HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-OCT-08 3F42 TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN HP0035 FROM HELICOBACTER TITLE 2 PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN HP0035; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 4 ORGANISM_TAXID: 210; SOURCE 5 GENE: HP_0035; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVE KEYWDS HELICOBACTER PYLORI UNKNOWN-FUNCTION, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,M.KUDRITSKA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 27-DEC-23 3F42 1 REMARK LINK REVDAT 3 13-JUL-11 3F42 1 VERSN REVDAT 2 24-FEB-09 3F42 1 VERSN REVDAT 1 18-NOV-08 3F42 0 JRNL AUTH C.CHANG,M.KUDRITSKA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN HP0035 FROM JRNL TITL 2 HELICOBACTER PYLORI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 19143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 982 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1312 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1330 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 29.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.41000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.940 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1415 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1898 ; 1.373 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 192 ; 4.523 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;39.573 ;27.536 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 273 ;13.194 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;14.438 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 209 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1059 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 895 ; 0.879 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1415 ; 1.585 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 520 ; 2.779 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 475 ; 4.409 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 24 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9625 46.2955 -3.9623 REMARK 3 T TENSOR REMARK 3 T11: 0.0210 T22: 0.0282 REMARK 3 T33: 0.0701 T12: -0.0205 REMARK 3 T13: -0.0306 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 0.9350 L22: 9.2069 REMARK 3 L33: 1.1736 L12: 2.9033 REMARK 3 L13: -0.8978 L23: -2.5433 REMARK 3 S TENSOR REMARK 3 S11: -0.1061 S12: 0.0974 S13: 0.0590 REMARK 3 S21: -0.3094 S22: 0.2476 S23: 0.1137 REMARK 3 S31: 0.1215 S32: -0.1612 S33: -0.1415 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3397 20.1032 9.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.0485 T22: 0.0149 REMARK 3 T33: 0.0280 T12: -0.0160 REMARK 3 T13: -0.0166 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.5465 L22: 2.7154 REMARK 3 L33: 1.6649 L12: -0.5317 REMARK 3 L13: 0.0702 L23: -1.0316 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: 0.0692 S13: -0.0574 REMARK 3 S21: -0.1817 S22: 0.1235 S23: -0.0817 REMARK 3 S31: 0.2011 S32: -0.0581 S33: -0.1063 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1243 16.7598 21.3262 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.0425 REMARK 3 T33: 0.0510 T12: 0.0239 REMARK 3 T13: -0.0304 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.2930 L22: 2.4539 REMARK 3 L33: 3.1087 L12: 0.4652 REMARK 3 L13: -0.7699 L23: -1.9211 REMARK 3 S TENSOR REMARK 3 S11: -0.0596 S12: -0.2531 S13: -0.0978 REMARK 3 S21: 0.0684 S22: 0.0751 S23: -0.2299 REMARK 3 S31: 0.1649 S32: 0.0456 S33: -0.0155 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0168 34.6533 3.0733 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.0224 REMARK 3 T33: 0.0644 T12: 0.0106 REMARK 3 T13: 0.0125 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 3.5932 L22: 4.9201 REMARK 3 L33: 3.7599 L12: -0.3130 REMARK 3 L13: -0.9604 L23: -2.9912 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: 0.0785 S13: 0.0669 REMARK 3 S21: -0.1986 S22: 0.0598 S23: -0.1306 REMARK 3 S31: 0.2131 S32: 0.1116 S33: -0.0927 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 