data_3F7C # _entry.id 3F7C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3F7C pdb_00003f7c 10.2210/pdb3f7c/pdb RCSB RCSB050237 ? ? WWPDB D_1000050237 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 394855 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3F7C _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-11-07 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of protein of unknown function (DUF416) (YP_958225.1) from MARINOBACTER AQUAEOLEI VT8 at 2.00 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3F7C _cell.length_a 76.998 _cell.length_b 76.998 _cell.length_c 91.260 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3F7C _symmetry.Int_Tables_number 172 _symmetry.space_group_name_H-M 'P 64' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'protein of unknown function (DUF416)' 22778.768 1 ? 'K168Y, K169Y, Q170Y' ? ? 2 non-polymer syn 'CITRIC ACID' 192.124 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 121 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)NANQFLKAVSQLQGWRECAFLLALAERSFPNYALFADAVGLKTGGK(MSE)RQLLDLAWD(MSE)LQKDVADAA IPQLLSKLETLCPNVDEYDAYGVYPAFDFCQLLEQALLNRLNPNKHRATEASQLATRTV(MSE)DFVE(MSE)SEGEG (MSE)DENELVRVFEHHPLLKDDKLFQRDTV(MSE)ALYYYRTPKEAFLAELRAGAANDGVSNLGISLEG ; _entity_poly.pdbx_seq_one_letter_code_can ;GMNANQFLKAVSQLQGWRECAFLLALAERSFPNYALFADAVGLKTGGKMRQLLDLAWDMLQKDVADAAIPQLLSKLETLC PNVDEYDAYGVYPAFDFCQLLEQALLNRLNPNKHRATEASQLATRTVMDFVEMSEGEGMDENELVRVFEHHPLLKDDKLF QRDTVMALYYYRTPKEAFLAELRAGAANDGVSNLGISLEG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 394855 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 ASN n 1 4 ALA n 1 5 ASN n 1 6 GLN n 1 7 PHE n 1 8 LEU n 1 9 LYS n 1 10 ALA n 1 11 VAL n 1 12 SER n 1 13 GLN n 1 14 LEU n 1 15 GLN n 1 16 GLY n 1 17 TRP n 1 18 ARG n 1 19 GLU n 1 20 CYS n 1 21 ALA n 1 22 PHE n 1 23 LEU n 1 24 LEU n 1 25 ALA n 1 26 LEU n 1 27 ALA n 1 28 GLU n 1 29 ARG n 1 30 SER n 1 31 PHE n 1 32 PRO n 1 33 ASN n 1 34 TYR n 1 35 ALA n 1 36 LEU n 1 37 PHE n 1 38 ALA n 1 39 ASP n 1 40 ALA n 1 41 VAL n 1 42 GLY n 1 43 LEU n 1 44 LYS n 1 45 THR n 1 46 GLY n 1 47 GLY n 1 48 LYS n 1 49 MSE n 1 50 ARG n 1 51 GLN n 1 52 LEU n 1 53 LEU n 1 54 ASP n 1 55 LEU n 1 56 ALA n 1 57 TRP n 1 58 ASP n 1 59 MSE n 1 60 LEU n 1 61 GLN n 1 62 LYS n 1 63 ASP n 1 64 VAL n 1 65 ALA n 1 66 ASP n 1 67 ALA n 1 68 ALA n 1 69 ILE n 1 70 PRO n 1 71 GLN n 1 72 LEU n 1 73 LEU n 1 74 SER n 1 75 LYS n 1 76 LEU n 1 77 GLU n 1 78 THR n 1 79 LEU n 1 80 CYS n 1 81 PRO n 1 82 ASN n 1 83 VAL n 1 84 ASP n 1 85 GLU n 1 86 TYR n 1 87 ASP n 1 88 ALA n 1 89 TYR n 1 90 GLY n 1 91 VAL n 1 92 TYR n 1 93 PRO n 1 94 ALA n 1 95 PHE n 1 96 ASP n 1 97 PHE n 1 98 CYS n 1 99 GLN n 1 100 LEU n 1 101 LEU n 1 102 GLU n 1 103 GLN n 1 104 ALA n 1 105 LEU n 1 106 LEU n 1 107 ASN n 1 108 ARG n 1 109 LEU n 1 110 ASN n 1 111 PRO n 1 112 ASN n 1 113 LYS n 1 114 HIS n 1 115 ARG n 1 116 ALA n 1 117 THR n 1 118 GLU n 1 119 ALA n 1 120 SER n 1 121 GLN n 1 122 LEU n 1 123 ALA n 1 124 THR n 1 125 ARG n 1 126 THR n 1 127 VAL n 1 128 MSE n 1 129 ASP n 1 130 PHE n 1 131 VAL n 1 132 GLU n 1 133 MSE n 1 134 SER n 1 135 GLU n 1 136 GLY n 1 137 GLU n 1 138 GLY n 1 139 MSE n 1 140 ASP n 1 141 GLU n 1 142 ASN n 1 143 GLU n 1 144 LEU n 1 145 VAL n 1 146 ARG n 1 147 VAL n 1 148 PHE n 1 149 GLU n 1 150 HIS n 1 151 HIS n 1 152 PRO n 1 153 LEU n 1 154 LEU n 1 155 LYS n 1 156 ASP n 1 157 ASP n 1 158 LYS n 1 159 LEU n 1 160 PHE n 1 161 GLN n 1 162 ARG n 1 163 ASP n 1 164 THR n 1 165 VAL n 1 166 MSE n 1 167 ALA n 1 168 LEU n 1 169 TYR n 1 170 TYR n 1 171 TYR n 1 172 ARG n 1 173 THR n 1 174 PRO n 1 175 LYS n 1 176 GLU n 1 177 ALA n 1 178 PHE n 1 179 LEU n 1 180 ALA n 1 181 GLU n 1 182 LEU n 1 183 ARG n 1 184 ALA n 1 185 GLY n 1 186 ALA n 1 187 ALA n 1 188 ASN n 1 189 ASP n 1 190 GLY n 1 191 VAL n 1 192 SER n 1 193 ASN n 1 194 LEU n 1 195 GLY n 1 196 ILE n 1 197 SER n 1 198 LEU n 1 199 GLU n 1 200 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Marinobacter hydrocarbonoclasticus (strain DSM 11845)' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Maqu_0942, YP_958225.