000000 0.016263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007156 0.00000 HETATM 1 PG GTP X 1 -2.749 35.473 15.280 1.00137.48 P HETATM 2 O1G GTP X 1 -2.379 34.079 15.875 1.00137.33 O HETATM 3 O2G GTP X 1 -4.276 35.539 14.982 1.00137.30 O HETATM 4 O3G GTP X 1 -1.936 35.735 13.981 1.00137.46 O HETATM 5 O3B GTP X 1 -2.351 36.606 16.361 1.00136.61 O HETATM 6 PB GTP X 1 -3.109 36.740 17.779 1.00135.58 P HETATM 7 O1B GTP X 1 -2.521 37.888 18.573 1.00135.28 O HETATM 8 O2B GTP X 1 -3.027 35.447 18.562 1.00135.62 O HETATM 9 O3A GTP X 1 -4.630 37.092 17.372 1.00134.32 O HETATM 10 PA GTP X 1 -5.652 37.639 18.489 1.00133.09 P HETATM 11 O1A GTP X 1 -7.076 37.542 17.991 1.00133.04 O HETATM 12 O2A GTP X 1 -5.312 39.054 18.893 1.00133.39 O HETATM 13 O5' GTP X 1 -5.396 36.610 19.697 1.00131.52 O HETATM 14 C5' GTP X 1 -5.885 36.844 20.996 1.00129.04 C HETATM 15 C4' GTP X 1 -6.738 35.653 21.404 1.00127.24 C HETATM 16 O4' GTP X 1 -7.873 35.555 20.569 1.00126.57 O HETATM 17 C3' GTP X 1 -6.046 34.318 21.177 1.00126.21 C HETATM 18 O3' GTP X 1 -5.067 33.964 22.139 1.00125.01 O HETATM 19 C2' GTP X 1 -7.188 33.316 21.093 1.00126.23 C HETATM 20 O2' GTP X 1 -7.728 33.058 22.372 1.00126.36 O HETATM 21 C1' GTP X 1 -8.143 34.193 20.282 1.00125.83 C HETATM 22 N9 GTP X 1 -7.912 33.850 18.861 1.00125.60 N HETATM 23 C8 GTP X 1 -7.099 34.488 17.956 1.00125.38 C HETATM 24 N7 GTP X 1 -7.153 33.832 16.775 1.00125.24 N HETATM 25 C5 GTP X 1 -7.981 32.774 16.913 1.00125.35 C HETATM 26 C6 GTP X 1 -8.394 31.781 16.034 1.00125.35 C HETATM 27 O6 GTP X 1 -7.973 31.781 14.878 1.00125.42 O HETATM 28 N1 GTP X 1 -9.270 30.799 16.461 1.00125.37 N HETATM 29 C2 GTP X 1 -9.730 30.814 17.764 1.00125.23 C HETATM 30 N2 GTP X 1 -10.572 29.882 18.194 1.00125.33 N HETATM 31 N3 GTP X 1 -9.318 31.804 18.632 1.00125.31 N HETATM 32 C4 GTP X 1 -8.459 32.769 18.217 1.00125.42 C