data_3F4E # _entry.id 3F4E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3F4E pdb_00003f4e 10.2210/pdb3f4e/pdb NDB UR0177 ? ? RCSB RCSB050132 ? ? WWPDB D_1000050132 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3F2Q 'FMN bound, native data set' unspecified PDB 3F2T 'FMN bound, iridium soak' unspecified PDB 3F2W 'FMN bound, barium soak' unspecified PDB 3F2X 'FMN bound, cesium soak' unspecified PDB 3F2Y 'FMN bound, manganese soak' unspecified PDB 3F30 'FMN bound, cobalt soak' unspecified PDB 3F4G 'Riboflavin bound, native data set, split RNA' unspecified PDB 3F4H 'Roseoflavin bound' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3F4E _pdbx_database_status.recvd_initial_deposition_date 2008-10-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Serganov, A.A.' 1 'Huang, L.' 2 # _citation.id primary _citation.title 'Coenzyme recognition and gene regulation by a flavin mononucleotide riboswitch.' _citation.journal_abbrev Nature _citation.journal_volume 458 _citation.page_first 233 _citation.page_last 237 _citation.year 2009 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19169240 _citation.pdbx_database_id_DOI 10.1038/nature07642 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Serganov, A.' 1 ? primary 'Huang, L.' 2 ? primary 'Patel, D.J.' 3 ? # _cell.entry_id 3F4E _cell.length_a 71.471 _cell.length_b 71.471 _cell.length_c 140.554 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F4E _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'FMN riboswitch' 17455.389 1 ? 'U52C, A53U' ? ;FMN riboswitch, 5' strand ; 2 polymer syn 'FMN riboswitch' 18092.771 1 ? ? ? ;FMN riboswitch, 3' strand ; 3 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 13 ? ? ? ? 5 non-polymer syn 'FLAVIN MONONUCLEOTIDE' 456.344 1 ? ? ? ? 6 water nat water 18.015 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGCUU X ? 2 polyribonucleotide no no GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUC Y ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 A n 1 51 G n 1 52 C n 1 53 U n 1 54 U n 2 1 G n 2 2 C n 2 3 U n 2 4 U n 2 5 U n 2 6 G n 2 7 A n 2 8 U n 2 9 U n 2 10 U n 2 11 G n 2 12 G n 2 13 U n 2 14 G n 2 15 A n 2 16 A n 2 17 A n 2 18 U n 2 19 U n 2 20 C n 2 21 C n 2 22 A n 2 23 A n 2 24 A n 2 25 A n 2 26 C n 2 27 C n 2 28 G n 2 29 A n 2 30 C n 2 31 A n 2 32 G n 2 33 U n 2 34 A n 2 35 G n 2 36 A n 2 37 G n 2 38 U n 2 39 C n 2 40 U n 2 41 G n 2 42 G n 2 43 A n 2 44 U n 2 45 G n 2 46 A n 2 47 G n 2 48 A n 2 49 G n 2 50 A n 2 51 A n 2 52 G n 2 53 A n 2 54 U n 2 55 U n 2 56 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'In vitro transcribed RNA from Fusobacterium nucleatum impX gene.' 2 1 sample ? ? ? ? ? 'In vitro transcribed RNA from Fusobacterium nucleatum impX gene.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 GB AE009951 20095250 1 2495 AUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAU ? 2 GB AE009951 20095250 2 2549 GCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGA ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3F4E X 3 ? 54 ? 20095250 2495 ? 2546 ? 3 54 2 2 3F4E Y 1 ? 53 ? 20095250 2549 ? 2601 ? 57 109 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3F4E G X 1 ? GB 20095250 ? ? insertion 1 1 1 3F4E G X 2 ? GB 20095250 ? ? insertion 2 2 1 3F4E C X 52 ? GB 20095250 U 2544 'engineered mutation' 52 3 1 3F4E U X 53 ? GB 20095250 A 2545 'engineered mutation' 53 4 2 3F4E U Y 54 ? GB 20095250 ? ? insertion 110 5 2 3F4E U Y 55 ? GB 20095250 ? ? insertion 111 6 2 3F4E C Y 56 ? GB 20095250 ? ? insertion 112 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 FMN non-polymer . 'FLAVIN MONONUCLEOTIDE' 'RIBOFLAVIN MONOPHOSPHATE' 'C17 H21 N4 O9 P' 456.344 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3F4E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.92 _exptl_crystal.density_percent_sol 57.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;0.1 MES-Na pH 6.5 10% PEG 4000 0.1 M MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MES-Na ? ? ? 1 2 1 PEG4000 ? ? ? 1 3 1 MgCl2 ? ? ? 1 4 2 MES-Na ? ? ? 1 5 2 PEG4000 ? ? ? 1 6 2 MgCl2 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-07-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.08 # _reflns.entry_id 3F4E _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 3.05 _reflns.number_obs 8297 _reflns.number_all 8337 _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 60.7 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 16.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.05 _reflns_shell.d_res_low 3.16 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs 0.511 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 8.2 _reflns_shell.pdbx_redundancy 15.