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Marinobacter aquaeolei VT8' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 351348 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A1TZ69_MARAV _struct_ref.pdbx_db_accession A1TZ69 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNANQFLKAVSQLQGWRECAFLLALAERSFPNYALFADAVGLKTGGKMRQLLDLAWDMLQKDVADAAIPQLLSKLETLCP NVDEYDAYGVYPAFDFCQLLEQALLNRLNPNKHRATEASQLATRTVMDFVEMSEGEGMDENELVRVFEHHPLLKDDKLFQ RDTVMALKKQRTPKEAFLAELRAGAANDGVSNLGISLEG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3F7C _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 200 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A1TZ69 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 199 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 199 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3F7C GLY A 1 ? UNP A1TZ69 ? ? 'expression tag' 0 1 1 3F7C TYR A 169 ? UNP A1TZ69 LYS 168 'SEE REMARK 999' 168 2 1 3F7C TYR A 170 ? UNP A1TZ69 LYS 169 'SEE REMARK 999' 169 3 1 3F7C TYR A 171 ? UNP A1TZ69 GLN 170 'SEE REMARK 999' 170 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CIT non-polymer . 'CITRIC ACID' ? 'C6 H8 O7' 192.124 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3F7C # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.43 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 64.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 9.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '1.0M sodium citrate, 0.1M CHES pH 9.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.details 'Adjustable focusing mirrors in K-B geometry' _diffrn_detector.pdbx_collection_date 2008-10-12 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si(111) Double Crystal Monochrometer' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.94645 1.0 2 0.97967 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_wavelength_list 0.94645,0.97967 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS # _reflns.entry_id 3F7C _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 29.424 _reflns.number_obs 20811 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_netI_over_sigmaI 4.107 _reflns.pdbx_Rsym_value 0.089 _reflns.pdbx_redundancy 7.400 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 37.979 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.00 2.05 ? 8658 ? 0.835 0.9 0.835 ? 5.70 ? 1510 99.80 1 1 2.05 2.11 ? 8489 ? 0.697 0.6 0.697 ? 5.60 ? 1511 100.00 2 1 2.11 2.17 ? 8364 ? 0.484 1.5 0.484 ? 5.70 ? 1457 100.00 3 1 2.17 2.24 ? 8124 ? 0.382 1.9 0.382 ? 5.80 ? 1410 100.00 4 1 2.24 2.31 ? 7651 ? 0.382 0.8 0.382 ? 5.70 ? 1354 100.00 5 1 2.31 2.39 ? 7695 ? 0.240 2.9 0.240 ? 5.80 ? 1334 100.00 6 1 2.39 2.48 ? 7390 ? 0.183 3.9 0.183 ? 5.70 ? 1287 100.00 7 1 2.48 2.58 ? 7067 ? 0.158 4.4 0.158 ? 5.80 ? 1225 100.00 8 1 2.58 2.70 ? 6756 ? 0.141 4.2 0.141 ? 5.70 ? 1177 100.00 9 1 2.70 2.83 ? 6576 ? 0.111 6.1 0.111 ? 5.80 ? 1141 100.00 10 1 2.83 2.98 ? 8619 ? 0.114 6.0 0.114 ? 8.00 ? 1076 100.00 11 1 2.98 3.16 ? 9024 ? 0.112 5.6 0.112 ? 9.00 ? 1006 100.00 12 1 3.16 3.38 ? 10203 ? 0.092 6.5 0.092 ? 10.60 ? 963 100.00 13 1 3.38 3.65 ? 10101 ? 0.084 6.4 0.084 ? 11.30 ? 896 100.00 14 1 3.65 4.00 ? 9209 ? 0.075 8.1 0.075 ? 11.30 ? 813 100.00 15 1 4.00 4.47 ? 