HEADER CYTOKINE 05-NOV-08 3F62 TITLE CRYSTAL STRUCTURE OF HUMAN IL-18 IN COMPLEX WITH ECTROMELIA VIRUS IL- TITLE 2 18 BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN 18 BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 21-126; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INTERLEUKIN-18; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 37-193; COMPND 10 SYNONYM: IL-18, INTERFERON-GAMMA-INDUCING FACTOR, IFN-GAMMA-INDUCING COMPND 11 FACTOR, INTERLEUKIN-1 GAMMA, IL-1 GAMMA, IBOCTADEKIN; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ECTROMELIA VIRUS; SOURCE 3 ORGANISM_TAXID: 12643; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: IL18, IGIF, IL1F4; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS IMMUNOGLOBULIN, IL-18, BETA TREFOIL, CYTOKINE, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR B.E.KRUMM,Y.LI,J.DENG REVDAT 5 27-DEC-23 3F62 1 REMARK REVDAT 4 20-OCT-21 3F62 1 SEQADV REVDAT 3 13-JUL-11 3F62 1 VERSN REVDAT 2 13-JAN-09 3F62 1 JRNL REVDAT 1 06-JAN-09 3F62 0 JRNL AUTH B.KRUMM,X.MENG,Y.LI,Y.XIANG,J.DENG JRNL TITL STRUCTURAL BASIS FOR ANTAGONISM OF HUMAN INTERLEUKIN 18 BY JRNL TITL 2 POXVIRUS INTERLEUKIN 18-BINDING PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 20711 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 19104048 JRNL DOI 10.1073/PNAS.0809086106 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 17333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1016 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2026 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.260 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1957 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2636 ; 1.377 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 248 ; 6.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;30.206 ;24.051 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 327 ;13.830 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.655 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 297 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1444 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 747 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1332 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 150 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.169 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.128 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1280 ; 0.859 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1997 ; 1.316 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 769 ; 2.193 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 639 ; 3.304 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 18 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8423 12.1492 -8.4164 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.0585 REMARK 3 T33: 0.0127 T12: -0.0021 REMARK 3 T13: 0.0087 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.4928 L22: 5.8840 REMARK 3 L33: 1.1422 L12: -3.7238 REMARK 3 L13: 0.3982 L23: -0.7672 REMARK 3 S TENSOR REMARK 3 S11: 0.2342 S12: 0.3892 S13: 0.0883 REMARK 3 S21: -0.2753 S22: -0.2864 S23: -0.1373 REMARK 3 S31: 0.0329 S32: 0.0557 S33: 0.0522 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1799 1.1049 3.1811 REMARK 3 T TENSOR REMARK 3 T11: 0.0623 T22: 0.0539 REMARK 3 T33: 0.0597 T12: -0.0170 REMARK 3 T13: 0.0027 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.4370 L22: 4.0833 REMARK 3 L33: 2.3704 L12: -1.4729 REMARK 3 L13: -0.0196 L23: 0.5134 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: -0.0825 S13: -0.1055 REMARK 3 S21: 0.1542 S22: 0.0042 S23: 0.1064 REMARK 3 S31: 0.3073 S32: -0.0678 S33: 0.0090 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4566 10.5749 0.5766 REMARK 3 T TENSOR REMARK 3 T11: 0.0468 T22: 0.0600 REMARK 3 T33: 0.0682 T12: -0.0126 REMARK 3 T13: -0.0008 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.9553 L22: 4.0350 REMARK 3 L33: 3.1328 L12: -0.5042 REMARK 3 L13: -0.4613 L23: 0.4771 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: 