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 813 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3F4E _refine.ls_number_reflns_obs 7869 _refine.ls_number_reflns_all 7953 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 3.05 _refine.ls_percent_reflns_obs 98.94 _refine.ls_R_factor_obs 0.20105 _refine.ls_R_factor_all 0.20105 _refine.ls_R_factor_R_work 0.19955 _refine.ls_R_factor_R_free 0.23176 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 382 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 63.051 _refine.aniso_B[1][1] 2.69 _refine.aniso_B[2][2] 2.69 _refine.aniso_B[3][3] -4.03 _refine.aniso_B[1][2] 1.34 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3F2Q _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.397 _refine.overall_SU_ML 0.371 _refine.overall_SU_B 41.907 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3F4E _refine_analyze.Luzzati_coordinate_error_obs 0.371 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2340 _refine_hist.pdbx_number_atoms_ligand 45 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 2387 _refine_hist.d_res_high 3.05 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.021 ? 2653 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.028 3.000 ? 4132 'X-RAY DIFFRACTION' ? r_chiral_restr 0.053 0.200 ? 548 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1158 'X-RAY DIFFRACTION' ? r_nbd_refined 0.172 0.200 ? 1099 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.281 0.200 ? 1638 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.173 0.200 ? 78 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.074 0.200 ? 2 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.166 0.200 ? 24 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.142 0.200 ? 2 'X-RAY DIFFRACTION' ? r_scbond_it 0.886 3.000 ? 2831 'X-RAY DIFFRACTION' ? r_scangle_it 1.472 4.500 ? 4132 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.050 _refine_ls_shell.d_res_low 3.128 _refine_ls_shell.number_reflns_R_work 557 _refine_ls_shell.R_factor_R_work 0.309 _refine_ls_shell.percent_reflns_obs 97.18 _refine_ls_shell.R_factor_R_free 0.340 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 585 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3F4E _struct.title 'Crystal structure of the FMN riboswitch bound to FMN, split RNA.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3F4E _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'FMN, riboswitch, transcription, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 5 ? O N N 4 ? P N N 4 ? Q N N 4 ? R N N 6 ? S N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A A 14 OP2 ? ? ? 1_555 F MG . MG ? ? X A 14 X MG 306 1_555 ? ? ? ? ? ? ? 1.931 ? ? metalc2 metalc ? ? A U 23 OP2 ? ? ? 1_555 L MG . MG ? ? X U 23 X MG 314 1_555 ? ? ? ? ? ? ? 1.904 ? ? metalc3 metalc ? ? A G 28 O6 ? ? ? 1_555 H MG . MG ? ? X G 28 X MG 310 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc4 metalc ? ? A G 33 N7 ? ? ? 1_555 E MG . MG ? ? X G 33 X MG 304 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc5 metalc ? ? B U 33 O4 ? ? ? 1_555 P MG . MG ? ? Y U 89 Y MG 305 1_555 ? ? ? ? ? ? ? 2.031 ? ? metalc6 metalc ? ? B A 36 OP2 ? ? ? 1_555 P MG . MG ? ? Y A 92 Y MG 305 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc7 metalc ? ? B G 37 N7 ? ? ? 1_555 O MG . MG ? ? Y G 93 Y MG 303 1_555 ? ? ? ? ? ? ? 2.487 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 56 N3 ? ? X G 1 Y C 112 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 55 O2 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 B U 55 N3 ? ? X G 2 Y U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 54 N3 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 54 O4 ? ? X A 3 Y U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 52 N1 ? ? X C 5 Y G 108 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog7 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 51 N1 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 51 N6 ? ? X U 6 Y A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 50 N1 ? ? X U 7 Y A 106 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog10 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 49 N1 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 49 O6 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 49 N2 ? ? X C 8 Y G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 9 N2 ? ? ? 1_555 B A 48 N7 ? ? X G 9 Y A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog14 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog15 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 11 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog16 hydrog ? ? A G 12 N3 ? ? ? 1_555 B G 37 N2 ? ? X G 12 Y G 93 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog17 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog18 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog19 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog20 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog21 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog28 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog29 hydrog ? ? A G 19 N2 ? ? ? 1_555 B A 34 N7 ? ? X G 19 Y A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog30 hydrog ? ? A G 19 N3 ? ? ? 1_555 B A 34 N6 ? ? X G 19 Y A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog31 hydrog ? ? A A 29 N1 ? ? ? 1_555 B U 38 N3 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A A 29 N6 ? ? ? 1_555 B U 38 O4 ? ? X A 29 Y U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 30 N3 ? ? ? 