8517 ? 0.072 8.3 0.072 ? 11.40 ? 747 100.00 16 1 4.47 5.16 ? 7543 ? 0.069 8.5 0.069 ? 11.30 ? 668 100.00 17 1 5.16 6.32 ? 6267 ? 0.075 8.3 0.075 ? 11.30 ? 554 100.00 18 1 6.32 8.94 ? 4830 ? 0.073 5.7 0.073 ? 11.00 ? 439 100.00 19 1 8.94 29.43 ? 2471 ? 0.085 5.3 0.085 ? 10.20 ? 243 97.30 20 1 # _refine.entry_id 3F7C _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 29.424 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.920 _refine.ls_number_reflns_obs 20774 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 4. CITRATE AND SODIUM MODELED ARE PRESENT IN CRYSTALLIZATION CONDITION. 5. THERE ARE SOME UNMODELED NON-PROTEIN DENSITIES NEAR RESIDUE A19. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.173 _refine.ls_R_factor_R_work 0.172 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.196 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1067 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 35.327 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.130 _refine.aniso_B[2][2] -0.130 _refine.aniso_B[3][3] 0.190 _refine.aniso_B[1][2] -0.060 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.128 _refine.pdbx_overall_ESU_R_Free 0.118 _refine.overall_SU_ML 0.077 _refine.overall_SU_B 6.148 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 75.91 _refine.B_iso_min 20.62 _refine.occupancy_max 1.00 _refine.occupancy_min 0.20 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1564 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 1699 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 29.424 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1624 0.016 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1090 0.002 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2203 1.503 1.978 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 2656 0.926 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 204 4.904 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 80 32.655 24.500 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 277 12.881 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 11 12.810 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 242 0.086 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1833 0.007 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 332 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 999 1.884 3.000 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 404 0.553 3.000 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1591 3.142 5.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 625 5.510 8.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 609 7.903 11.000 ? ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.800 _refine_ls_shell.number_reflns_R_work 1431 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.274 _refine_ls_shell.R_factor_R_free 0.328 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 79 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1510 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3F7C _struct.title 'Crystal structure of a duf416 family protein (maqu_0942) from marinobacter aquaeolei vt8 at 2.00 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, unknown function' _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 3F7C # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 6 ? GLN A 13 ? GLN A 5 GLN A 12 1 ? 8 HELX_P HELX_P2 2 GLN A 15 ? VAL A 41 ? GLN A 14 VAL A 40 1 ? 27 HELX_P HELX_P3 3 THR A 45 ? LEU A 60 ? THR A 44 LEU A 59 1 ? 16 HELX_P HELX_P4 4 ALA A 65 ? ALA A 67 ? ALA A 64 ALA A 66 5 ? 3 HELX_P HELX_P5 5 ALA A 68 ? CYS A 80 ? ALA A 67 CYS A 79 1 ? 13 HELX_P HELX_P6 6 ASN A 82 ? TYR A 86 ? ASN A 81 TYR A 85 5 ? 