HEADER HYDROLASE 31-OCT-08 3F4A TITLE STRUCTURE OF YGR203W, A YEAST PROTEIN TYROSINE PHOSPHATASE OF THE TITLE 2 RHODANESE FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YGR203W; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: G7731, YGR203W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS PROTEIN PHOSPHATASE, RHODANESE-LIKE FAMILY, STRUCTURAL GENOMICS, PSI- KEYWDS 2 2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,X.XU,H.CUI,J.OSIPIUK,A.JOACHIMIAK,A.M.EDWARDS,A.F.YAKUNIN, AUTHOR 2 A.SAVCHENKO,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 27-DEC-23 3F4A 1 REMARK LINK REVDAT 3 25-OCT-17 3F4A 1 REMARK REVDAT 2 24-FEB-09 3F4A 1 VERSN REVDAT 1 25-NOV-08 3F4A 0 JRNL AUTH M.PROUDFOOT,G.BROWN,A.U.SINGER,X.XU,H.CUI,A.M.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK,A.SAVCHENKO,A.F.YAKUNIN JRNL TITL STRUCTURE OF YGR203W, A YEAST PROTEIN TYROSINE PHOSPHATASE JRNL TITL 2 OF THE RHODANESE FAMILY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1281 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1732 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 312 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.343 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2560 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3484 ; 1.564 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 5.372 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;33.046 ;22.093 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;15.365 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.072 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 353 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1980 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1218 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1703 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 272 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 112 ; 0.279 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 42 ; 0.236 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1546 ; 1.236 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2401 ; 1.539 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1194 ; 2.863 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1078 ; 3.899 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6962 55.1754 3.9107 REMARK 3 T TENSOR REMARK 3 T11: -0.0866 T22: -0.0891 REMARK 3 T33: -0.0520 T12: 0.0041 REMARK 3 T13: -0.0024 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 2.4872 L22: 1.3595 REMARK 3 L33: 3.5105 L12: -1.0185 REMARK 3 L13: -0.6323 L23: 0.2284 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: 0.1726 S13: -0.1349 REMARK 3 S21: 0.0215 S22: -0.1294 S23: 0.1034 REMARK 3 S31: -0.0827 S32: -0.1968 S33: 0.1192 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 148 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3787 36.3293 21.2831 REMARK 3 T TENSOR REMARK 3 T11: -0.0246 T22: -0.0626 REMARK 3 T33: -0.0685 T12: -0.0546 REMARK 3 T13: 0.0083 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.4992 L22: 1.5769 REMARK 3 L33: 1.4539 L12: 0.6386 REMARK 3 L13: 0.2365 L23: 0.5235 