1_555 B G 37 N1 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 30 N4 ? ? ? 1_555 B G 37 O6 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 30 O2 ? ? ? 1_555 B G 37 N2 ? ? X C 30 Y G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 31 N3 ? ? ? 1_555 B G 28 N1 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 31 N4 ? ? ? 1_555 B G 28 O6 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 31 O2 ? ? ? 1_555 B G 28 N2 ? ? X C 31 Y G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 32 N1 ? ? ? 1_555 B C 27 N3 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 32 N2 ? ? ? 1_555 B C 27 O2 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 32 O6 ? ? ? 1_555 B C 27 N4 ? ? X G 32 Y C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 33 N2 ? ? ? 1_555 B A 48 N3 ? ? X G 33 Y A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog46 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog55 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog56 hydrog ? ? A A 38 N7 ? ? ? 1_555 B G 14 N2 ? ? X A 38 Y G 70 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog57 hydrog ? ? A G 41 N2 ? ? ? 1_555 B A 7 N3 ? ? X G 41 Y A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog58 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 26 N3 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 26 O2 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 26 N4 ? ? X G 41 Y C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 42 N3 ? ? ? 1_555 B A 25 N1 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 42 O4 ? ? ? 1_555 B A 25 N6 ? ? X U 42 Y A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 49 N6 ? ? ? 1_555 B U 4 O2 ? ? X A 49 Y U 60 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog64 hydrog ? ? A A 50 N1 ? ? ? 1_555 B U 3 N3 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 50 N6 ? ? ? 1_555 B U 3 O4 ? ? X A 50 Y U 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 51 N1 ? ? ? 1_555 B C 2 N3 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 51 N2 ? ? ? 1_555 B C 2 O2 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 51 O6 ? ? ? 1_555 B C 2 N4 ? ? X G 51 Y C 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 52 O2 ? ? ? 1_555 B G 1 N1 ? ? X C 52 Y G 57 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog70 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 27 O2 ? ? Y G 62 Y C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog71 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 24 N1 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 24 N6 ? ? Y U 64 Y A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 23 N1 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 23 N6 ? ? Y U 65 Y A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 22 N1 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 22 N6 ? ? Y U 66 Y A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 21 N3 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 21 O2 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 21 N4 ? ? Y G 67 Y C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 20 N3 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 20 O2 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 20 N4 ? ? Y G 68 Y C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 17 N7 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog84 hydrog ? ? B U 13 O2 ? ? ? 1_555 B A 17 N6 ? ? Y U 69 Y A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog85 hydrog ? ? B A 29 N1 ? ? ? 1_555 B G 42 N1 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog86 hydrog ? ? B A 29 N6 ? ? ? 1_555 B G 42 O6 ? ? Y A 85 Y G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog87 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 41 N1 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 41 O6 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 41 N2 ? ? Y C 86 Y G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B A 31 N1 ? ? ? 1_555 B U 40 N3 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B A 31 N6 ? ? ? 1_555 B U 40 O4 ? ? Y A 87 Y U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 32 N1 ? ? ? 1_555 B A 36 N7 ? ? Y G 88 Y A 92 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog93 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 39 N3 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 39 O2 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 39 N4 ? ? Y G 88 Y C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B U 33 N3 ? ? ? 1_555 B A 36 N7 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog97 hydrog ? ? B U 33 O2 ? ? ? 1_555 B A 36 N6 ? ? Y U 89 Y A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software X MG 302 ? 1 'BINDING SITE FOR RESIDUE MG X 302' AC2 Software X MG 304 ? 2 'BINDING SITE FOR RESIDUE MG X 304' AC3 Software X MG 306 ? 1 'BINDING SITE FOR RESIDUE MG X 306' AC4 Software X MG 307 ? 1 'BINDING SITE FOR RESIDUE MG X 307' AC5 Software X MG 310 ? 1 'BINDING SITE FOR RESIDUE MG X 310' AC6 Software X MG 314 ? 2 'BINDING SITE FOR RESIDUE MG X 314' AC7 Software X MG 318 ? 