HEADER HYDROLASE 31-OCT-08 3F4C TITLE CRYSTAL STRUCTURE OF ORGANOPHOSPHORUS HYDROLASE FROM GEOBACILLUS TITLE 2 STEAROTHERMOPHILUS STRAIN 10, WITH GLYCEROL BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORGANOPHOSPHORUS HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 272567; SOURCE 4 STRAIN: 10; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA BARREL, AMIDOHYDROLASE, BINUCLEAR METAL ENZYME, GLYCEROL- KEYWDS 2 BOUND, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.HAWWA,J.AIKENS,R.J.TURNER,B.SANTARSIERO,A.MESECAR REVDAT 4 15-NOV-23 3F4C 1 REMARK REVDAT 3 06-SEP-23 3F4C 1 REMARK DBREF SEQADV LINK REVDAT 2 13-JUL-11 3F4C 1 VERSN REVDAT 1 15-SEP-09 3F4C 0 JRNL AUTH R.HAWWA,J.AIKENS,R.J.TURNER,B.D.SANTARSIERO,A.D.MESECAR JRNL TITL STRUCTURAL BASIS FOR THERMOSTABILITY REVEALED THROUGH THE JRNL TITL 2 IDENTIFICATION AND CHARACTERIZATION OF A HIGHLY THERMOSTABLE JRNL TITL 3 PHOSPHOTRIESTERASE-LIKE LACTONASE FROM GEOBACILLUS JRNL TITL 4 STEAROTHERMOPHILUS. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 488 109 2009 JRNL REFN ISSN 0003-9861 JRNL PMID 19615330 JRNL DOI 10.1016/J.ABB.2009.06.005 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 35079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1742 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2843 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 18 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5096 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.09700 REMARK 3 B22 (A**2) : -12.05600 REMARK 3 B33 (A**2) : 3.95900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.76900 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.623 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.010 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 72.53 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3F4C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35079 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE, 30% W/V PEG 4000. CRYOPROTECTANT: 0.35 M AMMONIUM REMARK 280 ACETATE, 0.25 M SODIUM CITRATE PH 5.0, 30% PEG 4000, 30% REMARK 280 GLYCEROL, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 78.38050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 99 REMARK 465 ALA A 100 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 MET B 99 REMARK 465 ALA B 100 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 465 HIS B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 320 OD2 ASP B 234 1656 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 125 CA - CB - CG ANGL. DEV. = 20.0 DEGREES REMARK 500 PHE B 326 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 121 92.34 -160.26 REMARK 500 GLU A 142 -79.09 -48.13 REMARK 500 ASP A 143 -39.53 -39.82 REMARK 500 ALA A 233 -129.43 50.72 REMARK 500 VAL A 335 35.75 79.00 REMARK 500 PRO A 377 177.04 -52.92 REMARK 500 VAL A 389 -4.45 -59.76 REMARK 500 ILE A 415 -58.39 -124.86 REMARK 500 PRO B 167 32.33 -90.58 REMARK 500 ALA B 216 -70.97 -47.30 REMARK 500 ALA B 233 -133.16 55.08 REMARK 500 LYS B 248 -48.72 -29.46 REMARK 500 VAL B 335 73.35 74.09 REMARK 500 ILE B 415 -53.43 -122.20 REMARK 500 SER B 423 -138.92 -136.