5 HELX_P HELX_P7 7 GLY A 90 ? ASN A 110 ? GLY A 89 ASN A 109 1 ? 21 HELX_P HELX_P8 8 ARG A 115 ? GLY A 136 ? ARG A 114 GLY A 135 1 ? 22 HELX_P HELX_P9 9 ASP A 140 ? HIS A 151 ? ASP A 139 HIS A 150 1 ? 12 HELX_P HELX_P10 10 HIS A 151 ? TYR A 171 ? HIS A 150 TYR A 170 1 ? 21 HELX_P HELX_P11 11 PRO A 174 ? ASN A 188 ? PRO A 173 ASN A 187 1 ? 15 HELX_P HELX_P12 12 ASP A 189 ? VAL A 191 ? ASP A 188 VAL A 190 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A ASN 3 N ? ? A MSE 1 A ASN 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A LYS 48 C ? ? ? 1_555 A MSE 49 N ? ? A LYS 47 A MSE 48 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MSE 49 C ? ? ? 1_555 A ARG 50 N ? ? A MSE 48 A ARG 49 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A ASP 58 C ? ? ? 1_555 A MSE 59 N ? ? A ASP 57 A MSE 58 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? A MSE 59 C ? ? ? 1_555 A LEU 60 N ? ? A MSE 58 A LEU 59 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale7 covale both ? A VAL 127 C ? ? ? 1_555 A MSE 128 N ? ? A VAL 126 A MSE 127 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale8 covale both ? A MSE 128 C ? ? ? 1_555 A ASP 129 N ? ? A MSE 127 A ASP 128 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale9 covale both ? A GLU 132 C ? ? ? 1_555 A MSE 133 N ? ? A GLU 131 A MSE 132 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale10 covale both ? A MSE 133 C ? ? ? 1_555 A SER 134 N ? ? A MSE 132 A SER 133 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale11 covale both ? A GLY 138 C ? ? ? 1_555 A MSE 139 N ? ? A GLY 137 A MSE 138 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale12 covale both ? A MSE 139 C ? ? ? 1_555 A ASP 140 N ? ? A MSE 138 A ASP 139 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale13 covale both ? A VAL 165 C ? ? ? 1_555 A MSE 166 N ? ? A VAL 164 A MSE 165 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale14 covale both ? A MSE 166 C ? ? ? 1_555 A ALA 167 N ? ? A MSE 165 A ALA 166 1_555 ? ? ? ? ? ? ? 1.319 ? ? metalc1 metalc ? ? A GLU 19 OE1 ? ? ? 1_555 C NA . NA ? ? A GLU 18 A NA 201 1_555 ? ? ? ? ? ? ? 2.311 ? ? metalc2 metalc ? ? A ASN 107 OD1 ? ? ? 1_555 C NA . NA ? ? A ASN 106 A NA 201 1_555 ? ? ? ? ? ? ? 2.413 ? ? metalc3 metalc ? ? A PRO 111 O ? ? ? 1_555 C NA . NA ? ? A PRO 110 A NA 201 1_555 ? ? ? ? ? ? ? 2.290 ? ? metalc4 metalc ? ? A LYS 113 O ? ? ? 1_555 C NA . NA ? ? A LYS 112 A NA 201 1_555 ? ? ? ? ? ? ? 2.216 ? ? metalc5 metalc ? ? C NA . NA ? ? ? 1_555 D HOH . O ? ? A NA 201 A HOH 304 1_555 ? ? ? ? ? ? ? 2.699 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 173 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 172 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 174 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 173 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.43 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CIT 200 ? 8 'BINDING SITE FOR RESIDUE CIT A 200' AC2 Software A NA 201 ? 5 'BINDING SITE FOR RESIDUE NA A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 TRP A 17 ? TRP A 16 . ? 1_555 ? 2 AC1 8 ARG A 18 ? ARG A 17 . ? 1_555 ? 3 AC1 8 TYR A 171 ? TYR A 170 . ? 1_555 ? 4 AC1 8 THR A 173 ? THR A 172 . ? 1_555 ? 5 AC1 8 LYS A 175 ? LYS A 174 . ? 4_565 ? 6 AC1 8 HOH D . ? HOH A 214 . ? 1_555 ? 7 AC1 8 HOH D . ? HOH A 239 . ? 4_565 ? 8 AC1 8 HOH D . ? HOH A 299 . ? 1_555 ? 9 AC2 5 GLU A 19 ? GLU A 18 . ? 1_555 ? 10 AC2 5 ASN A 107 ? ASN A 106 . ? 1_555 ? 11 AC2 5 PRO A 111 ? PRO A 110 . ? 1_555 ? 12 AC2 5 LYS A 113 ? LYS A 112 . ? 1_555 ? 13 AC2 5 HOH D . ? HOH A 304 . ? 