2 'BINDING SITE FOR RESIDUE MG X 318' AC8 Software Y FMN 200 ? 12 'BINDING SITE FOR RESIDUE FMN Y 200' AC9 Software Y MG 303 ? 1 'BINDING SITE FOR RESIDUE MG Y 303' BC1 Software Y MG 305 ? 2 'BINDING SITE FOR RESIDUE MG Y 305' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 G A 19 ? G X 19 . ? 1_555 ? 2 AC2 2 G A 33 ? G X 33 . ? 1_555 ? 3 AC2 2 FMN N . ? FMN Y 200 . ? 1_555 ? 4 AC3 1 A A 14 ? A X 14 . ? 1_555 ? 5 AC4 1 A A 38 ? A X 38 . ? 4_555 ? 6 AC5 1 G A 28 ? G X 28 . ? 1_555 ? 7 AC6 2 A A 22 ? A X 22 . ? 1_555 ? 8 AC6 2 U A 23 ? U X 23 . ? 1_555 ? 9 AC7 2 G A 12 ? G X 12 . ? 1_555 ? 10 AC7 2 C B 39 ? C Y 95 . ? 1_555 ? 11 AC8 12 G A 10 ? G X 10 . ? 1_555 ? 12 AC8 12 G A 11 ? G X 11 . ? 1_555 ? 13 AC8 12 G A 32 ? G X 32 . ? 1_555 ? 14 AC8 12 G A 33 ? G X 33 . ? 1_555 ? 15 AC8 12 A A 48 ? A X 48 . ? 1_555 ? 16 AC8 12 A A 49 ? A X 49 . ? 1_555 ? 17 AC8 12 MG E . ? MG X 304 . ? 1_555 ? 18 AC8 12 G B 6 ? G Y 62 . ? 1_555 ? 19 AC8 12 G B 28 ? G Y 84 . ? 1_555 ? 20 AC8 12 A B 29 ? A Y 85 . ? 1_555 ? 21 AC8 12 G B 42 ? G Y 98 . ? 1_555 ? 22 AC8 12 A B 43 ? A Y 99 . ? 1_555 ? 23 AC9 1 G B 37 ? G Y 93 . ? 1_555 ? 24 BC1 2 U B 33 ? U Y 89 . ? 1_555 ? 25 BC1 2 A B 36 ? A Y 92 . ? 1_555 ? # _database_PDB_matrix.entry_id 3F4E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3F4E _atom_sites.fract_transf_matrix[1][1] 0.013992 _atom_sites.fract_transf_matrix[1][2] 0.008078 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016156 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007115 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 U 4 4 4 U U X . n A 1 5 C 5 5 5 C C X . n A 1 6 U 6 6 6 U U X . n A 1 7 U 7 7 7 U U X . n A 1 8 C 8 8 8 C C X . n A 1 9 G 9 9 9 G G X . n A 1 10 G 10 10 10 G G X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 C 13 13 13 C C X . n A 1 14 A 14 14 14 A A X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 A 20 20 20 A A X . n A 1 21 A 21 21 21 A A X . n A 1 22 A 22 22 22 A A X . n A 1 23 U 23 23 23 U U X . n A 1 24 U 24 24 24 U U X . n A 1 25 C 25 25 25 C C X . n A 1 26 C 26 26 26 C C X . n A 1 27 C 27 27 27 C C X . n A 1 28 G 28 28 28 G G X . n A 1 29 A 29 29 29 A A X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 G 33 33 33 G G X . n A 1 34 U 34 34 34 U U X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 U 37 37 37 U U X . n A 1 38 A 38 38 38 A A X . n A 1 39 U 39 39 39 U U X . n A 1 40 A 40 40 40 A A X . n A 1 41 G 41 41 41 G G X . n A 1 42 U 42 42 42 U U X . n A 1 43 C 43 43 43 C C X . n A 1 44 C 44 44 44 C C X . n A 1 45 A 45 45 45 A A X . n A 1 46 C 46 46 46 C C X . n A 1 47 G 47 47 47 G G X . n A 1 48 A 48 48 48 A A X . n A 1 49 A 49 49 49 A A X . n A 1 50 A 50 50 50 A A X . n A 1 51 G 51 51 51 G G X . n A 1 52 C 52 52 52 C C X . n A 1 53 U 53 53 53 U U X . n A 1 54 U 54 54 54 U U X . n B 2 1 G 1 57 57 G G Y . n B 2 2 C 2 58 58 C C Y . n B 2 3 U 3 59 59 U U Y . n B 2 4 U 4 60 60 U U Y . n B 2 5 U 5 61 61 U U Y . n B 2 6 G 6 62 62 G G Y . n B 2 7 A 7 63 63 A A Y . n B 2 8 U 8 64 64 U U Y . n B 2 9 U 9 65 65 U U Y . n B 2 10 U 10 66 66 U U Y . n B 2 11 G 11 67 67 G G Y . n B 2 12 G 12 68 68 G G Y . n B 2 13 U 13 69 69 U U Y . n B 2 14 G 14 70 70 G G Y . n B 2 15 A 15 71 71 A A Y . n B 2 16 A 16 72 72 A A Y . n B 2 17 A 17 73 73 A A Y . n B 2 18 U 18 74 74 U U Y . n B 2 19 U 19 75 75 U U Y . n B 2 20 C 20 76 76 C C Y . n B 2 21 C 21 77 77 C C Y . n B 2 22 A 22 78 78 A A Y . n B 2 23 A 23 79 79 A A Y . n B 2 24 A 24 80 80 A A Y . n B 2 25 A 25 81 81 A A Y . n B 2 26 C 26 82 82 C C Y . n B 2 27 C 27 83 83 C C Y . n B 2 28 G 28 84 84 G G Y . n B 2 29 A 29 85 85 A A Y . n B 2 30 C 30 86 86 C C Y . n B 2 31 A 31 87 87 A A Y . n B 2 32 G 32 88 88 G G Y . n B 2 33 U 33 89 89 U U Y . n B 2 34 A 34 90 90 A A Y . n B 2 35 G 35 91 91 G G Y . n B 2 36 A 36 92 92 A A Y . n B 2 37 G 37 93 93 G G Y . n B 2 38 U 38 94 94 U U Y . n B 2 39 C 39 95 95 C C Y . n B 2 40 U 40 96 96 U U Y . n B 2 41 G 41 97 97 G G Y . n B 2 42 G 42 98 98 G G Y . n B 2 43 A 43 99 99 A A Y . n B 2 44 U 44 100 100 U U Y . n B 2 45 G 45 101 101 G G Y . n B 2 46 A 46 102 102 A A Y . n B 2 47 G 47 103 103 G G Y . n B 2 48 A 48 104 104 A A Y . n B 2 49 G 49 105 105 G G Y . n B 2 50 A 50 106 106 A A Y . n B 2 51 A 51 107 107 A A Y . n B 2 52 G 52 108 108 G G Y . n B 2 53 A 53 109 109 A A Y . n B 2 54 U 54 110 110 U U Y . n B 2 55 U 55 111 111 U U Y . n B 2 56 C 56 112 112 C C Y . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 K 1 300 300 K K X . D 4 MG 1 302 302 MG MG X . E 4 MG 1 304 304 MG MG X . F 4 MG 1 306 306 MG MG X . G 4 MG 1 307 307 MG MG X . H 4 MG 1 310 310 MG MG X . I 4 MG 1 311 311 MG MG X . J 4 MG 1 312 312 MG MG X . K 4 MG 1 313 313 MG MG X . L 4 MG 1 314 314 MG MG X . M 4 MG 1 318 318 MG MG X . N 5 FMN 1 200 200 FMN FMN Y . O 4 MG 1 303 303 MG MG Y . P 4 MG 1 305 305 MG MG Y . Q 4 MG 1 309 309 MG MG Y . R 6 HOH 1 950 950 HOH HOH X . S 6 HOH 1 902 902 HOH HOH Y . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O4 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id B _pdbx_struct_conn_angle.ptnr1_label_comp_id U _pdbx_struct_conn_angle.ptnr1_label_seq_id 33 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id Y _pdbx_struct_conn_angle.ptnr1_auth_comp_id U _pdbx_struct_conn_angle.ptnr1_auth_seq_id 89 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id P _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id Y _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 305 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OP2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id B _pdbx_struct_conn_angle.ptnr3_label_comp_id A _pdbx_struct_conn_angle.ptnr3_label_seq_id 36 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id Y _pdbx_struct_conn_angle.ptnr3_auth_comp_id A _pdbx_struct_conn_angle.ptnr3_auth_seq_id 92 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 99.8 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-20 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_ref_seq_dif 3 3 'Structure model' struct_site 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 2.6540 27.2060 14.6920 1.5284 1.5899 1.8564 -0.0023 -0.0166 0.3654 3.6905 6.8812 0.7100 5.0394 1.6187 2.2103 -0.3151 -0.2217 0.5368 -2.2885 -1.4653 -0.0226 0.4583 0.9836 -0.5165 'X-RAY DIFFRACTION' 2 ? refined 44.7680 42.3070 9.2780 -0.5138 -0.1040 0.5383 0.0013 0.0083 -0.0543 4.2175 3.0408 6.9690 -0.0743 -2.3381 -0.5030 0.0032 0.0188 -0.0220 0.1657 -0.1167 -0.0907 -0.0955 -0.1225 1.0856 'X-RAY DIFFRACTION' 3 ? refined 17.3270 47.1300 17.6190 -0.2953 -0.2468 0.4973 0.0387 0.0697 -0.0170 4.7906 4.5024 2.0447 -1.4929 1.1460 -0.2822 0.1187 0.0848 -0.2035 -0.5296 -0.1464 0.2884 0.7920 -0.2192 -0.6325 'X-RAY DIFFRACTION' 4 ? refined 22.6910 33.6620 35.5530 1.0216 0.5404 1.2278 -0.2237 0.0614 0.2491 3.2470 4.1644 14.3212 -2.2767 2.9780 3.3673 -0.3323 -0.1754 0.5077 -1.4351 -0.3852 1.4024 2.2170 -1.4006 0.4205 'X-RAY DIFFRACTION' 5 ? refined 22.2650 59.9030 14.9100 -0.1103 -0.3535 0.5744 0.0570 0.1017 -0.1124 8.6668 5.8648 3.9026 -3.3296 2.9524 -0.6644 -0.2743 0.1032 0.1711 -0.4698 0.4769 0.3077 0.7470 -1.0060 -0.3522 'X-RAY DIFFRACTION' 6 ? refined 23.8390 30.8570 16.1040 -0.4159 -0.1349 1.0353 0.0521 -0.0694 0.1062 12.2229 1.1827 3.0969 -0.8309 -0.3046 0.6867 0.2012 -0.0315 -0.1697 0.2994 -2.3279 0.5640 0.0992 0.0931 -0.5306 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X 1 X 9 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 X 10 X 30 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 X 31 X 48 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 Y 57 Y 60 ? . . . . ? 'X-RAY DIFFRACTION' 5 4 X 49 X 54 ? . . . . ? 'X-RAY DIFFRACTION' 6 5 Y 61 Y 84 ? . . . . ? 'X-RAY DIFFRACTION' 7 6 Y 85 Y 112 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CBASS 'data collection' . ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X U 54 ? "C5'" ? A U 54 "C5'" 2 1 Y 1 X U 54 ? "C4'" ? A U 54 "C4'" 3 1 Y 1 X U 54 ? "O4'" ? A U 54 "O4'" 4 1 Y 1 X U 54 ? "C3'" ? A U 54 "C3'" 5 1 Y 1 X U 54 ? "O3'" ? A U 54 "O3'" 6 1 Y 1 X U 54 ? "C2'" ? A U 54 "C2'" 7 1 Y 1 X U 54 ? "O2'" ? A U 54 "O2'" 8 1 Y 1 X U 54 ? "C1'" ? A U 54 "C1'" 9 1 Y 1 X U 54 ? N1 ? A U 54 N1 10 1 Y 1 X U 54 ? C2 ? A U 54 C2 11 1 Y 1 X U 54 ? O2 ? A U 54 O2 12 1 Y 1 X U 54 ? N3 ? A U 54 N3 13 1 Y 1 X U 54 ? C4 ? A U 54 C4 14 1 Y 1 X U 54 ? O4 ? A U 54 O4 15 1 Y 1 X U 54 ? C5 ? A U 54 C5 16 1 Y 1 X U 54 ? C6 ? A U 54 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 FMN N1 N N N 73 FMN C2 C N N 74 FMN O2 O N N 75 FMN N3 N N N 76 FMN C4 C N N 77 FMN O4 O N N 78 FMN C4A C N N 79 FMN N5 N N N 80 FMN C5A C Y N 81 FMN C6 C Y N 82 FMN C7 C Y N 83 FMN C7M C N N 84 FMN C8 C Y N 85 FMN C8M C N N 86 FMN C9 C Y N 87 FMN C9A C Y N 88 FMN N10 N N N 89 FMN C10 C N N 90 FMN "C1'" C N N 91 FMN "C2'" C N S 92 FMN "O2'" O N N 93 FMN "C3'" C N S 94 FMN "O3'" O N N 95 FMN "C4'" C N R 96 FMN "O4'" O N N 97 FMN "C5'" C N N 98 FMN "O5'" O N N 99 FMN P P N N 100 FMN O1P O N N 101 FMN O2P O N N 102 FMN O3P O N N 103 FMN HN3 H N N 104 FMN H6 H N N 105 FMN HM71 H N N 106 FMN HM72 H N N 107 FMN HM73 H N N 108 FMN HM81 H N N 109 FMN HM82 H N N 110 FMN HM83 H N N 111 FMN H9 H N N 112 FMN "H1'1" H N N 113 FMN "H1'2" H N N 114 FMN "H2'" H N N 115 FMN "HO2'" H N N 116 FMN "H3'" H N N 117 FMN "HO3'" H N N 118 FMN "H4'" H N N 119 FMN "HO4'" H N N 120 FMN "H5'1" H N N 121 FMN "H5'2" H N N 122 FMN HOP2 H N N 123 FMN HOP3 H N N 124 G OP3 O N N 125 G P P N N 126 G OP1 O N N 127 G OP2 O N N 128 G "O5'" O N N 129 G "C5'" C N N 130 G "C4'" C N R 131 G "O4'" O N N 132 G "C3'" C N S 133 G "O3'" O N N 134 G "C2'" C N R 135 G "O2'" O N N 136 G "C1'" C N R 137 G N9 N Y N 138 G C8 C Y N 139 G N7 N Y N 140 G C5 C Y N 141 G C6 C N N 142 G O6 O N N 143 G N1 N N N 144 G C2 C N N 145 G N2 N N N 146 G N3 N N N 147 G C4 C Y N 148 G HOP3 H N N 149 G HOP2 H N N 150 G "H5'" H N N 151 G "H5''" H N N 152 G "H4'" H N N 153 G "H3'" H N N 154 G "HO3'" H N N 155 G "H2'" H N N 156 G "HO2'" H N N 157 G "H1'" H N N 158 G H8 H N N 159 G H1 H N N 160 G H21 H N N 161 G H22 H N N 162 HOH O O N N 163 HOH H1 H N N 164 HOH H2 H N N 165 K K K N N 166 MG MG MG N N 167 U OP3 O N N 168 U P P N N 169 U OP1 O N N 170 U OP2 O N N 171 U "O5'" O N N 172 U "C5'" C N N 173 