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 501 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 20 O REMARK 620 2 HIS A 121 NE2 101.9 REMARK 620 3 HIS A 123 NE2 156.8 99.7 REMARK 620 4 ASP A 364 OD1 89.0 84.8 84.5 REMARK 620 5 GOL A 601 O3 77.1 170.3 80.2 85.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 502 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 20 O REMARK 620 2 KCX A 243 OQ1 99.5 REMARK 620 3 HIS A 276 ND1 173.5 77.6 REMARK 620 4 HIS A 304 NE2 91.6 110.5 84.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 501 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 25 O REMARK 620 2 HIS B 121 NE2 110.0 REMARK 620 3 HIS B 123 NE2 153.0 96.2 REMARK 620 4 KCX B 243 OQ1 85.1 103.8 95.2 REMARK 620 5 ASP B 364 OD1 97.2 76.4 82.3 177.5 REMARK 620 6 GOL B 601 O1 61.3 168.1 91.8 84.1 96.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 502 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 25 O REMARK 620 2 KCX B 243 OQ2 79.9 REMARK 620 3 HIS B 276 ND1 148.9 130.7 REMARK 620 4 HIS B 304 NE2 85.0 110.4 79.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F4D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ORGANOPHOSPHORUS HYDROLASE FROM GEOBACILLUS REMARK 900 STEAROTHERMOPHILUS STRAIN 10 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE REMARK 999 UNIPROT KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME REMARK 999 OF DEPOSITION. DBREF 3F4C A 99 424 PDB 3F4C 3F4C 99 424 DBREF 3F4C B 99 424 PDB 3F4C 3F4C 99 424 SEQADV 3F4C HIS A 425 PDB 3F4C EXPRESSION TAG SEQADV 3F4C HIS A 426 PDB 3F4C EXPRESSION TAG SEQADV 3F4C HIS A 427 PDB 3F4C EXPRESSION TAG SEQADV 3F4C HIS A 428 PDB 3F4C EXPRESSION TAG SEQADV 3F4C HIS A 429 PDB 3F4C EXPRESSION TAG SEQADV 3F4C HIS A 430 PDB 3F4C EXPRESSION TAG SEQADV 3F4C HIS B 425 PDB 3F4C EXPRESSION TAG SEQADV 3F4C HIS B 426 PDB 3F4C EXPRESSION TAG SEQADV 3F4C HIS B 427 PDB 3F4C EXPRESSION TAG SEQADV 3F4C HIS B 428 PDB 3F4C EXPRESSION TAG SEQADV 3F4C HIS B 429 PDB 3F4C EXPRESSION TAG SEQADV 3F4C HIS B 430 PDB 3F4C EXPRESSION TAG SEQRES 1 A 332 MET ALA LYS THR VAL GLU THR VAL LEU GLY PRO VAL PRO SEQRES 2 A 332 VAL GLU GLN LEU GLY LYS THR LEU ILE HIS GLU HIS PHE SEQRES 3 A 332 LEU PHE GLY TYR PRO GLY PHE GLN GLY ASP VAL THR ARG SEQRES 4 A 332 GLY THR PHE ARG GLU ASP GLU ALA LEU ARG VAL ALA