0.0325 S13: 0.0147 REMARK 3 S21: -0.0799 S22: -0.0621 S23: -0.0200 REMARK 3 S31: 0.0552 S32: 0.0277 S33: 0.0405 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6180 -1.7985 -2.6749 REMARK 3 T TENSOR REMARK 3 T11: 0.0885 T22: 0.0258 REMARK 3 T33: 0.0767 T12: -0.0223 REMARK 3 T13: -0.0065 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 2.4664 L22: 4.8701 REMARK 3 L33: 3.0275 L12: -3.0481 REMARK 3 L13: -1.7393 L23: 2.2798 REMARK 3 S TENSOR REMARK 3 S11: 0.0695 S12: 0.1776 S13: -0.1489 REMARK 3 S21: -0.1456 S22: -0.0872 S23: 0.1236 REMARK 3 S31: 0.1901 S32: -0.1365 S33: 0.0177 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 46 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7315 13.3672 27.5442 REMARK 3 T TENSOR REMARK 3 T11: 0.0536 T22: 0.0599 REMARK 3 T33: 0.0123 T12: 0.0110 REMARK 3 T13: -0.0161 T23: 0.0299 REMARK 3 L TENSOR REMARK 3 L11: 1.6966 L22: 1.8861 REMARK 3 L33: 3.4504 L12: -0.6133 REMARK 3 L13: -1.3136 L23: 1.3428 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: -0.2220 S13: 0.1013 REMARK 3 S21: 0.0557 S22: 0.0061 S23: -0.0068 REMARK 3 S31: -0.2111 S32: 0.0505 S33: -0.0622 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 47 B 70 REMARK 3 ORIGIN FOR THE GROUP (A): 11.3921 5.5462 18.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.0657 REMARK 3 T33: 0.0557 T12: -0.0016 REMARK 3 T13: 0.0293 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.8729 L22: 6.1562 REMARK 3 L33: 7.2594 L12: 0.5425 REMARK 3 L13: -0.2999 L23: 4.4394 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.1394 S13: -0.0070 REMARK 3 S21: 0.1795 S22: -0.0351 S23: -0.0015 REMARK 3 S31: 0.1715 S32: 0.0756 S33: 0.0522 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 71 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4497 1.4401 23.0638 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.0375 REMARK 3 T33: 0.0445 T12: -0.0046 REMARK 3 T13: 0.0232 T23: 0.0473 REMARK 3 L TENSOR REMARK 3 L11: 2.5565 L22: 2.4570 REMARK 3 L33: 2.5651 L12: -0.8612 REMARK 3 L13: 0.0870 L23: 0.6416 REMARK 3 S TENSOR REMARK 3 S11: -0.1021 S12: -0.1420 S13: -0.2462 REMARK 3 S21: 0.1284 S22: 0.0463 S23: 0.0513 REMARK 3 S31: 0.3794 S32: 0.0007 S33: 0.0557 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 105 B 155 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2590 12.8138 20.3299 REMARK 3 T TENSOR REMARK 3 T11: 0.0121 T22: 0.0760 REMARK 3 T33: 0.0261 T12: -0.0017 REMARK 3 T13: -0.0051 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.9815 L22: 2.6565 REMARK 3 L33: 2.4903 L12: -0.0233 REMARK 3 L13: -0.6461 L23: -0.4139 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: -0.1743 S13: 0.0080 REMARK 3 S21: 0.0155 S22: 0.1063 S23: 0.1990 REMARK 3 S31: -0.1415 S32: -0.1973 S33: -0.0929 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6500 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17333 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 12.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.56800 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 3350, 0.5M KCL, 0.1M SODIUM REMARK 280 CITRATE, PH 4.5, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.17800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.41600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.41600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.17800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 126 REMARK 465 MET B 33 REMARK 465 THR B 34 REMARK 465 ASP B 35 REMARK 465 SER B 36 REMARK 465 ASP B 37 REMARK 465 SER B 38 REMARK 465 ARG B 39 REMARK 465 ASP B 40 REMARK 465 ASN B 41 REMARK 465 GLU B 130 REMARK 465 ARG B 131 REMARK 465 ASP B 132 REMARK 465 ASP B 157 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 57 NZ REMARK 480 GLU A 63 CG CD OE1 OE2 REMARK 480 ASP A 64 OD1 OD2 REMARK 480 LYS A 66 CE NZ REMARK 480 ASP A 85 OD2 REMARK 480 LYS B 8 CE NZ REMARK 480 LEU B 15 CB CG CD1 CD2 REMARK 480 ARG B 44 CD REMARK 480 LYS B 67 CD CE NZ REMARK 480 GLU B 69 CB CG CD OE1 OE2 REMARK 480 LYS B 70 CB CG CD CE