U "C4'" C N R 174 U "O4'" O N N 175 U "C3'" C N S 176 U "O3'" O N N 177 U "C2'" C N R 178 U "O2'" O N N 179 U "C1'" C N R 180 U N1 N N N 181 U C2 C N N 182 U O2 O N N 183 U N3 N N N 184 U C4 C N N 185 U O4 O N N 186 U C5 C N N 187 U C6 C N N 188 U HOP3 H N N 189 U HOP2 H N N 190 U "H5'" H N N 191 U "H5''" H N N 192 U "H4'" H N N 193 U "H3'" H N N 194 U "HO3'" H N N 195 U "H2'" H N N 196 U "HO2'" H N N 197 U "H1'" H N N 198 U H3 H N N 199 U H5 H N N 200 U H6 H N N 201 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 FMN N1 C2 sing N N 76 FMN N1 C10 doub N N 77 FMN C2 O2 doub N N 78 FMN C2 N3 sing N N 79 FMN N3 C4 sing N N 80 FMN N3 HN3 sing N N 81 FMN C4 O4 doub N N 82 FMN C4 C4A sing N N 83 FMN C4A N5 doub N N 84 FMN C4A C10 sing N N 85 FMN N5 C5A sing N N 86 FMN C5A C6 doub Y N 87 FMN C5A C9A sing Y N 88 FMN C6 C7 sing Y N 89 FMN C6 H6 sing N N 90 FMN C7 C7M sing N N 91 FMN C7 C8 doub Y N 92 FMN C7M HM71 sing N N 93 FMN C7M HM72 sing N N 94 FMN C7M HM73 sing N N 95 FMN C8 C8M sing N N 96 FMN C8 C9 sing Y N 97 FMN C8M HM81 sing N N 98 FMN C8M HM82 sing N N 99 FMN C8M HM83 sing N N 100 FMN C9 C9A doub Y N 101 FMN C9 H9 sing N N 102 FMN C9A N10 sing N N 103 FMN N10 C10 sing N N 104 FMN N10 "C1'" sing N N 105 FMN "C1'" "C2'" sing N N 106 FMN "C1'" "H1'1" sing N N 107 FMN "C1'" "H1'2" sing N N 108 FMN "C2'" "O2'" sing N N 109 FMN "C2'" "C3'" sing N N 110 FMN "C2'" "H2'" sing N N 111 FMN "O2'" "HO2'" sing N N 112 FMN "C3'" "O3'" sing N N 113 FMN "C3'" "C4'" sing N N 114 FMN "C3'" "H3'" sing N N 115 FMN "O3'" "HO3'" sing N N 116 FMN "C4'" "O4'" sing N N 117 FMN "C4'" "C5'" sing N N 118 FMN "C4'" "H4'" sing N N 119 FMN "O4'" "HO4'" sing N N 120 FMN "C5'" "O5'" sing N N 121 FMN "C5'" "H5'1" sing N N 122 FMN "C5'" "H5'2" sing N N 123 FMN "O5'" P sing N N 124 FMN P O1P doub N N 125 FMN P O2P sing N N 126 FMN P O3P sing N N 127 FMN O2P HOP2 sing N N 128 FMN O3P HOP3 sing N N 129 G OP3 P sing N N 130 G OP3 HOP3 sing N N 131 G P OP1 doub N N 132 G P OP2 sing N N 133 G P "O5'" sing N N 134 G OP2 HOP2 sing N N 135 G "O5'" "C5'" sing N N 136 G "C5'" "C4'" sing N N 137 G "C5'" "H5'" sing N N 138 G "C5'" "H5''" sing N N 139 G "C4'" "O4'" sing N N 140 G "C4'" "C3'" sing N N 141 G "C4'" "H4'" sing N N 142 G "O4'" "C1'" sing N N 143 G "C3'" "O3'" sing N N 144 G "C3'" "C2'" sing N N 145 G "C3'" "H3'" sing N N 146 G "O3'" "HO3'" sing N N 147 G "C2'" "O2'" sing N N 148 G "C2'" "C1'" sing N N 149 G "C2'" "H2'" sing N N 150 G "O2'" "HO2'" sing N N 151 G "C1'" N9 sing N N 152 G "C1'" "H1'" sing N N 153 G N9 C8 sing Y N 154 G N9 C4 sing Y N 155 G C8 N7 doub Y N 156 G C8 H8 sing N N 157 G N7 C5 sing Y N 158 G C5 C6 sing N N 159 G C5 C4 doub Y N 160 G C6 O6 doub N N 161 G C6 N1 sing N N 162 G N1 C2 sing N N 163 G N1 H1 sing N N 164 G C2 N2 sing N N 165 G C2 N3 doub N N 166 G N2 H21 sing N N 167 G N2 H22 sing N N 168 G N3 C4 sing N N 169 HOH O H1 sing N N 170 HOH O H2 sing N N 171 U OP3 P sing N N 172 U OP3 HOP3 sing N N 173 U P OP1 doub N N 174 U P OP2 sing N N 175 U P "O5'" sing N N 176 U OP2 HOP2 sing N N 177 U "O5'" "C5'" sing N N 178 U "C5'" "C4'" sing N N 179 U "C5'" "H5'" sing N N 180 U "C5'" "H5''" sing N N 181 U "C4'" "O4'" sing N N 182 U "C4'" "C3'" sing N N 183 U "C4'" "H4'" sing N N 184 U "O4'" "C1'" sing N N 185 U "C3'" "O3'" sing N N 186 U "C3'" "C2'" sing N N 187 U "C3'" "H3'" sing N N 188 U "O3'" "HO3'" sing N N 189 U "C2'" "O2'" sing N N 190 U "C2'" "C1'" sing N N 191 U "C2'" "H2'" sing N N 192 U "O2'" "HO2'" sing N N 193 U "C1'" N1 sing N N 194 U "C1'" "H1'" sing N N 195 U N1 C2 sing N N 196 U N1 C6 sing N N 197 U C2 O2 doub N N 198 U C2 N3 sing N N 199 U N3 C4 sing N N 200 U N3 H3 sing N N 201 U C4 O4 doub N N 202 U C4 C5 sing N N 203 U C5 C6 doub N N 204 U C5 H5 sing N N 205 U C6 H6 sing N N 206 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3F4E 'double helix' 3F4E 'a-form double helix' 3F4E 'hairpin loop' 3F4E 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 56 1_555 0.937 0.090 -0.381 -1.263 -16.449 -12.384 1 X_G1:C112_Y X 1 ? Y 112 ? ? ? 1 A G 2 1_555 B U 55 1_555 -2.691 -0.643 0.354 6.289 -9.200 5.883 2 X_G2:U111_Y X 2 ? Y 111 ? 28 1 1 A A 3 1_555 B U 54 1_555 -0.984 -0.269 0.226 6.715 -19.367 1.920 3 X_A3:U110_Y X 3 ? Y 110 ? 20 1 1 A C 5 1_555 B G 52 1_555 1.355 0.105 0.400 6.023 -11.746 18.583 4 X_C5:G108_Y X 5 ? Y 108 ? ? 1 1 A U 6 1_555 B A 51 1_555 -0.183 0.164 -0.069 6.697 -12.582 9.034 5 X_U6:A107_Y X 6 ? Y 107 ? 20 1 1 A U 7 1_555 B A 50 1_555 -0.222 0.422 -0.389 15.877 -12.859 4.912 6 X_U7:A106_Y X 7 ? Y 106 ? ? ? 1 A C 8 1_555 B G 49 1_555 0.896 -0.160 0.109 7.335 -25.346 3.970 7 X_C8:G105_Y X 8 ? Y 105 ? 19 1 1 A G 9 1_555 B A 48 1_555 6.869 -4.637 0.409 -19.243 -41.028 -4.531 8 X_G9:A104_Y X 9 ? Y 104 ? ? 10 1 A G 10 1_555 A G 47 1_555 -5.271 -1.430 0.189 30.702 -19.050 71.413 9 X_G10:G47_X X 10 ? X 47 ? ? ? 1 A G 33 1_555 A C 46 1_555 0.006 -0.105 0.428 13.205 -5.697 1.619 10 X_G33:C46_X X 33 ? X 46 ? 19 1 1 A U 34 1_555 A A 45 1_555 -0.267 0.040 -0.496 9.721 -17.579 13.452 11 X_U34:A45_X X 34 ? X 45 ? 20 1 1 A G 35 1_555 A C 44 1_555 0.557 -0.111 -0.182 -13.950 -17.111 -2.719 12 X_G35:C44_X X 35 ? X 44 ? 