1_555 ? # _atom_sites.entry_id 3F7C _atom_sites.fract_transf_matrix[1][1] 0.012987 _atom_sites.fract_transf_matrix[1][2] 0.007498 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014996 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010958 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N NA O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 ASN 3 2 2 ASN ASN A . n A 1 4 ALA 4 3 3 ALA ALA A . n A 1 5 ASN 5 4 4 ASN ASN A . n A 1 6 GLN 6 5 5 GLN GLN A . n A 1 7 PHE 7 6 6 PHE PHE A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 VAL 11 10 10 VAL VAL A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 GLN 13 12 12 GLN GLN A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 GLN 15 14 14 GLN GLN A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 TRP 17 16 16 TRP TRP A . n A 1 18 ARG 18 17 17 ARG ARG A . n A 1 19 GLU 19 18 18 GLU GLU A . n A 1 20 CYS 20 19 19 CYS CYS A . n A 1 21 ALA 21 20 20 ALA ALA A . n A 1 22 PHE 22 21 21 PHE PHE A . n A 1 23 LEU 23 22 22 LEU LEU A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ALA 25 24 24 ALA ALA A . n A 1 26 LEU 26 25 25 LEU LEU A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 GLU 28 27 27 GLU GLU A . n A 1 29 ARG 29 28 28 ARG ARG A . n A 1 30 SER 30 29 29 SER SER A . n A 1 31 PHE 31 30 30 PHE PHE A . n A 1 32 PRO 32 31 31 PRO PRO A . n A 1 33 ASN 33 32 32 ASN ASN A . n A 1 34 TYR 34 33 33 TYR TYR A . n A 1 35 ALA 35 34 34 ALA ALA A . n A 1 36 LEU 36 35 35 LEU LEU A . n A 1 37 PHE 37 36 36 PHE PHE A . n A 1 38 ALA 38 37 37 ALA ALA A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 VAL 41 40 40 VAL VAL A . n A 1 42 GLY 42 41 41 GLY GLY A . n A 1 43 LEU 43 42 42 LEU LEU A . n A 1 44 LYS 44 43 43 LYS LYS A . n A 1 45 THR 45 44 44 THR THR A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 GLY 47 46 46 GLY GLY A . n A 1 48 LYS 48 47 47 LYS LYS A . n A 1 49 MSE 49 48 48 MSE MSE A . n A 1 50 ARG 50 49 49 ARG ARG A . n A 1 51 GLN 51 50 50 GLN GLN A . n A 1 52 LEU 52 51 51 LEU LEU A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 ASP 54 53 53 ASP ASP A . n A 1 55 LEU 55 54 54 LEU LEU A . n A 1 56 ALA 56 55 55 ALA ALA A . n A 1 57 TRP 57 56 56 TRP TRP A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 MSE 59 58 58 MSE MSE A . n A 1 60 LEU 60 59 59 LEU LEU A . n A 1 61 GLN 61 60 60 GLN GLN A . n A 1 62 LYS 62 61 61 LYS LYS A . n A 1 63 ASP 63 62 62 ASP ASP A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 ALA 65 64 64 ALA ALA A . n A 1 66 ASP 66 65 65 ASP ASP A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 ALA 68 67 67 ALA ALA A . n A 1 69 ILE 69 68 68 ILE ILE A . n A 1 70 PRO 70 69 69 PRO PRO A . n A 1 71 GLN 71 70 70 GLN GLN A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 LEU 73 72 72 LEU LEU A . n A 1 74 SER 74 73 73 SER SER A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 THR 78 77 77 THR THR A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 CYS 80 79 79 CYS CYS A . n A 1 81 PRO 81 80 80 PRO PRO A . n A 1 82 ASN 82 81 81 ASN ASN A . n A 1 83 VAL 83 82 82 VAL VAL A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 GLU 85 84 84 GLU GLU A . n A 1 86 TYR 86 85 85 TYR TYR A . n A 1 87 ASP 87 86 86 ASP ASP A . n A 1 88 ALA 88 87 87 ALA ALA A . n A 1 89 TYR 89 88 88 TYR TYR A . n A 1 90 GLY 90 89 89 GLY GLY A . n A 1 91 VAL 91 90 90 VAL VAL A . n A 1 92 TYR 92 91 91 TYR TYR A . n A 1 93 PRO 93 92 92 PRO PRO A . n A 1 94 ALA 94 93 93 ALA ALA A . n A 1 95 PHE 95 94 94 PHE PHE A . n A 1 96 ASP 96 95 95 ASP ASP A . n A 1 97 PHE 97 96 96 PHE PHE A . n A 1 98 CYS 98 97 97 CYS CYS A . n A 1 99 GLN 99 98 98 GLN GLN A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 GLU 102 101 101 GLU GLU A . n A 1 103 GLN 103 102 102 GLN GLN A . n A 1 104 ALA 