VAL SEQRES 5 A 332 GLU ALA ALA GLU LYS MET LYS ARG HIS GLY ILE GLN THR SEQRES 6 A 332 VAL VAL ASP PRO THR PRO ASN ASP CYS GLY ARG ASN PRO SEQRES 7 A 332 ALA PHE LEU ARG ARG VAL ALA GLU GLU THR GLY LEU ASN SEQRES 8 A 332 ILE ILE CYS ALA THR GLY TYR TYR TYR GLU GLY GLU GLY SEQRES 9 A 332 ALA PRO PRO TYR PHE GLN PHE ARG ARG LEU LEU GLY THR SEQRES 10 A 332 ALA GLU ASP ASP ILE TYR ASP MET PHE MET ALA GLU LEU SEQRES 11 A 332 THR GLU GLY ILE ALA ASP THR GLY ILE LYS ALA GLY VAL SEQRES 12 A 332 ILE KCX LEU ALA SER SER LYS GLY ARG ILE THR GLU TYR SEQRES 13 A 332 GLU LYS MET PHE PHE ARG ALA ALA ALA ARG ALA GLN LYS SEQRES 14 A 332 GLU THR GLY ALA VAL ILE ILE THR HIS THR GLN GLU GLY SEQRES 15 A 332 THR MET GLY PRO GLU GLN ALA ALA TYR LEU LEU GLU HIS SEQRES 16 A 332 GLY ALA ASP PRO LYS LYS ILE VAL ILE GLY HIS MET CYS SEQRES 17 A 332 GLY ASN THR ASP PRO ASP TYR HIS ARG LYS THR LEU ALA SEQRES 18 A 332 TYR GLY VAL TYR ILE ALA PHE ASP ARG PHE GLY ILE GLN SEQRES 19 A 332 GLY MET VAL GLY ALA PRO THR ASP GLU GLU ARG VAL ARG SEQRES 20 A 332 THR LEU LEU ALA LEU LEU ARG ASP GLY TYR GLU LYS GLN SEQRES 21 A 332 ILE MET LEU SER HIS ASP THR VAL ASN VAL TRP LEU GLY SEQRES 22 A 332 ARG PRO PHE THR LEU PRO GLU PRO PHE ALA GLU MET MET SEQRES 23 A 332 LYS ASN TRP HIS VAL GLU HIS LEU PHE VAL ASN ILE ILE SEQRES 24 A 332 PRO ALA LEU LYS ASN GLU GLY ILE ARG ASP GLU VAL LEU SEQRES 25 A 332 GLU GLN MET PHE ILE GLY ASN PRO ALA ALA LEU PHE SER SEQRES 26 A 332 ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 332 MET ALA LYS THR VAL GLU THR VAL LEU GLY PRO VAL PRO SEQRES 2 B 332 VAL GLU GLN LEU GLY LYS THR LEU ILE HIS GLU HIS PHE SEQRES 3 B 332 LEU PHE GLY TYR PRO GLY PHE GLN GLY ASP VAL THR ARG SEQRES 4 B 332 GLY THR PHE ARG GLU ASP GLU ALA LEU ARG VAL ALA VAL SEQRES 5 B 332 GLU ALA ALA GLU LYS MET LYS ARG HIS GLY ILE GLN THR SEQRES 6 B 332 VAL VAL ASP PRO THR PRO ASN ASP CYS GLY ARG ASN PRO SEQRES 7 B 332 ALA PHE LEU ARG ARG VAL ALA GLU GLU THR GLY LEU ASN SEQRES 8 B 332 ILE ILE CYS ALA THR GLY TYR TYR TYR GLU GLY GLU GLY SEQRES 9 B 332 ALA PRO PRO TYR PHE GLN PHE ARG ARG LEU LEU GLY THR SEQRES 10 B 332 ALA GLU ASP ASP ILE TYR ASP MET PHE MET ALA GLU LEU SEQRES 11 B 332 THR GLU GLY ILE ALA ASP THR GLY ILE LYS ALA GLY VAL SEQRES 12 B 332 ILE KCX LEU ALA SER SER LYS GLY ARG ILE THR GLU TYR SEQRES 13 B 332 GLU LYS MET PHE PHE ARG ALA ALA ALA ARG ALA GLN LYS SEQRES 14 B 332 GLU THR GLY ALA VAL ILE ILE THR HIS THR GLN GLU GLY SEQRES 15 B 332 THR MET GLY PRO GLU GLN ALA ALA TYR LEU LEU GLU HIS SEQRES 16 B 332 GLY ALA ASP PRO LYS LYS ILE VAL ILE GLY HIS MET CYS SEQRES 17 B 332 GLY ASN THR ASP PRO ASP TYR HIS ARG LYS THR LEU ALA SEQRES 18 B 332 TYR GLY VAL TYR ILE ALA PHE ASP ARG PHE GLY ILE GLN SEQRES 19 B 332 GLY