19 1 1 A G 36 1_555 A C 43 1_555 -0.318 -0.339 -0.368 -16.190 -13.561 -1.545 13 X_G36:C43_X X 36 ? X 43 ? 19 1 1 A U 37 1_555 A A 40 1_555 4.316 -2.355 -0.715 7.339 -5.630 -97.891 14 X_U37:A40_X X 37 ? X 40 ? 24 4 1 A A 38 1_555 B G 14 1_555 -6.884 -4.701 0.557 -19.530 25.083 -7.903 15 X_A38:G70_Y X 38 ? Y 70 ? ? ? 1 B A 17 1_555 B U 13 1_555 -4.634 -1.900 -0.201 -9.244 1.100 -91.736 16 Y_A73:U69_Y Y 73 ? Y 69 ? 24 4 1 B C 20 1_555 B G 12 1_555 -0.171 -0.065 -0.367 7.450 -11.869 1.116 17 Y_C76:G68_Y Y 76 ? Y 68 ? 19 1 1 B C 21 1_555 B G 11 1_555 -0.141 -0.140 0.448 3.515 -12.589 0.579 18 Y_C77:G67_Y Y 77 ? Y 67 ? 19 1 1 B A 22 1_555 B U 10 1_555 -0.219 -0.311 -0.147 -9.608 -14.318 -0.162 19 Y_A78:U66_Y Y 78 ? Y 66 ? 20 1 1 B A 23 1_555 B U 9 1_555 0.032 -0.182 0.090 2.921 -15.229 3.862 20 Y_A79:U65_Y Y 79 ? Y 65 ? 20 1 1 B A 24 1_555 B U 8 1_555 0.197 -0.284 0.420 7.945 -0.143 10.857 21 Y_A80:U64_Y Y 80 ? Y 64 ? 20 1 1 B A 25 1_555 A U 42 1_555 0.364 0.063 -0.378 -3.006 -13.238 -3.713 22 Y_A81:U42_X Y 81 ? X 42 ? 20 1 1 B C 26 1_555 A G 41 1_555 0.491 -0.115 0.082 1.496 -22.663 8.487 23 Y_C82:G41_X Y 82 ? X 41 ? 19 1 1 B C 27 1_555 A G 32 1_555 -0.252 -0.220 0.670 -9.859 -11.757 -5.061 24 Y_C83:G32_X Y 83 ? X 32 ? 19 1 1 B G 28 1_555 A C 31 1_555 -0.342 -0.180 0.775 22.064 -17.665 -1.447 25 Y_G84:C31_X Y 84 ? X 31 ? 19 1 1 B G 37 1_555 A C 30 1_555 -0.256 -0.205 0.288 1.579 -19.600 4.603 26 Y_G93:C30_X Y 93 ? X 30 ? 19 1 1 B U 38 1_555 A A 29 1_555 -0.118 -0.124 -0.398 14.876 -10.442 -6.047 27 Y_U94:A29_X Y 94 ? X 29 ? 20 1 1 A C 13 1_555 A G 28 1_555 3.800 0.608 1.052 -16.810 -14.263 50.091 28 X_C13:G28_X X 13 ? X 28 ? ? 5 1 A G 15 1_555 A C 27 1_555 -0.285 0.247 0.231 2.544 -4.572 11.107 29 X_G15:C27_X X 15 ? X 27 ? ? 1 1 A G 16 1_555 A C 26 1_555 -0.191 -0.266 -0.200 -5.156 -13.903 -0.742 30 X_G16:C26_X X 16 ? X 26 ? 19 1 1 A G 17 1_555 A C 25 1_555 0.036 -0.045 -0.281 -20.424 -1.411 -4.807 31 X_G17:C25_X X 17 ? X 25 ? 19 1 1 A U 18 1_555 A A 22 1_555 4.350 -2.686 0.946 1.705 16.023 -88.009 32 X_U18:A22_X X 18 ? X 22 ? 24 4 1 A G 19 1_555 B A 34 1_555 6.781 -4.155 0.095 23.940 20.706 5.804 33 X_G19:A90_Y X 19 ? Y 90 ? 11 9 1 A A 49 1_555 B U 4 1_555 -3.051 -0.294 0.328 9.487 -5.248 1.373 34 X_A49:U60_Y X 49 ? Y 60 ? ? ? 1 A A 50 1_555 B U 3 1_555 0.008 -0.038 0.208 10.968 -16.384 5.363 35 X_A50:U59_Y X 50 ? Y 59 ? 20 1 1 A G 51 1_555 B C 2 1_555 -0.210 -0.175 0.052 -8.539 -19.755 4.700 36 X_G51:C58_Y X 51 ? Y 58 ? 19 1 1 A C 52 1_555 B G 1 1_555 0.772 0.028 0.273 -4.773 -15.571 14.559 37 X_C52:G57_Y X 52 ? Y 57 ? ? 1 1 B A 29 1_555 B G 42 1_555 -0.047 1.617 -0.103 5.517 -17.614 -13.810 38 Y_A85:G98_Y Y 85 ? Y 98 ? 8 ? 1 B C 30 1_555 B G 41 1_555 0.160 -0.068 0.352 13.178 -20.153 3.327 39 Y_C86:G97_Y Y 86 ? Y 97 ? 19 1 1 B A 31 1_555 B U 40 1_555 0.635 -0.121 0.525 -3.297 -23.662 5.421 40 Y_A87:U96_Y Y 87 ? Y 96 ? 20 1 1 B G 32 1_555 B C 39 1_555 0.140 0.152 0.504 -17.032 -14.749 2.281 41 Y_G88:C95_Y Y 88 ? Y 95 ? 19 1 1 B U 33 1_555 B A 36 1_555 4.324 -2.689 -0.089 15.299 6.037 -91.702 42 Y_U89:A92_Y Y 89 ? Y 92 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 56 1_555 A G 2 1_555 B U 55 1_555 0.318 -2.223 2.850 -9.165 7.698 17.257 -8.439 -3.649 1.402 22.473 26.756 20.975 1 XX_G1G2:U111C112_YY X 1 ? Y 112 ? X 2 ? Y 111 ? 1 A G 2 1_555 B U 55 1_555 A A 3 1_555 B U 54 1_555 -0.195 -1.227 3.216 1.342 3.782 42.942 -2.029 0.393 3.095 5.153 -1.829 43.120 2 XX_G2A3:U110U111_YY X 2 ? Y 111 ? X 3 ? Y 110 ? 1 A A 3 1_555 B U 54 1_555 A C 5 1_555 B G 52 1_555 0.738 -3.263 6.326 3.788 10.462 73.387 -3.326 -0.388 5.910 8.705 -3.152 74.108 3 XX_A3C5:G108U110_YY X 3 ? Y 110 ? X 5 ? Y 108 ? 1 A C 5 1_555 B G 52 1_555 A U 6 1_555 B A 51 1_555 -1.225 -1.942 3.092 3.469 5.225 22.647 -6.273 4.006 2.378 12.989 -8.623 23.489 4 XX_C5U6:A107G108_YY X 5 ? Y 108 ? X 6 ? Y 107 ? 1 A U 6 1_555 B A 51 1_555 A U 7 1_555 B A 50 1_555 -0.169 -1.145 3.096 2.390 0.759 29.793 -2.368 0.793 3.044 1.473 -4.639 29.896 5 XX_U6U7:A106A107_YY X 6 ? Y 107 ? X 7 ? Y 106 ? 1 A U 7 1_555 B A 50 1_555 A C 8 1_555 B G 49 1_555 0.512 -1.450 3.472 1.519 5.632 37.061 -3.017 -0.592 3.242 8.793 -2.371 37.501 6 XX_U7C8:G105A106_YY X 7 ? Y 106 ? X 8 ? Y 105 ? 1 A C 8 1_555 B G 49 1_555 A G 9 1_555 B A 48 1_555 -2.115 -0.224 4.468 6.829 20.222 55.475 -1.604 2.607 3.919 20.885 -7.052 59.134 7 XX_C8G9:A104G105_YY X 8 ? Y 105 ? X 9 ? Y 104 ? 1 A G 10 1_555 A G 47 1_555 A G 33 1_555 A C 46 1_555 0.013 -3.418 -2.557 124.917 -94.872 24.829 -2.012 -0.361 1.466 -52.909 -69.666 157.408 8 XX_G10G33:C46G47_XX X 10 ? X 47 ? X 33 ? X 46 ? 1 A G 33 1_555 A C 46 1_555 A U 34 1_555 A A 45 1_555 0.145 -2.336 3.356 3.906 1.603 28.909 -4.985 0.569 3.215 3.190 -7.772 29.209 9 XX_G33U34:A45C46_XX X 33 ? X 46 ? X 34 ? X 45 ? 1 A U 34 1_555 A A 45 1_555 A G 35 1_555 A C 44 1_555 -1.260 -1.387 3.885 -2.949 14.111 37.804 -3.811 1.449 3.270 20.874 4.362 40.366 10 XX_U34G35:C44A45_XX X 34 ? X 45 ? X 35 ? X 44 ? 1 A G 35 1_555 A C 44 1_555 A G 36 1_555 A C 43 1_555 0.706 -1.984 3.325 4.267 7.781 28.952 -5.307 -0.528 2.783 15.121 -8.293 30.253 11 XX_G35G36:C43C44_XX X 35 ? X 44 ? X 36 ? X 43 ? 