REMARK 3 S TENSOR REMARK 3 S11: 0.0775 S12: -0.1059 S13: 0.0825 REMARK 3 S21: 0.1358 S22: -0.1064 S23: 0.0407 REMARK 3 S31: -0.0412 S32: -0.0987 S33: 0.0289 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27354 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6820 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.29500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS 8,5, 1.5 M LISO4 PLUS 0.015 REMARK 280 MG/ML TRYPSIN. CRYOPROTECTED WITH N-PARATONE OIL, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.19100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.01250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.19100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.01250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 TYR A 4 REMARK 465 MSE B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 TYR B 4 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 VAL B 131 N CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 122 O HOH B 199 2.12 REMARK 500 OE1 GLU A 75 O HOH A 361 2.15 REMARK 500 O HOH A 359 O HOH A 364 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 -0.29 76.67 REMARK 500 CYS A 90 -137.36 -130.18 REMARK 500 CYS B 90 -141.51 -129.82 REMARK 500 GLN B 95 -64.63 -128.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 152 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 B 153 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC7727 RELATED DB: TARGETDB DBREF 3F4A A 1 148 UNP P42937 YG4E_YEAST 1 148 DBREF 3F4A B 1 148 UNP P42937 YG4E_YEAST 1 148 SEQADV 3F4A MSE A -20 UNP P42937 EXPRESSION TAG SEQADV 3F4A GLY A -19 UNP P42937 EXPRESSION TAG SEQADV 3F4A SER A -18 UNP P42937 EXPRESSION TAG SEQADV 3F4A SER A -17 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS A -16 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS A -15 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS A -14 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS A -13 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS A -12 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS A -11 UNP P42937 EXPRESSION TAG SEQADV 3F4A SER A -10 UNP P42937 EXPRESSION TAG SEQADV 3F4A SER A -9 UNP P42937 EXPRESSION TAG SEQADV 3F4A GLY A -8 UNP P42937 EXPRESSION TAG SEQADV 3F4A ARG A -7 UNP P42937 EXPRESSION TAG SEQADV 3F4A GLU A -6 UNP P42937 EXPRESSION TAG SEQADV 3F4A ASN A -5 UNP P42937 EXPRESSION TAG SEQADV 3F4A LEU A -4 UNP P42937 EXPRESSION TAG SEQADV 3F4A TYR A -3 UNP P42937 EXPRESSION TAG SEQADV 3F4A PHE A -2 UNP P42937 EXPRESSION TAG SEQADV 3F4A GLN A -1 UNP P42937 EXPRESSION TAG SEQADV 3F4A GLY A 0 UNP P42937 EXPRESSION TAG SEQADV 3F4A MSE B -20 UNP P42937 EXPRESSION TAG SEQADV 3F4A GLY B -19 UNP P42937 EXPRESSION TAG SEQADV 3F4A SER B -18 UNP P42937 EXPRESSION TAG SEQADV 3F4A SER B -17 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS B -16 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS B -15 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS B -14 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS B -13 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS B -12 UNP P42937 