24 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4450 45.5562 12.4177 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.0519 REMARK 3 T33: 0.1848 T12: 0.0075 REMARK 3 T13: -0.0434 T23: -0.0764 REMARK 3 L TENSOR REMARK 3 L11: 6.7201 L22: 3.8946 REMARK 3 L33: 10.4001 L12: 3.6418 REMARK 3 L13: -2.4503 L23: -5.5739 REMARK 3 S TENSOR REMARK 3 S11: 0.0766 S12: -0.3182 S13: 0.0607 REMARK 3 S21: 0.1669 S22: -0.2362 S23: -0.1042 REMARK 3 S31: -0.2030 S32: 0.3066 S33: 0.1596 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 55 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3180 28.3291 25.5941 REMARK 3 T TENSOR REMARK 3 T11: 0.0611 T22: 0.1012 REMARK 3 T33: 0.0360 T12: 0.0005 REMARK 3 T13: -0.0243 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 3.1162 L22: 2.2763 REMARK 3 L33: 3.2489 L12: 0.5277 REMARK 3 L13: -1.2010 L23: -0.5104 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: -0.5049 S13: 0.1393 REMARK 3 S21: 0.2541 S22: -0.0853 S23: -0.2220 REMARK 3 S31: -0.2709 S32: 0.1428 S33: -0.0462 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 56 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6705 22.2562 20.4089 REMARK 3 T TENSOR REMARK 3 T11: 0.0105 T22: 0.0511 REMARK 3 T33: 0.0024 T12: 0.0111 REMARK 3 T13: -0.0021 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 3.3654 L22: 4.1439 REMARK 3 L33: 1.1930 L12: 1.9744 REMARK 3 L13: -0.5065 L23: -0.7490 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: -0.1191 S13: -0.0305 REMARK 3 S21: 0.0227 S22: 0.0491 S23: -0.0182 REMARK 3 S31: 0.0283 S32: -0.1473 S33: -0.0414 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4508 44.0340 13.7844 REMARK 3 T TENSOR REMARK 3 T11: 0.0593 T22: 0.0224 REMARK 3 T33: 0.0434 T12: 0.0024 REMARK 3 T13: 0.0080 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.0181 L22: 9.2949 REMARK 3 L33: 4.8382 L12: -0.2627 REMARK 3 L13: -0.0095 L23: -6.1333 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: -0.1717 S13: 0.3978 REMARK 3 S21: 0.5939 S22: -0.0708 S23: -0.0957 REMARK 3 S31: -0.4394 S32: -0.0463 S33: 0.0063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19185 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 50.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4K,0.2M AMMONIUM ACETATE, 0.1M REMARK 280 SODIUM CITRATE PH5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.59800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 22.59800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.56450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.78300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.56450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.78300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.59800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.56450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.78300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 22.59800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.56450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.78300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TETRAMER BY VECTOR (X,Y,Z),(X,1-Y,-Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 99.56600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 102 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ASN A 93 REMARK 465 PHE A 94 REMARK 465 ALA A 95 REMARK 465 LYS A 96 REMARK 465 LEU A 97 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 PHE B 3 REMARK 465 SER B 4 REMARK 465 GLN B 5 REMARK 465 LEU B 6 REMARK 465 GLY B 7 REMARK 465 GLY B 92 REMARK 465 ASN B 93 REMARK 465 PHE B 94 REMARK 465 ALA B 95 REMARK 465 LYS B 96 REMARK 465 LEU B 97 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ASN B 24 CG OD1 ND2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 MSE B 90 CG SE CE REMARK 470 LEU B 91 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 29 O HOH A 112 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 54 OD2 ASP B 54 3556 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 20 44.87 -78.75 REMARK 500 ASP B 60 80.82 -150.