1 A G 36 1_555 A C 43 1_555 A U 37 1_555 A A 40 1_555 -1.001 -1.479 2.700 9.747 6.030 84.009 -1.211 0.925 2.504 4.487 -7.253 84.643 12 XX_G36U37:A40C43_XX X 36 ? X 43 ? X 37 ? X 40 ? 1 A A 38 1_555 B G 14 1_555 B A 17 1_555 B U 13 1_555 -0.933 -0.536 3.187 -3.810 3.005 -0.142 -14.116 -36.940 -0.308 -54.694 -69.356 -4.855 13 XY_A38A73:U69G70_YY X 38 ? Y 70 ? Y 73 ? Y 69 ? 1 B A 17 1_555 B U 13 1_555 B C 20 1_555 B G 12 1_555 2.752 -1.559 3.076 -1.207 3.912 72.007 -1.445 -2.375 2.959 3.324 1.026 72.107 14 YY_A73C76:G68U69_YY Y 73 ? Y 69 ? Y 76 ? Y 68 ? 1 B C 20 1_555 B G 12 1_555 B C 21 1_555 B G 11 1_555 -0.346 -1.788 3.243 -9.159 7.396 36.856 -3.574 -0.555 2.848 11.348 14.053 38.628 15 YY_C76C77:G67G68_YY Y 76 ? Y 68 ? Y 77 ? Y 67 ? 1 B C 21 1_555 B G 11 1_555 B A 22 1_555 B U 10 1_555 -0.264 -1.659 3.361 3.807 11.289 32.953 -4.367 0.982 2.623 19.138 -6.454 34.984 16 YY_C77A78:U66G67_YY Y 77 ? Y 67 ? Y 78 ? Y 66 ? 1 B A 22 1_555 B U 10 1_555 B A 23 1_555 B U 9 1_555 0.718 -1.346 2.936 3.786 5.759 30.317 -3.477 -0.707 2.709 10.835 -7.124 31.073 17 YY_A78A79:U65U66_YY Y 78 ? Y 66 ? Y 79 ? Y 65 ? 1 B A 23 1_555 B U 9 1_555 B A 24 1_555 B U 8 1_555 0.811 -0.610 3.103 1.046 1.382 32.328 -1.326 -1.279 3.099 2.479 -1.877 32.374 18 YY_A79A80:U64U65_YY Y 79 ? Y 65 ? Y 80 ? Y 64 ? 1 B A 24 1_555 B U 8 1_555 B A 25 1_555 A U 42 1_555 -0.321 -2.869 3.368 8.288 9.423 24.643 -7.990 2.413 1.953 20.469 -18.003 27.611 19 YY_A80A81:U42U64_XY Y 80 ? Y 64 ? Y 81 ? X 42 ? 1 B A 25 1_555 A U 42 1_555 B C 26 1_555 A G 41 1_555 1.156 -1.638 2.997 -0.434 4.282 38.411 -2.944 -1.795 2.792 6.483 0.658 38.643 20 YY_A81C82:G41U42_XX Y 81 ? X 42 ? Y 82 ? X 41 ? 1 B C 26 1_555 A G 41 1_555 B C 27 1_555 A G 32 1_555 -1.087 -1.733 3.537 -3.593 5.245 28.008 -4.741 1.340 3.276 10.664 7.305 28.706 21 YY_C82C83:G32G41_XX Y 82 ? X 41 ? Y 83 ? X 32 ? 1 B C 27 1_555 A G 32 1_555 B G 28 1_555 A C 31 1_555 0.104 0.024 2.619 -1.529 4.527 32.755 -0.570 -0.390 2.592 7.975 2.693 33.092 22 YY_C83G84:C31G32_XX Y 83 ? X 32 ? Y 84 ? X 31 ? 1 B G 28 1_555 A C 31 1_555 B G 37 1_555 A C 30 1_555 1.652 -1.787 3.661 3.913 16.133 24.058 -7.065 -2.429 2.275 34.007 -8.248 29.161 23 YY_G84G93:C30C31_XX Y 84 ? X 31 ? Y 93 ? X 30 ? 1 B G 37 1_555 A C 30 1_555 B U 38 1_555 A A 29 1_555 -1.091 -1.407 2.764 0.792 1.327 37.719 -2.318 1.772 2.692 2.051 -1.225 37.749 24 YY_G93U94:A29C30_XX Y 93 ? X 30 ? Y 94 ? X 29 ? 1 B U 38 1_555 A A 29 1_555 A C 13 1_555 A G 28 1_555 1.786 -1.322 3.921 -3.394 3.912 54.483 -1.713 -2.182 3.716 4.262 3.698 54.710 25 YX_U94C13:G28A29_XX Y 94 ? X 29 ? X 13 ? X 28 ? 1 A C 13 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -5.914 0.519 2.748 0.981 0.855 35.587 0.747 9.787 2.601 1.399 -1.605 35.610 26 XX_C13G15:C27G28_XX X 13 ? X 28 ? X 15 ? X 27 ? 1 A G 15 1_555 A C 27 1_555 A G 16 1_555 A C 26 1_555 0.392 -2.654 3.280 3.079 8.849 24.437 -7.963 -0.136 2.230 19.991 -6.955 26.147 27 XX_G15G16:C26C27_XX X 15 ? X 27 ? X 16 ? X 26 ? 1 A G 16 1_555 A C 26 1_555 A G 17 1_555 A C 25 1_555 -0.428 -2.312 3.327 1.509 11.535 38.918 -4.517 0.772 2.551 16.859 -2.205 40.555 28 XX_G16G17:C25C26_XX X 16 ? X 26 ? X 17 ? X 25 ? 1 A G 17 1_555 A C 25 1_555 A U 18 1_555 A A 22 1_555 -2.332 -1.690 3.007 -1.781 1.175 73.850 -1.441 1.889 3.031 0.978 1.482 73.876 29 XX_G17U18:A22C25_XX X 17 ? X 25 ? X 18 ? X 22 ? 1 A U 18 1_555 A A 22 1_555 A G 19 1_555 B A 34 1_555 1.548 -0.504 2.744 4.439 -1.459 -2.417 10.786 32.988 -0.185 19.572 59.524 -5.260 30 XX_U18G19:A90A22_YX X 18 ? X 22 ? X 19 ? Y 90 ? 1 A A 49 1_555 B U 4 1_555 A A 50 1_555 B U 3 1_555 0.080 -1.028 3.203 -0.877 6.601 43.743 -1.955 -0.185 3.022 8.799 1.170 44.222 31 XX_A49A50:U59U60_YY X 49 ? Y 60 ? X 50 ? Y 59 ? 1 A A 50 1_555 B U 3 1_555 A G 51 1_555 B C 2 1_555 -0.049 -2.016 3.540 0.763 13.277 31.639 -5.439 0.199 2.514 23.116 -1.328 34.254 32 XX_A50G51:C58U59_YY X 50 ? Y 59 ? X 51 ? Y 58 ? 1 A G 51 1_555 B C 2 1_555 A C 52 1_555 B G 1 1_555 0.336 -1.215 3.099 -0.214 1.992 34.690 -2.320 -0.594 3.025 3.337 0.358 34.746 33 XX_G51C52:G57C58_YY X 51 ? Y 58 ? X 52 ? Y 57 ? 1 B A 29 1_555 B G 42 1_555 B C 30 1_555 B G 41 1_555 1.066 -0.966 3.048 -8.889 3.203 33.963 -2.016 -2.925 2.597 5.356 14.863 35.216 34 YY_A85C86:G97G98_YY Y 85 ? Y 98 ? Y 86 ? Y 97 ? 1 B C 30 1_555 B G 41 1_555 B A 31 1_555 B U 40 1_555 -0.404 -1.792 3.165 -2.759 15.049 38.725 -3.930 0.312 2.362 21.693 3.977 41.530 35 YY_C86A87:U96G97_YY Y 86 ? Y 97 ? Y 87 ? Y 96 ? 1 B A 31 1_555 B U 40 1_555 B G 32 1_555 B C 39 1_555 -0.071 -1.789 3.371 4.570 8.542 34.286 -4.129 0.759 2.826 14.144 -7.567 35.589 36 YY_A87G88:C95U96_YY Y 87 ? Y 96 ? Y 88 ? Y 95 ? 1 B G 32 1_555 B C 39 1_555 B U 33 1_555 B A 36 1_555 -1.129 -0.795 2.546 9.126 -1.693 79.799 -0.582 1.059 2.441 -1.316 -7.091 80.247 37 YY_G88U89:A92C95_YY Y 88 ? Y 95 ? Y 89 ? Y 92 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'POTASSIUM ION' K 4 'MAGNESIUM ION' MG 5 'FLAVIN MONONUCLEOTIDE' FMN 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3F2Q _pdbx_initial_refinement_model.details ? #