HEADER OXIDOREDUCTASE 09-NOV-08 3F7L TITLE X-RAY CRYSTAL STRUCTURE OF ALVINELLA POMPEJANA CU,ZN SUPEROXIDE TITLE 2 DISMUTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER,ZINC SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALVINELLA POMPEJANA; SOURCE 3 ORGANISM_TAXID: 6376; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE (SUPEROXIDE ACCEPTOR), SUPEROXIDE DISMUTASE, GREEK KEY KEYWDS 2 BETA-BARREL, AMYLOID FILAMENTS, ALS, FALS, LOU GEHRIG'S DISEASE, KEYWDS 3 AMYOTROPHIC LATERAL SCLEROSIS, ALVINELLA POMPEJANA, POMPEII WORM, KEYWDS 4 EUKARYOTIC THERMOPHILE, THERMOSTABLE PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.S.SHIN,M.DIDONATO,D.P.BARONDEAU,E.D.GETZOFF,J.A.TAINER REVDAT 2 06-SEP-23 3F7L 1 REMARK REVDAT 1 10-FEB-09 3F7L 0 JRNL AUTH D.S.SHIN,M.DIDONATO,D.P.BARONDEAU,G.L.HURA,C.HITOMI, JRNL AUTH 2 J.A.BERGLUND,E.D.GETZOFF,S.C.CARY,J.A.TAINER JRNL TITL SUPEROXIDE DISMUTASE FROM THE EUKARYOTIC THERMOPHILE JRNL TITL 2 ALVINELLA POMPEJANA: STRUCTURES, STABILITY, MECHANISM, AND JRNL TITL 3 INSIGHTS INTO AMYOTROPHIC LATERAL SCLEROSIS. JRNL REF J.MOL.BIOL. V. 385 1534 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19063897 JRNL DOI 10.1016/J.JMB.2008.11.031 REMARK 2 REMARK 2 RESOLUTION. 0.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.130 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.112 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.138 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.011 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 4911 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 97995 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.124 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.106 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.131 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.006 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 4327 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 86435 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1091 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1454.9 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1057.7 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 10 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 13842 REMARK 3 NUMBER OF RESTRAINTS : 16320 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.033 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.096 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.010 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.094 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.006 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.046 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.101 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3F7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : SIBYLS KOHZU DUAL DOUBLE SI(111) REMARK 200 CRYSTAL MONOCHROMATOR (DDCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98085 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 15.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 54.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29100 REMARK 200 FOR SHELL : 2.503 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1PU0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 55% SATURATED AMMONIUM SULFATE, 100 MM REMARK 280 NA CITRATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.39700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.79400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.59550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 135.99250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.19850 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.39700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 108.79400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 135.99250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.59550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.19850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND SUBUNIT OF THE DIMER IS GENERATED BY THE REMARK 300 OPERATORS Y-X,Y,1/2-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 62.49300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 81.59550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 211 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 90 NA NA A 204 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 25 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 126 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 59.44 -143.