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7762 RELATED DB: TARGETDB DBREF 3F42 A 1 97 UNP O24876 Y035_HELPY 1 97 DBREF 3F42 B 1 97 UNP O24876 Y035_HELPY 1 97 SEQADV 3F42 GLY A -1 UNP O24876 EXPRESSION TAG SEQADV 3F42 HIS A 0 UNP O24876 EXPRESSION TAG SEQADV 3F42 GLY B -1 UNP O24876 EXPRESSION TAG SEQADV 3F42 HIS B 0 UNP O24876 EXPRESSION TAG SEQRES 1 A 99 GLY HIS MSE ASP PHE SER GLN LEU GLY GLY LEU LEU ASP SEQRES 2 A 99 GLY MSE LYS LYS GLU PHE SER GLN LEU GLU GLU LYS ASN SEQRES 3 A 99 LYS ASP THR ILE HIS THR SER LYS SER GLY GLY GLY MSE SEQRES 4 A 99 VAL SER VAL SER PHE ASN GLY LEU GLY GLU LEU VAL ASP SEQRES 5 A 99 LEU GLN ILE ASP ASP SER LEU LEU GLU ASP LYS GLU ALA SEQRES 6 A 99 MSE GLN ILE TYR LEU MSE SER ALA LEU ASN ASP GLY TYR SEQRES 7 A 99 LYS ALA VAL GLU GLU ASN ARG LYS ASN LEU ALA PHE ASN SEQRES 8 A 99 MSE LEU GLY ASN PHE ALA LYS LEU SEQRES 1 B 99 GLY HIS MSE ASP PHE SER GLN LEU GLY GLY LEU LEU ASP SEQRES 2 B 99 GLY MSE LYS LYS GLU PHE SER GLN LEU GLU GLU LYS ASN SEQRES 3 B 99 LYS ASP THR ILE HIS THR SER LYS SER GLY GLY GLY MSE SEQRES 4 B 99 VAL SER VAL SER PHE ASN GLY LEU GLY GLU LEU VAL ASP SEQRES 5 B 99 LEU GLN ILE ASP ASP SER LEU LEU GLU ASP LYS GLU ALA SEQRES 6 B 99 MSE GLN ILE TYR LEU MSE SER ALA LEU ASN ASP GLY TYR SEQRES 7 B 99 LYS ALA VAL GLU GLU ASN ARG LYS ASN LEU ALA PHE ASN SEQRES 8 B 99 MSE LEU GLY ASN PHE ALA LYS LEU MODRES 3F42 MSE A 1 MET SELENOMETHIONINE MODRES 3F42 MSE A 13 MET SELENOMETHIONINE MODRES 3F42 MSE A 37 MET SELENOMETHIONINE MODRES 3F42 MSE A 64 MET SELENOMETHIONINE MODRES 3F42 MSE A 69 MET SELENOMETHIONINE MODRES 3F42 MSE A 90 MET SELENOMETHIONINE MODRES 3F42 MSE B 13 MET SELENOMETHIONINE MODRES 3F42 MSE B 37 MET SELENOMETHIONINE MODRES 3F42 MSE B 64 MET SELENOMETHIONINE MODRES 3F42 MSE B 69 MET SELENOMETHIONINE MODRES 3F42 MSE B 90 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 13 8 HET MSE A 37 13 HET MSE A 64 8 HET MSE A 69 8 HET MSE A 90 8 HET MSE B 13 8 HET MSE B 37 8 HET MSE B 64 8 HET MSE B 69 8 HET MSE B 90 5 HET EDO A 101 4 HET EDO A 103 4 HET EDO B 102 4 HET EDO B 101 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *142(H2 O) HELIX 1 1 ASP A 2 ASP A 26 1 25 HELIX 2 2 GLY A 34 GLY A 36 5 3 HELIX 3 3 ASP A 55 GLU A 59 5 5 HELIX 4 4 ASP A 60 GLY A 92 1 33 HELIX 5 5 GLY B 8 SER B 18 1 11 HELIX 6 6 SER B 18 LYS B 23 1 6 HELIX 7 7 ASN B 24 ASP B 26 5 3 HELIX 8 8 ASP B 55 GLU B 59 5 5 HELIX 9 9 ASP B 60 LEU B 91 1 32 SHEET 1 A 3 ILE A 28 SER A 33 0 SHEET 2 A 3 VAL A 38 ASN A 43 -1 O PHE A 42 N HIS A 29 SHEET 3 A 3 LEU A 48 ILE A 53 -1 O VAL A 49 N SER A 41 SHEET 1 B 3 ILE B 28 SER B 33 0 SHEET 2 B 3 VAL B 38 ASN B 43 -1 O VAL B 40 N SER B 31 SHEET 3 B 3 LEU B 48 ILE B 53 -1 O GLN B 52 N SER B 39 LINK C HIS A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ASP A 2 1555 1555 1.32 LINK C GLY A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N LYS A 14 1555 1555 1.34 LINK C GLY A 36 N MSE A 37 1555 1555 1.33 LINK C MSE A 37 N VAL A 38 1555 1555 1.34 LINK C ALA A 63 N MSE A 64 1555 1555 1.32 LINK C MSE A 64 N GLN A 65 1555 1555 1.32 LINK C LEU A 68 N MSE A 69 1555 1555 1.32 LINK C MSE A 69 N SER A 70 1555 1555 1.35 LINK C ASN A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N LEU A 91 1555 1555 1.33 LINK C GLY B 12 N MSE B 13 1555 1555 1.33 LINK C MSE B 13 N LYS B 14 1555 1555 1.34 LINK C GLY B 36 N MSE B 37 1555 1555 1.33 LINK C MSE B 37 N VAL B 38 1555 1555 1.32 LINK C ALA B 63 N MSE B 64 1555 1555 1.34 LINK C MSE B 64 N GLN B 65 1555 1555 1.33 LINK C LEU B 68 N MSE B 69 1555 1555 1.33 LINK C MSE B 69 N SER B 70 1555 1555 1.34 LINK C ASN B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N LEU B 91 1555 1555 1.34 SITE 1 AC1 4 MSE A 37 ASP A 60 TYR A 67 LYS B 14 SITE 1 AC2 5 GLU A 47 HOH A 124 HOH A 165 LYS B 77 SITE 2 AC2 5 HOH B 143 SITE 1 AC3 6 GLU A 80 HOH A 129 LEU B 45 GLY B 46 SITE 2 AC3 6 GLU B 47 HOH B 151 SITE 1 AC4 5 ASN A 73 HOH A 141 GLU B 47 LEU B 48 SITE 2 AC4 5 HOH B 104 CRYST1 87.129 99.566 45.196 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022126 0.00000