EXPRESSION TAG SEQADV 3F4A HIS B -11 UNP P42937 EXPRESSION TAG SEQADV 3F4A SER B -10 UNP P42937 EXPRESSION TAG SEQADV 3F4A SER B -9 UNP P42937 EXPRESSION TAG SEQADV 3F4A GLY B -8 UNP P42937 EXPRESSION TAG SEQADV 3F4A ARG B -7 UNP P42937 EXPRESSION TAG SEQADV 3F4A GLU B -6 UNP P42937 EXPRESSION TAG SEQADV 3F4A ASN B -5 UNP P42937 EXPRESSION TAG SEQADV 3F4A LEU B -4 UNP P42937 EXPRESSION TAG SEQADV 3F4A TYR B -3 UNP P42937 EXPRESSION TAG SEQADV 3F4A PHE B -2 UNP P42937 EXPRESSION TAG SEQADV 3F4A GLN B -1 UNP P42937 EXPRESSION TAG SEQADV 3F4A GLY B 0 UNP P42937 EXPRESSION TAG SEQRES 1 A 169 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 169 ARG GLU ASN LEU TYR PHE GLN GLY MSE ASP SER TYR SER SEQRES 3 A 169 ILE THR ASN VAL LYS TYR LEU ASP PRO THR GLU LEU HIS SEQRES 4 A 169 ARG TRP MSE GLN GLU GLY HIS THR THR THR LEU ARG GLU SEQRES 5 A 169 PRO PHE GLN VAL VAL ASP VAL ARG GLY SER ASP TYR MSE SEQRES 6 A 169 GLY GLY HIS ILE LYS ASP GLY TRP HIS TYR ALA TYR SER SEQRES 7 A 169 ARG LEU LYS GLN ASP PRO GLU TYR LEU ARG GLU LEU LYS SEQRES 8 A 169 HIS ARG LEU LEU GLU LYS GLN ALA ASP GLY ARG GLY ALA SEQRES 9 A 169 LEU ASN VAL ILE PHE HIS CYS MSE LEU SER GLN GLN ARG SEQRES 10 A 169 GLY PRO SER ALA ALA MSE LEU LEU LEU ARG SER LEU ASP SEQRES 11 A 169 THR ALA GLU LEU SER ARG CYS ARG LEU TRP VAL LEU ARG SEQRES 12 A 169 GLY GLY PHE SER ARG TRP GLN SER VAL TYR GLY ASP ASP SEQRES 13 A 169 GLU SER VAL THR ALA GLY TYR LEU PRO ASP LEU TRP ARG SEQRES 1 B 169 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 169 ARG GLU ASN LEU TYR PHE GLN GLY MSE ASP SER TYR SER SEQRES 3 B 169 ILE THR ASN VAL LYS TYR LEU ASP PRO THR GLU LEU HIS SEQRES 4 B 169 ARG TRP MSE GLN GLU GLY HIS THR THR THR LEU ARG GLU SEQRES 5 B 169 PRO PHE GLN VAL VAL ASP VAL ARG GLY SER ASP TYR MSE SEQRES 6 B 169 GLY GLY HIS ILE LYS ASP GLY TRP HIS TYR ALA TYR SER SEQRES 7 B 169 ARG LEU LYS GLN ASP PRO GLU TYR LEU ARG GLU LEU LYS SEQRES 8 B 169 HIS ARG LEU LEU GLU LYS GLN ALA ASP GLY ARG GLY ALA SEQRES 9 B 169 LEU ASN VAL ILE PHE HIS CYS MSE LEU SER GLN GLN ARG SEQRES 10 B 169 GLY PRO SER ALA ALA MSE LEU LEU LEU ARG SER LEU ASP SEQRES 11 B 169 THR ALA GLU LEU SER ARG CYS ARG LEU TRP VAL LEU ARG SEQRES 12 B 169 GLY GLY PHE SER ARG TRP GLN SER VAL TYR GLY ASP ASP SEQRES 13 B 169 GLU SER VAL THR ALA GLY TYR LEU PRO ASP LEU TRP ARG MODRES 3F4A MSE A 21 MET SELENOMETHIONINE MODRES 3F4A MSE A 44 MET SELENOMETHIONINE MODRES 3F4A MSE A 91 MET SELENOMETHIONINE MODRES 3F4A MSE A 102 MET SELENOMETHIONINE MODRES 3F4A MSE B 21 MET SELENOMETHIONINE MODRES 3F4A MSE B 44 MET SELENOMETHIONINE MODRES 3F4A MSE B 91 MET SELENOMETHIONINE MODRES 3F4A MSE B 102 MET SELENOMETHIONINE HET MSE A 21 8 HET MSE A 44 16 HET MSE A 91 8 HET MSE A 102 8 HET MSE B 21 8 HET MSE B 44 16 HET MSE B 91 8 HET MSE B 102 8 HET SO4 A 149 5 HET SO4 A 150 5 HET SO4 A 151 5 HET SO4 A 152 5 HET CL A 153 1 HET SO4 B 149 5 HET SO4 B 150 5 HET SO4 B 151 5 HET SO4 B 152 5 HET NH4 B 153 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM NH4 AMMONIUM ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 SO4 8(O4 S 2-) FORMUL 7 CL CL 1- FORMUL 