NZ REMARK 480 GLU B 77 CG REMARK 480 LYS B 84 CD CE NZ REMARK 480 ASN B 87 ND2 REMARK 480 LYS B 93 CG CD CE NZ REMARK 480 LYS B 96 CD CE NZ REMARK 480 ASP B 98 OD2 REMARK 480 GLU B 121 CG CD OE1 OE2 REMARK 480 GLU B 128 OE2 REMARK 480 LYS B 129 CG CD CE NZ REMARK 480 LEU B 133 CB CG CD1 CD2 REMARK 480 LYS B 140 NZ REMARK 480 GLU B 143 CG CD OE1 OE2 REMARK 480 LEU B 144 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 93 CB LYS B 93 CG -0.179 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 64 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ASP A 64 CB - CG - OD2 ANGL. DEV. = -8.9 DEGREES REMARK 500 GLU B 69 CB - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 LYS B 70 N - CA - CB ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 5 -146.12 -119.57 REMARK 500 GLN B 56 77.86 -118.97 REMARK 500 GLU B 69 -15.66 80.53 REMARK 500 LYS B 140 122.29 -36.22 REMARK 500 REMARK 500 REMARK: NULL DBREF 3F62 A 21 126 UNP Q9IW12 Q9IW12_9POXV 21 126 DBREF 3F62 B 1 157 UNP Q14116 IL18_HUMAN 37 193 SEQADV 3F62 GLY A 18 UNP Q9IW12 EXPRESSION TAG SEQADV 3F62 ALA A 19 UNP Q9IW12 EXPRESSION TAG SEQADV 3F62 MET A 20 UNP Q9IW12 EXPRESSION TAG SEQADV 3F62 GLY B 0 UNP Q14116 EXPRESSION TAG SEQADV 3F62 SER B 38 UNP Q14116 CYS 74 ENGINEERED MUTATION SEQADV 3F62 SER B 68 UNP Q14116 CYS 104 ENGINEERED MUTATION SEQADV 3F62 SER B 76 UNP Q14116 CYS 112 ENGINEERED MUTATION SEQADV 3F62 SER B 127 UNP Q14116 CYS 163 ENGINEERED MUTATION SEQRES 1 A 109 GLY ALA MET VAL GLU THR LYS CYS PRO ASN LEU ASP ILE SEQRES 2 A 109 VAL THR SER SER GLY GLU PHE HIS CYS SER GLY CYS VAL SEQRES 3 A 109 GLU HIS MET PRO GLU PHE SER TYR MET TYR TRP LEU ALA SEQRES 4 A 109 LYS ASP MET LYS SER ASP GLU ASP THR LYS PHE ILE GLU SEQRES 5 A 109 HIS LEU GLY ASP GLY ILE ASN GLU ASP GLU THR VAL ARG SEQRES 6 A 109 THR THR ASP GLY GLY ILE THR THR LEU ARG LYS VAL LEU SEQRES 7 A 109 HIS VAL THR ASP THR ASN LYS PHE ALA HIS TYR ARG PHE SEQRES 8 A 109 THR CYS VAL LEU THR THR LEU ASP GLY VAL SER LYS LYS SEQRES 9 A 109 ASN ILE TRP LEU LYS SEQRES 1 B 158 GLY TYR PHE GLY LYS LEU GLU SER LYS LEU SER VAL ILE SEQRES 2 B 158 ARG ASN LEU ASN ASP GLN VAL LEU PHE ILE ASP GLN GLY SEQRES 3 B 158 ASN ARG PRO LEU PHE GLU ASP MET THR ASP SER ASP SER SEQRES 4 B 158 ARG ASP ASN ALA PRO ARG THR ILE PHE ILE ILE SER MET SEQRES 5 B 158 TYR LYS ASP SER GLN PRO ARG GLY MET ALA VAL THR ILE SEQRES 6 B 158 SER VAL LYS SER GLU LYS ILE SER THR LEU SER SER GLU SEQRES 7 B 158 ASN LYS ILE ILE SER PHE LYS GLU MET ASN PRO PRO ASP SEQRES 8 B 158 ASN ILE LYS ASP THR LYS SER ASP ILE ILE PHE PHE GLN SEQRES 9 B 158 ARG SER VAL PRO GLY HIS ASP ASN LYS MET GLN PHE GLU SEQRES 10 B 158 SER SER SER TYR GLU GLY TYR PHE LEU ALA SER GLU LYS SEQRES 11 B 158 GLU ARG ASP LEU PHE LYS LEU ILE LEU LYS LYS GLU ASP SEQRES 12 B 158 GLU LEU GLY ASP ARG SER ILE MET PHE THR VAL GLN ASN SEQRES 13 B 158 GLU ASP FORMUL 3 HOH *120(H2 O) HELIX 1 1 ILE A 68 HIS A 70 1 3 HELIX 2 2 PRO B 43 THR B 45 1 3 HELIX 3 3 GLU B 77 LYS B 79 1 3 HELIX 4 4 ARG B 147 ILE B 149 1 3 SHEET 1 1 1 ASP A 29 SER A 33 0 SHEET 1 2 1 GLU A 36 VAL A 43 0 SHEET 1 3 1 TYR A 51 ASP A 58 0 SHEET 1 4 1 LYS A 66 PHE A 67 0 SHEET 1 5 1 ILE A 75 GLU A 77 0 SHEET 1 6 1 VAL A 81 ASP A 85 0 SHEET 1 7 1 ILE A 88 VAL A 97 0 SHEET 1 8 1 TYR A 106 THR A 114 0 SHEET 1 9 1 GLY A 117 ILE A 123 0 SHEET 1 10 1 PHE B 2 ARG B 13 0 SHEET 1 11 1 VAL B 19 ILE B 22 0 SHEET 1 12 1 PRO B 28 GLU B 31 0 SHEET 1 13 1 PHE B 47 ASP B 54 0 SHEET 1 14 1 MET B 60 LYS B 67 0 SHEET 1 15 1 ILE B 71 SER B 75 0 SHEET 1 16 1 SER B 82 GLU B 85 0 SHEET 1 17 1 ASN B 91 ILE B 92 0 SHEET 1 18 1 PHE B 101 VAL B 106 0 SHEET 1 19 1 HIS B 109 SER B 117 0 SHEET 1 20 1 TYR B 123 GLU B 128 0 SHEET 1 21 1 LYS B 135 LYS B 140 0 SHEET 1 22 1 THR B 152 ASN B 155 0 SSBOND 1 CYS A 25 CYS A 42 1555 1555 2.78 SSBOND 2 CYS A 39 CYS A 110 1555 1555 2.07 CISPEP 1 CYS A 25 PRO A 26 0 7.17 CRYST1 36.356 69.210 104.832 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027506 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009539 0.00000