104 103 103 ALA ALA A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 LEU 106 105 105 LEU LEU A . n A 1 107 ASN 107 106 106 ASN ASN A . n A 1 108 ARG 108 107 107 ARG ARG A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 ASN 110 109 109 ASN ASN A . n A 1 111 PRO 111 110 110 PRO PRO A . n A 1 112 ASN 112 111 111 ASN ASN A . n A 1 113 LYS 113 112 112 LYS LYS A . n A 1 114 HIS 114 113 113 HIS HIS A . n A 1 115 ARG 115 114 114 ARG ARG A . n A 1 116 ALA 116 115 115 ALA ALA A . n A 1 117 THR 117 116 116 THR THR A . n A 1 118 GLU 118 117 117 GLU GLU A . n A 1 119 ALA 119 118 118 ALA ALA A . n A 1 120 SER 120 119 119 SER SER A . n A 1 121 GLN 121 120 120 GLN GLN A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 ALA 123 122 122 ALA ALA A . n A 1 124 THR 124 123 123 THR THR A . n A 1 125 ARG 125 124 124 ARG ARG A . n A 1 126 THR 126 125 125 THR THR A . n A 1 127 VAL 127 126 126 VAL VAL A . n A 1 128 MSE 128 127 127 MSE MSE A . n A 1 129 ASP 129 128 128 ASP ASP A . n A 1 130 PHE 130 129 129 PHE PHE A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 GLU 132 131 131 GLU GLU A . n A 1 133 MSE 133 132 132 MSE MSE A . n A 1 134 SER 134 133 133 SER SER A . n A 1 135 GLU 135 134 134 GLU GLU A . n A 1 136 GLY 136 135 135 GLY GLY A . n A 1 137 GLU 137 136 136 GLU GLU A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 MSE 139 138 138 MSE MSE A . n A 1 140 ASP 140 139 139 ASP ASP A . n A 1 141 GLU 141 140 140 GLU GLU A . n A 1 142 ASN 142 141 141 ASN ASN A . n A 1 143 GLU 143 142 142 GLU GLU A . n A 1 144 LEU 144 143 143 LEU LEU A . n A 1 145 VAL 145 144 144 VAL VAL A . n A 1 146 ARG 146 145 145 ARG ARG A . n A 1 147 VAL 147 146 146 VAL VAL A . n A 1 148 PHE 148 147 147 PHE PHE A . n A 1 149 GLU 149 148 148 GLU GLU A . n A 1 150 HIS 150 149 149 HIS HIS A . n A 1 151 HIS 151 150 150 HIS HIS A . n A 1 152 PRO 152 151 151 PRO PRO A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 LEU 154 153 153 LEU LEU A . n A 1 155 LYS 155 154 154 LYS LYS A . n A 1 156 ASP 156 155 155 ASP ASP A . n A 1 157 ASP 157 156 156 ASP ASP A . n A 1 158 LYS 158 157 157 LYS LYS A . n A 1 159 LEU 159 158 158 LEU LEU A . n A 1 160 PHE 160 159 159 PHE PHE A . n A 1 161 GLN 161 160 160 GLN GLN A . n A 1 162 ARG 162 161 161 ARG ARG A . n A 1 163 ASP 163 162 162 ASP ASP A . n A 1 164 THR 164 163 163 THR THR A . n A 1 165 VAL 165 164 164 VAL VAL A . n A 1 166 MSE 166 165 165 MSE MSE A . n A 1 167 ALA 167 166 166 ALA ALA A . n A 1 168 LEU 168 167 167 LEU LEU A . n A 1 169 TYR 169 168 168 TYR TYR A . n A 1 170 TYR 170 169 169 TYR TYR A . n A 1 171 TYR 171 170 170 TYR TYR A . n A 1 172 ARG 172 171 171 ARG ARG A . n A 1 173 THR 173 172 172 THR THR A . n A 1 174 PRO 174 173 173 PRO PRO A . n A 1 175 LYS 175 174 174 LYS LYS A . n A 1 176 GLU 176 175 175 GLU GLU A . n A 1 177 ALA 177 176 176 ALA ALA A . n A 1 178 PHE 178 177 177 PHE PHE A . n A 1 179 LEU 179 178 178 LEU LEU A . n A 1 180 ALA 180 179 179 ALA ALA A . n A 1 181 GLU 181 180 180 GLU GLU A . n A 1 182 LEU 182 181 181 LEU LEU A . n A 1 183 ARG 183 182 182 ARG ARG A . n A 1 184 ALA 184 183 183 ALA ALA A . n A 1 185 GLY 185 184 184 GLY GLY A . n A 1 186 ALA 186 185 185 ALA ALA A . n A 1 187 ALA 187 186 186 ALA ALA A . n A 1 188 ASN 188 187 187 ASN ASN A . n A 1 189 ASP 189 188 188 ASP ASP A . n A 1 190 GLY 190 189 189 GLY GLY A . n A 1 191 VAL 191 190 190 VAL VAL A . n A 1 192 SER 192 191 191 SER SER A . n A 1 193 ASN 193 192 192 ASN ASN A . n A 1 194 LEU 194 193 193 LEU LEU A . n A 1 195 GLY 195 194 194 GLY GLY A . n A 1 196 ILE 196 195 195 ILE ILE A . n A 1 197 SER 197 196 196 SER SER A . n A 1 198 LEU 198 197 197 LEU LEU A . n A 1 199 GLU 199 198 198 