MET VAL GLY ALA PRO THR ASP GLU GLU ARG VAL ARG SEQRES 20 B 332 THR LEU LEU ALA LEU LEU ARG ASP GLY TYR GLU LYS GLN SEQRES 21 B 332 ILE MET LEU SER HIS ASP THR VAL ASN VAL TRP LEU GLY SEQRES 22 B 332 ARG PRO PHE THR LEU PRO GLU PRO PHE ALA GLU MET MET SEQRES 23 B 332 LYS ASN TRP HIS VAL GLU HIS LEU PHE VAL ASN ILE ILE SEQRES 24 B 332 PRO ALA LEU LYS ASN GLU GLY ILE ARG ASP GLU VAL LEU SEQRES 25 B 332 GLU GLN MET PHE ILE GLY ASN PRO ALA ALA LEU PHE SER SEQRES 26 B 332 ALA HIS HIS HIS HIS HIS HIS MODRES 3F4C KCX A 243 LYS LYSINE NZ-CARBOXYLIC ACID MODRES 3F4C KCX B 243 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 243 12 HET KCX B 243 12 HET CO A 502 1 HET GOL A 601 6 HET CO A 501 1 HET GOL B 601 6 HET CO B 501 1 HET CO B 502 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CO COBALT (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 CO 4(CO 2+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 9 HOH *440(H2 O) HELIX 1 1 GLU A 113 LEU A 115 5 3 HELIX 2 2 GLY A 130 VAL A 135 5 6 HELIX 3 3 ARG A 141 ARG A 158 1 18 HELIX 4 4 PRO A 169 GLY A 173 5 5 HELIX 5 5 ASN A 175 GLY A 187 1 13 HELIX 6 6 PRO A 204 LEU A 213 1 10 HELIX 7 7 THR A 215 GLU A 230 1 16 HELIX 8 8 THR A 252 GLY A 270 1 19 HELIX 9 9 MET A 282 HIS A 293 1 12 HELIX 10 10 ASP A 296 LYS A 298 5 3 HELIX 11 11 HIS A 304 ASN A 308 5 5 HELIX 12 12 ASP A 310 ALA A 319 1 10 HELIX 13 13 THR A 339 ASP A 353 1 15 HELIX 14 14 TYR A 355 LYS A 357 5 3 HELIX 15 15 PRO A 377 MET A 384 1 8 HELIX 16 16 GLU A 390 ASN A 395 1 6 HELIX 17 17 ASN A 395 ASN A 402 1 8 HELIX 18 18 ARG A 406 ILE A 415 1 10 HELIX 19 19 ILE A 415 SER A 423 1 9 HELIX 20 20 GLU B 113 LEU B 115 5 3 HELIX 21 21 GLY B 130 VAL B 135 5 6 HELIX 22 22 ARG B 141 ARG B 158 1 18 HELIX 23 23 ASN B 175 GLY B 187 1 13 HELIX 24 24 TYR B 198 GLY B 202 5 5 HELIX 25 25 PRO B 204 LEU B 213 1 10 HELIX 26 26 THR B 215 GLU B 230 1 16 HELIX 27 27 THR B 252 GLY B 270 1 19 HELIX 28 28 MET B 282 HIS B 293 1 12 HELIX 29 29 ASP B 296 LYS B 298 5 3 HELIX 30 30 HIS B 304 ASN B 308 5 5 HELIX 31 31 ASP B 310 ALA B 319 1 10 HELIX 32 32 THR B 339 ASP B 353 1 15 HELIX 33 33 TYR B 355 LYS B 357 5 3 HELIX 34 34 PRO B 377 MET B 384 1 8 HELIX 35 35 GLU B 390 ASN B 395 1 6 HELIX 36 36 ASN B 395 ASN B 402 1 8 HELIX 37 37 ARG B 406 ILE B 415 1 10 HELIX 38 38 ILE B 415 PHE B 422 1 8 SHEET 1 A 2 THR A 102 THR A 105 0 SHEET 2 A 2 GLY A 108 PRO A 111 -1 O VAL A 110 N VAL A 103 SHEET 1 B 8 THR A 118 LEU A 119 0 SHEET 2 B 8 THR A 163 ASP A 166 1 O THR A 163 N LEU A 119 SHEET 3 B 8 ASN A 189 THR A 194 1 O ILE A 191 N ASP A 166 SHEET 4 B 8 VAL A 241 ALA A 245 1 O KCX A 243 N THR A 194 SHEET 5 B 8 VAL A 272 HIS A 276 1 O VAL A 272 N ILE A 242 SHEET 6 B 8 ILE A 300 ILE A 302 1 O VAL A 301 N