12 NH4 H4 N 1+ FORMUL 13 HOH *312(H2 O) HELIX 1 1 ASP A 13 GLY A 24 1 12 HELIX 2 2 ALA A 55 ASP A 62 1 8 HELIX 3 3 ASP A 62 ASP A 79 1 18 HELIX 4 4 GLN A 95 SER A 107 1 13 HELIX 5 5 ASP A 109 SER A 114 1 6 HELIX 6 6 GLY A 123 GLY A 133 1 11 HELIX 7 7 LEU A 143 ARG A 148 5 6 HELIX 8 8 ASP B 13 GLY B 24 1 12 HELIX 9 9 GLY B 40 MSE B 44 5 5 HELIX 10 10 ALA B 55 ASP B 62 1 8 HELIX 11 11 ASP B 62 ASP B 79 1 18 HELIX 12 12 GLN B 95 LEU B 108 1 14 HELIX 13 13 ASP B 109 ARG B 115 1 7 HELIX 14 14 GLY B 123 GLY B 133 1 11 HELIX 15 15 LEU B 143 ARG B 148 5 6 SHEET 1 A 5 VAL A 9 LEU A 12 0 SHEET 2 A 5 CYS A 116 LEU A 121 1 O VAL A 120 N LEU A 12 SHEET 3 A 5 LEU A 84 HIS A 89 1 N VAL A 86 O TRP A 119 SHEET 4 A 5 PHE A 33 ASP A 37 1 N VAL A 36 O ILE A 87 SHEET 5 A 5 TRP A 52 HIS A 53 1 O TRP A 52 N ASP A 37 SHEET 1 B 2 HIS A 47 ILE A 48 0 SHEET 2 B 2 THR A 139 ALA A 140 -1 O ALA A 140 N HIS A 47 SHEET 1 C 5 VAL B 9 LEU B 12 0 SHEET 2 C 5 CYS B 116 LEU B 121 1 O VAL B 120 N LEU B 12 SHEET 3 C 5 LEU B 84 HIS B 89 1 N PHE B 88 O TRP B 119 SHEET 4 C 5 PHE B 33 ASP B 37 1 N VAL B 36 O ILE B 87 SHEET 5 C 5 TRP B 52 HIS B 53 1 O TRP B 52 N ASP B 37 SHEET 1 D 2 HIS B 47 ILE B 48 0 SHEET 2 D 2 THR B 139 ALA B 140 -1 O ALA B 140 N HIS B 47 LINK C TRP A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N GLN A 22 1555 1555 1.33 LINK C TYR A 43 N AMSE A 44 1555 1555 1.33 LINK C TYR A 43 N BMSE A 44 1555 1555 1.33 LINK C AMSE A 44 N GLY A 45 1555 1555 1.33 LINK C BMSE A 44 N GLY A 45 1555 1555 1.33 LINK C CYS A 90 N MSE A 91 1555 1555 1.34 LINK C MSE A 91 N LEU A 92 1555 1555 1.33 LINK C ALA A 101 N MSE A 102 1555 1555 1.34 LINK C MSE A 102 N LEU A 103 1555 1555 1.33 LINK C TRP B 20 N MSE B 21 1555 1555 1.33 LINK C MSE B 21 N GLN B 22 1555 1555 1.33 LINK C TYR B 43 N AMSE B 44 1555 1555 1.34 LINK C TYR B 43 N BMSE B 44 1555 1555 1.34 LINK C AMSE B 44 N GLY B 45 1555 1555 1.34 LINK C BMSE B 44 N GLY B 45 1555 1555 1.33 LINK C CYS B 90 N MSE B 91 1555 1555 1.33 LINK C MSE B 91 N LEU B 92 1555 1555 1.32 LINK C ALA B 101 N MSE B 102 1555 1555 1.34 LINK C MSE B 102 N LEU B 103 1555 1555 1.33 SITE 1 AC1 9 ARG A 81 CYS A 90 MSE A 91 LEU A 92 SITE 2 AC1 9 SER A 93 GLN A 94 GLN A 95 ARG A 96 SITE 3 AC1 9 HOH A 202 SITE 1 AC2 5 GLY A 40 SER A 41 ARG A 96 HOH A 159 SITE 2 AC2 5 HOH A 310 SITE 1 AC3 2 ARG A 117 ARG B 117 SITE 1 AC4 7 ARG A 19 TRP A 20 THR A 26 THR A 27 SITE 2 AC4 7 THR A 28 HOH A 282 HOH A 300 SITE 1 AC5 1 ARG A 72 SITE 1 AC6 8 TRP B 52 HIS B 53 TYR B 54 ARG B 72 SITE 2 AC6 8 HOH B 223 HOH B 227 HOH B 309 HOH B 311 SITE 1 AC7 6 GLY B 40 SER B 41 ARG B 96 HOH B 256 SITE 2 AC7 6 HOH B 278 HOH B 322 SITE 1 AC8 9 ARG B 81 CYS B 90 MSE B 91 LEU B 92 SITE 2 AC8 9 SER B 93 GLN B 94 GLN B 95 ARG B 96 SITE 3 AC8 9 HOH B 255 SITE 1 AC9 6 HIS B 47 ILE B 48 LYS B 49 ASP B 50 SITE 2 AC9 6 ALA B 140 HOH B 214 SITE 1 BC1 3 ASP A 145 MSE B 102 ARG B 106 CRYST1 74.382 72.025 53.514 90.00 103.60 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013444 0.000000 0.003252 0.00000 SCALE2 0.000000 0.013884 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019226 0.00000