GLU GLU A . n A 1 200 GLY 200 199 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT 1 200 1 CIT CIT A . C 3 NA 1 201 2 NA NA A . D 4 HOH 1 202 3 HOH HOH A . D 4 HOH 2 203 4 HOH HOH A . D 4 HOH 3 204 5 HOH HOH A . D 4 HOH 4 205 6 HOH HOH A . D 4 HOH 5 206 7 HOH HOH A . D 4 HOH 6 207 8 HOH HOH A . D 4 HOH 7 208 9 HOH HOH A . D 4 HOH 8 209 10 HOH HOH A . D 4 HOH 9 210 11 HOH HOH A . D 4 HOH 10 211 12 HOH HOH A . D 4 HOH 11 212 13 HOH HOH A . D 4 HOH 12 213 14 HOH HOH A . D 4 HOH 13 214 15 HOH HOH A . D 4 HOH 14 215 16 HOH HOH A . D 4 HOH 15 216 17 HOH HOH A . D 4 HOH 16 217 18 HOH HOH A . D 4 HOH 17 218 19 HOH HOH A . D 4 HOH 18 219 20 HOH HOH A . D 4 HOH 19 220 21 HOH HOH A . D 4 HOH 20 221 22 HOH HOH A . D 4 HOH 21 222 23 HOH HOH A . D 4 HOH 22 223 24 HOH HOH A . D 4 HOH 23 224 25 HOH HOH A . D 4 HOH 24 225 26 HOH HOH A . D 4 HOH 25 226 27 HOH HOH A . D 4 HOH 26 227 28 HOH HOH A . D 4 HOH 27 228 29 HOH HOH A . D 4 HOH 28 229 30 HOH HOH A . D 4 HOH 29 230 31 HOH HOH A . D 4 HOH 30 231 32 HOH HOH A . D 4 HOH 31 232 33 HOH HOH A . D 4 HOH 32 233 34 HOH HOH A . D 4 HOH 33 234 35 HOH HOH A . D 4 HOH 34 235 36 HOH HOH A . D 4 HOH 35 236 37 HOH HOH A . D 4 HOH 36 237 38 HOH HOH A . D 4 HOH 37 238 39 HOH HOH A . D 4 HOH 38 239 40 HOH HOH A . D 4 HOH 39 240 41 HOH HOH A . D 4 HOH 40 241 42 HOH HOH A . D 4 HOH 41 242 43 HOH HOH A . D 4 HOH 42 243 44 HOH HOH A . D 4 HOH 43 244 45 HOH HOH A . D 4 HOH 44 245 46 HOH HOH A . D 4 HOH 45 246 47 HOH HOH A . D 4 HOH 46 247 48 HOH HOH A . D 4 HOH 47 248 49 HOH HOH A . D 4 HOH 48 249 50 HOH HOH A . D 4 HOH 49 250 51 HOH HOH A . D 4 HOH 50 251 52 HOH HOH A . D 4 HOH 51 252 53 HOH HOH A . D 4 HOH 52 253 54 HOH HOH A . D 4 HOH 53 254 55 HOH HOH A . D 4 HOH 54 255 56 HOH HOH A . D 4 HOH 55 256 57 HOH HOH A . D 4 HOH 56 257 58 HOH HOH A . D 4 HOH 57 258 59 HOH HOH A . D 4 HOH 58 259 60 HOH HOH A . D 4 HOH 59 260 61 HOH HOH A . D 4 HOH 60 261 62 HOH HOH A . D 4 HOH 61 262 63 HOH HOH A . D 4 HOH 62 263 64 HOH HOH A . D 4 HOH 63 264 65 HOH HOH A . D 4 HOH 64 265 66 HOH HOH A . D 4 HOH 65 266 67 HOH HOH A . D 4 HOH 66 267 68 HOH HOH A . D 4 HOH 67 268 69 HOH HOH A . D 4 HOH 68 269 70 HOH HOH A . D 4 HOH 69 270 71 HOH HOH A . D 4 HOH 70 271 72 HOH HOH A . D 4 HOH 71 272 73 HOH HOH A . D 4 HOH 72 273 74 HOH HOH A . D 4 HOH 73 274 75 HOH HOH A . D 4 HOH 74 275 76 HOH HOH A . D 4 HOH 75 276 77 HOH HOH A . D 4 HOH 76 277 78 HOH HOH A . D 4 HOH 77 278 79 HOH HOH A . D 4 HOH 78 279 80 HOH HOH A . D 4 HOH 79 280 81 HOH HOH A . D 4 HOH 80 281 82 HOH HOH A . D 4 HOH 81 282 83 HOH HOH A . D 4 HOH 82 283 84 HOH HOH A . D 4 HOH 83 284 85 HOH HOH A . D 4 HOH 84 285 86 HOH HOH A . D 4 HOH 85 286 87 HOH HOH A . D 4 HOH 86 287 88 HOH HOH A . D 4 HOH 87 288 89 HOH HOH A . D 4 HOH 88 289 90 HOH HOH A . D 4 HOH 89 290 91 HOH HOH A . D 4 HOH 90 291 92 HOH HOH A . D 4 HOH 91 292 93 HOH HOH A . D 4 HOH 92 293 94 HOH HOH A . D 4 HOH 93 294 95 HOH HOH A . D 4 HOH 94 295 96 HOH HOH A . D 4 HOH 95 296 97 HOH HOH A . D 4 HOH 96 297 98 HOH HOH A . D 4 HOH 97 298 99 HOH HOH A . D 4 HOH 98 299 100 HOH HOH A . D 4 HOH 99 300 101 HOH HOH A . D 4 HOH 100 301 102 HOH HOH A . D 4 HOH 101 302 103 HOH HOH A . D 4 HOH 102 303 104 HOH HOH A . D 4 HOH 103 304 105 HOH HOH A . D 4 HOH 104 305 106 HOH HOH A . D 4 HOH 105 306 107 HOH HOH A . D 4 HOH 106 307 108 HOH HOH A . D 4 HOH 107 308 109 HOH HOH A . D 4 HOH 108 309 110 HOH HOH A . D 4 HOH 109 310 111 HOH HOH A . D 4 HOH 110 311 112 HOH HOH A . D 4 HOH 111 312 113 HOH HOH A . D 4 HOH 112 313 114 HOH HOH A . D 4 HOH 113 314 115 HOH HOH A . D 4 HOH 114 315 116 HOH HOH A . D 4 HOH 115 316 117 HOH HOH A . D 4 HOH 116 317 118 HOH HOH A . D 4 HOH 117 318 119 HOH HOH A . D 4 HOH 118 319 120 HOH HOH A . D 4 HOH 119 320 121 HOH HOH A . D 4 HOH 120 321 122 HOH HOH A . D 4 HOH 121 322 123 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 49 A MSE 48 ? MET SELENOMETHIONINE 3 A MSE 59 A MSE 58 ? MET SELENOMETHIONINE 4 A MSE 128 A MSE 127 ? MET SELENOMETHIONINE 5 A MSE 133 A MSE 132 ? MET SELENOMETHIONINE 6 A MSE 139 A MSE 138 ? MET SELENOMETHIONINE 7 A MSE 166 A MSE 165 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6330 ? 