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU1 A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 44 ND1 REMARK 620 2 HIS A 46 NE2 137.5 REMARK 620 3 HIS A 118 NE2 102.0 120.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 ND1 REMARK 620 2 HIS A 69 ND1 105.5 REMARK 620 3 HIS A 78 ND1 110.9 120.8 REMARK 620 4 ASP A 81 OD1 106.4 99.2 112.8 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 212 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F7K RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF AN ALVINELLA POMPEJANA CU,ZN SUPEROXIDE REMARK 900 DISMUTASE - HYDROGEN PEROXIDE COMPLEX DBREF 3F7L A 1 152 PDB 3F7L 3F7L 1 152 SEQRES 1 A 152 ALA ILE HIS ALA VAL CYS VAL LEU LYS GLY ASP SER PRO SEQRES 2 A 152 VAL THR GLY THR ILE HIS LEU LYS GLU GLU GLY ASP MET SEQRES 3 A 152 VAL THR VAL THR GLY GLU ILE THR GLY LEU THR PRO GLY SEQRES 4 A 152 LYS HIS GLY PHE HIS VAL HIS GLU PHE GLY ASP ASN THR SEQRES 5 A 152 ASN GLY CYS THR SER ALA GLY GLY HIS PHE ASN PRO HIS SEQRES 6 A 152 GLY LYS GLU HIS GLY ALA PRO GLU ASP GLU ASN ARG HIS SEQRES 7 A 152 ALA GLY ASP LEU GLY ASN VAL VAL ALA GLY GLU ASP GLY SEQRES 8 A 152 LYS ALA VAL ILE ASN MET LYS ASP LYS LEU VAL LYS LEU SEQRES 9 A 152 THR GLY PRO ASP SER VAL ILE GLY ARG THR LEU VAL VAL SEQRES 10 A 152 HIS VAL ASP GLU ASP ASP LEU GLY ARG GLY GLY HIS GLU SEQRES 11 A 152 GLN SER LYS ILE THR GLY ASN ALA GLY GLY ARG LEU ALA SEQRES 12 A 152 CYS GLY VAL ILE GLY ILE THR LYS GLU HET CU1 A 201 1 HET CU A 202 1 HET ZN A 203 1 HET NA A 204 1 HET ACY A 205 8 HET ACY A 206 4 HET SO4 A 207 5 HET SO4 A 208 5 HET SO4 A 209 5 HET SO4 A 210 5 HET SO4 A 211 5 HET SO4 A 212 5 HETNAM CU1 COPPER (I) ION HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM ACY ACETIC ACID HETNAM SO4 SULFATE ION FORMUL 2 CU1 CU 1+ FORMUL 3 CU CU 2+ FORMUL 4 ZN ZN 2+ FORMUL 5 NA NA 1+ FORMUL 6 ACY 2(C2 H4 O2) FORMUL 8 SO4 6(O4 S 2-) FORMUL 14 HOH *354(H2 O) HELIX 1 1 CYS A 55 ALA A 58 5 4 HELIX 2 2 GLN A 131 THR A 135 1 5 SHEET 1 A 8 ASP A 81 ALA A 87 0 SHEET 2 A 8 GLY A 39 HIS A 46 -1 N GLY A 39 O ALA A 87 SHEET 3 A 8 THR A 114 HIS A 118 -1 O THR A 114 N HIS A 46 SHEET 4 A 8 ARG A 141 ILE A 149 -1 N LEU A 142 O VAL A 117 SHEET 5 A 8 HIS A 3 LYS A 9 -1 N VAL A 5 O GLY A 148 SHEET 6 A 8 THR A 15 GLU A 23 -1 O GLY A 16 N LEU A 8 SHEET 7 A 8 MET A 26 THR A 34 -1 O MET A 26 N GLU A 23 SHEET 8 A 8 LYS A 92 ASP A 99 0 SSBOND 1 CYS A 55 CYS A 144 1555 1555 2.25 LINK ND1 HIS A 44 CU ACU1 A 201 1555 1555 1.99 LINK NE2 HIS A 46 CU ACU1 A 201 1555 1555 1.93 LINK ND1 HIS A 61 ZN ZN A 203 1555 1555 1.99 LINK ND1 HIS A 69 ZN ZN A 203 1555 1555 2.02 LINK ND1 HIS A 78 ZN ZN A 203 1555 1555 2.01 LINK OD1 ASP A 81 ZN ZN A 203 1555 1555 1.96 LINK NE2 HIS A 118 CU ACU1 A 201 1555 1555 1.97 SITE 1 AC1 5 HIS A 44 HIS A 46 HIS A 61 HIS A 118 SITE 2 AC1 5 CU A 202 SITE 1 AC2 7 HIS A 44 HIS A 46 HIS A 61 HIS A 118 SITE 2 AC2 7 CU1 A 201 HOH A 300 HOH A 301 SITE 1 AC3 4 HIS A 61 HIS A 69 HIS A 78 ASP A 81 SITE 1 AC4 6 GLY A 88 GLU A 89 ASP A 90 LYS A 92 SITE 2 AC4 6 HOH A 306 HOH A 397 SITE 1 AC5 6 GLU A 73 LEU A 124 ARG A 126 HOH A 337 SITE 2 AC5 6 HOH A 446 HOH A 482 SITE 1 AC6 8 GLU A 89 ARG A 141 HOH A 304 HOH A 307 SITE 2 AC6 8 HOH A 338 HOH A 396 HOH A 412 HOH A 436 SITE 1 AC7 8 ASN A 53 CYS A 55 THR A 56 HOH A 336 SITE 2 AC7 8 HOH A 356 HOH A 369 HOH A 395 HOH A 577 SITE 1 AC8 8 ASP A 74 GLU A 75 ASN A 76 HOH A 348 SITE 2 AC8 8 HOH A 558 HOH A 593 HOH A 594 HOH A 638 SITE 1 AC9 8 GLU A 47 ARG A 113 HOH A 437 HOH A 552 SITE 2 AC9 8 HOH A 587 HOH A 617 HOH A 618 HOH A 622 SITE 1 BC1 5 ASN A 76 ASN A 96 HOH A 348 HOH A 558 SITE 2 BC1 5 HOH A 593 SITE 1 BC2 4 HIS A 129 GLU A 130 SO4 A 212 HOH A 619 SITE 1 BC3 7 HIS A 129 GLU A 130 GLN A 131 SO4 A 211 SITE 2 BC3 7 HOH A 330 HOH A 452 HOH A 619 CRYST1 62.493 62.493 163.191 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016002 0.009239 0.000000 0.00000 SCALE2 0.000000 0.018477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006128 0.00000