THR A 275 SHEET 7 B 8 TYR A 323 PHE A 326 1 O TYR A 323 N ILE A 302 SHEET 8 B 8 ILE A 359 LEU A 361 1 O MET A 360 N PHE A 326 SHEET 1 C 2 HIS A 123 PHE A 126 0 SHEET 2 C 2 VAL A 366 TRP A 369 1 O VAL A 368 N PHE A 126 SHEET 1 D 2 THR B 102 THR B 105 0 SHEET 2 D 2 GLY B 108 PRO B 111 -1 O VAL B 110 N VAL B 103 SHEET 1 E 8 THR B 118 LEU B 119 0 SHEET 2 E 8 THR B 163 ASP B 166 1 O VAL B 165 N LEU B 119 SHEET 3 E 8 ASN B 189 THR B 194 1 O ILE B 191 N ASP B 166 SHEET 4 E 8 VAL B 241 ALA B 245 1 O KCX B 243 N THR B 194 SHEET 5 E 8 VAL B 272 HIS B 276 1 O ILE B 274 N ILE B 242 SHEET 6 E 8 ILE B 300 ILE B 302 1 O VAL B 301 N THR B 275 SHEET 7 E 8 TYR B 323 PHE B 326 1 O TYR B 323 N ILE B 300 SHEET 8 E 8 ILE B 359 LEU B 361 1 O MET B 360 N PHE B 326 SHEET 1 F 2 HIS B 123 PHE B 126 0 SHEET 2 F 2 VAL B 366 TRP B 369 1 O ASN B 367 N HIS B 123 LINK C ILE A 242 N KCX A 243 1555 1555 1.32 LINK C KCX A 243 N LEU A 244 1555 1555 1.34 LINK C ILE B 242 N KCX B 243 1555 1555 1.32 LINK C KCX B 243 N LEU B 244 1555 1555 1.33 LINK O HOH A 20 CO CO A 501 1555 1555 2.06 LINK O HOH A 20 CO CO A 502 1555 1555 1.92 LINK NE2 HIS A 121 CO CO A 501 1555 1555 2.19 LINK NE2 HIS A 123 CO CO A 501 1555 1555 2.09 LINK OQ1 KCX A 243 CO CO A 502 1555 1555 2.15 LINK ND1 HIS A 276 CO CO A 502 1555 1555 2.47 LINK NE2 HIS A 304 CO CO A 502 1555 1555 2.46 LINK OD1 ASP A 364 CO CO A 501 1555 1555 2.42 LINK CO CO A 501 O3 GOL A 601 1555 1555 2.43 LINK O HOH B 25 CO CO B 501 1555 1555 2.34 LINK O HOH B 25 CO CO B 502 1555 1555 1.89 LINK NE2 HIS B 121 CO CO B 501 1555 1555 2.10 LINK NE2 HIS B 123 CO CO B 501 1555 1555 2.16 LINK OQ1 KCX B 243 CO CO B 501 1555 1555 2.46 LINK OQ2 KCX B 243 CO CO B 502 1555 1555 2.44 LINK ND1 HIS B 276 CO CO B 502 1555 1555 2.39 LINK NE2 HIS B 304 CO CO B 502 1555 1555 2.50 LINK OD1 ASP B 364 CO CO B 501 1555 1555 2.25 LINK CO CO B 501 O1 GOL B 601 1555 1555 2.41 SITE 1 AC1 11 HOH B 25 HIS B 123 PHE B 126 TYR B 128 SITE 2 AC1 11 TYR B 197 KCX B 243 ARG B 328 ASP B 364 SITE 3 AC1 11 CO B 501 HOH B 584 HOH B 629 SITE 1 AC2 7 HOH A 20 TYR A 197 KCX A 243 HIS A 276 SITE 2 AC2 7 HIS A 304 CO A 501 GOL A 601 SITE 1 AC3 9 HOH A 20 HIS A 123 TYR A 128 TYR A 197 SITE 2 AC3 9 ARG A 328 ASP A 364 CO A 501 CO A 502 SITE 3 AC3 9 HOH A 568 SITE 1 AC4 7 HOH A 20 HIS A 121 HIS A 123 KCX A 243 SITE 2 AC4 7 ASP A 364 CO A 502 GOL A 601 SITE 1 AC5 6 HOH B 25 HIS B 121 HIS B 123 KCX B 243 SITE 2 AC5 6 ASP B 364 GOL B 601 SITE 1 AC6 5 HOH B 25 TYR B 197 KCX B 243 HIS B 276 SITE 2 AC6 5 HIS B 304 CRYST1 47.212 156.761 49.990 90.00 116.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021181 0.000000 0.010556 0.00000 SCALE2 0.000000 0.006379 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022351 0.00000