1 MORE -56 ? 1 'SSA (A^2)' 19300 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 -38.4990000000 0.0000000000 -1.0000000000 0.0000000000 66.6822240406 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 19 ? A GLU 18 ? 1_555 NA ? C NA . ? A NA 201 ? 1_555 OD1 ? A ASN 107 ? A ASN 106 ? 1_555 92.1 ? 2 OE1 ? A GLU 19 ? A GLU 18 ? 1_555 NA ? C NA . ? A NA 201 ? 1_555 O ? A PRO 111 ? A PRO 110 ? 1_555 123.1 ? 3 OD1 ? A ASN 107 ? A ASN 106 ? 1_555 NA ? C NA . ? A NA 201 ? 1_555 O ? A PRO 111 ? A PRO 110 ? 1_555 97.3 ? 4 OE1 ? A GLU 19 ? A GLU 18 ? 1_555 NA ? C NA . ? A NA 201 ? 1_555 O ? A LYS 113 ? A LYS 112 ? 1_555 123.9 ? 5 OD1 ? A ASN 107 ? A ASN 106 ? 1_555 NA ? C NA . ? A NA 201 ? 1_555 O ? A LYS 113 ? A LYS 112 ? 1_555 109.0 ? 6 O ? A PRO 111 ? A PRO 110 ? 1_555 NA ? C NA . ? A NA 201 ? 1_555 O ? A LYS 113 ? A LYS 112 ? 1_555 105.5 ? 7 OE1 ? A GLU 19 ? A GLU 18 ? 1_555 NA ? C NA . ? A NA 201 ? 1_555 O ? D HOH . ? A HOH 304 ? 1_555 81.1 ? 8 OD1 ? A ASN 107 ? A ASN 106 ? 1_555 NA ? C NA . ? A NA 201 ? 1_555 O ? D HOH . ? A HOH 304 ? 1_555 163.5 ? 9 O ? A PRO 111 ? A PRO 110 ? 1_555 NA ? C NA . ? A NA 201 ? 1_555 O ? D HOH . ? A HOH 304 ? 1_555 74.5 ? 10 O ? A LYS 113 ? A LYS 112 ? 1_555 NA ? C NA . ? A NA 201 ? 1_555 O ? D HOH . ? A HOH 304 ? 1_555 87.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-11-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-10-25 4 'Structure model' 1 3 2019-07-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -4.9493 _pdbx_refine_tls.origin_y 33.5066 _pdbx_refine_tls.origin_z 25.0593 _pdbx_refine_tls.T[1][1] 0.0315 _pdbx_refine_tls.T[2][2] 0.0534 _pdbx_refine_tls.T[3][3] 0.0493 _pdbx_refine_tls.T[1][2] 0.0158 _pdbx_refine_tls.T[1][3] 0.0114 _pdbx_refine_tls.T[2][3] -0.0060 _pdbx_refine_tls.L[1][1] 1.0894 _pdbx_refine_tls.L[2][2] 0.2610 _pdbx_refine_tls.L[3][3] 0.7170 _pdbx_refine_tls.L[1][2] 0.2092 _pdbx_refine_tls.L[1][3] 0.4322 _pdbx_refine_tls.L[2][3] 0.0495 _pdbx_refine_tls.S[1][1] -0.0385 _pdbx_refine_tls.S[2][2] 0.0329 _pdbx_refine_tls.S[3][3] 0.0057 _pdbx_refine_tls.S[1][2] -0.0618 _pdbx_refine_tls.S[1][3] -0.0086 _pdbx_refine_tls.S[2][3] -0.0439 _pdbx_refine_tls.S[2][1] -0.0495 _pdbx_refine_tls.S[3][1] 0.0856 _pdbx_refine_tls.S[3][2] 0.1136 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 198 _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 # _pdbx_entry_details.entry_id 3F7C _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CONSTRUCT WAS ENGINEERED WITH THREE MUTATIONS K168Y, K169Y AND Q170Y. THE SITES OF MUTATIONS WERE SELECTED FROM HIGH ENTROPY SITES PREDICTED BY THE UCLA SURFACE ENTROPY REDUCTION SERVER. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 76 ? CD ? A GLU 77 CD 2 1 Y 1 A GLU 76 ? OE1 ? A GLU 77 OE1 3 1 Y 1 A GLU 76 ? OE2 ? A GLU 77 OE2 4 1 Y 1 A GLU 198 ? CG ? A GLU 199 CG 5 1 Y 1 A GLU 198 ? CD ? A GLU 199 CD 6 1 Y 1 A GLU 198 ? OE1 ? A GLU 199 OE1 7 1 Y 1 A GLU 198 ? OE2 ? A GLU 199 OE2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 199 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 200 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CITRIC ACID' CIT 3 'SODIUM ION' NA 4 water HOH #