HEADER TRANSFERASE 10-NOV-08 3F7W TITLE CRYSTAL STRUCTURE OF PUTATIVE FRUCTOSAMINE-3-KINASE (YP_290396.1) FROM TITLE 2 THERMOBIFIDA FUSCA YX-ER1 AT 1.85 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE FRUCTOSAMINE-3-KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBIFIDA FUSCA YX; SOURCE 3 ORGANISM_TAXID: 269800; SOURCE 4 GENE: TFU_2340, YP_290396.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: SPEEDET; SOURCE 9 OTHER_DETAILS: GENOMIC DNA FROM THE PROTEASE DEFICIENT ER-1 STRAIN SOURCE 10 DERIVED FORM THERMOBIFIDA FUSCA YX WAS A GIFT FROM DAVID WILSON. KEYWDS YP_290396.1, PUTATIVE FRUCTOSAMINE-3-KINASE, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, UNKNOWN FUNCTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3F7W 1 REMARK SEQADV REVDAT 5 24-JUL-19 3F7W 1 REMARK LINK REVDAT 4 25-OCT-17 3F7W 1 REMARK REVDAT 3 13-JUL-11 3F7W 1 VERSN REVDAT 2 24-FEB-09 3F7W 1 VERSN REVDAT 1 25-NOV-08 3F7W 0 SPRSDE 25-NOV-08 3F7W 3D1U JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE FRUCTOSAMINE-3-KINASE JRNL TITL 2 (YP_290396.1) FROM THERMOBIFIDA FUSCA YX-ER1 AT 1.85 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1522 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2102 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2230 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -1.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.725 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2485 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1699 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3404 ; 1.411 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4077 ; 0.957 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 6.490 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;31.254 ;22.258 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 353 ;12.337 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.529 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2908 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 553 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 507 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1817 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1191 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1273 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 222 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.200 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1592 ; 1.830 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 614 ; 0.447 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2470 ; 2.572 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1038 ; 4.246 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 934 ; 5.706 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): 61.3176 11.2604 7.7484 REMARK 3 T TENSOR REMARK 3 T11: -0.1022 T22: -0.0427 REMARK 3 T33: -0.0664 T12: -0.0007 REMARK 3 T13: -0.0033 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.7345 L22: 1.1581 REMARK 3 L33: 1.4430 L12: 0.0587 REMARK 3 L13: 0.0177 L23: -0.0911 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.1168 S13: 0.0150 REMARK 3 S21: -0.0857 S22: 0.0043 S23: 0.0048 REMARK 3 S31: 0.0743 S32: 0.0590 S33: -0.0016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. CL IONS REMARK 3 AND PEG6000 FRAGMENT (PEG) FROM CRYSTALLIZATION AND ETHYLENE REMARK 3 GLYCOL (EDO) FROM CRYO SOLUTION WERE MODELED. 5. THERE IS REMARK 3 UNIDENTIFIED DENSITY FOUND NEAR ATP BINDING SITE. IT WAS MODELED REMARK 3 AS AN UNKNOWN LIGAND (UNL). REMARK 4 REMARK 4 3F7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918381,0.979224,0.978618 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : 1M LONG RH COATED BENT REMARK 200 CYLINDRICAL MIRROR FORHORIZONTAL REMARK 200 AND VERTICAL FOCUSSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30125 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 28.916 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 7.3250 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.68300 REMARK 200 R SYM FOR SHELL (I) : 0.68300 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0000M LICL, 10.0000% PEG-6000, 0.1M REMARK 280 BICINE PH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.02450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.58900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.58900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.53675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.58900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.58900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.51225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.58900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.58900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.53675 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.58900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.58900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.51225 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.02450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY REMARK 300 AND CRYSTAL PACKING ANALYSIS SUPPORT THE ASSIGNMENT OF A MONOMER AS REMARK 300 A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 1 CG1 CG2 REMARK 470 HIS A 24 ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 331 O HOH A 599 8665 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 1 100.60 169.19 REMARK 500 HIS A 26 -110.89 48.22 REMARK 500 HIS A 26 -114.58 48.22 REMARK 500 ASP A 49 -8.66 78.58 REMARK 500 ASP A 54 108.63 -52.55 REMARK 500 ASP A 193 50.15 -148.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 296 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 296 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 387095 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3F7W A 2 287 UNP Q47ME9 Q47ME9_THEFY 2 287 SEQADV 3F7W GLY A 0 UNP Q47ME9 EXPRESSION TAG SEQADV 3F7W VAL A 1 UNP Q47ME9 EXPRESSION TAG SEQRES 1 A 288 GLY VAL ASN SER VAL ALA ALA ARG VAL THR GLU LEU THR SEQRES 2 A 288 GLY ARG GLU VAL ALA ALA VAL ALA GLU ARG GLY HIS SER SEQRES 3 A 288 HIS ARG TRP HIS LEU TYR ARG VAL GLU LEU ALA ASP GLY SEQRES 4 A 288 THR PRO LEU PHE VAL LYS ALA LEU PRO ASP ASP ALA PRO SEQRES 5 A 288 ALA LEU ASP GLY LEU PHE ARG ALA GLU ALA LEU GLY LEU SEQRES 6 A 288 ASP TRP LEU GLY ARG SER PHE GLY SER PRO VAL PRO GLN SEQRES 7 A 288 VAL ALA GLY TRP ASP ASP ARG THR LEU ALA MSE GLU TRP SEQRES 8 A 288 VAL ASP GLU ARG PRO PRO THR PRO GLU ALA ALA GLU ARG SEQRES 9 A 288 PHE GLY HIS GLN LEU ALA ALA MSE HIS LEU ALA GLY ALA SEQRES 10 A 288 GLU SER PHE GLY ALA THR TRP ASP GLY TYR ILE GLY PRO SEQRES 11 A 288 LEU PRO MSE ASP ASN THR PRO ARG SER THR TRP PRO GLU SEQRES 12 A 288 PHE TYR ALA GLU GLN ARG ILE LEU PRO TYR LEU ARG ARG SEQRES 13 A 288 ALA ALA ASP ARG GLY ALA LEU THR PRO GLY ASP VAL ARG SEQRES 14 A 288 LEU VAL GLU LYS VAL LEU ASP ALA LEU ASP HIS LEU ALA SEQRES 15 A 288 GLY ASP PRO GLU PRO PRO ALA ARG ILE HIS GLY ASP LEU SEQRES 16 A 288 TRP ASN GLY ASN VAL LEU TRP GLN ASP ASP GLY ALA VAL SEQRES 17 A 288 VAL ILE ASP PRO ALA ALA HIS GLY GLY HIS ARG GLU ALA SEQRES 18 A 288 ASP LEU ALA MSE LEU ALA LEU PHE GLY LEU PRO TYR LEU SEQRES 19 A 288 ASP ARG VAL ARG ASP ALA TYR ASN GLU VAL ALA PRO LEU SEQRES 20 A 288 ALA GLU GLY TRP ARG ALA ARG ILE PRO LEU HIS GLN LEU SEQRES 21 A 288 HIS PRO LEU LEU VAL HIS VAL CYS LEU PHE GLY ALA ALA SEQRES 22 A 288 TYR ARG THR THR LEU VAL ASP THR ALA ARG ALA ALA LEU SEQRES 23 A 288 ARG ALA MODRES 3F7W MSE A 88 MET SELENOMETHIONINE MODRES 3F7W MSE A 111 MET SELENOMETHIONINE MODRES 3F7W MSE A 132 MET SELENOMETHIONINE MODRES 3F7W MSE A 224 MET SELENOMETHIONINE HET MSE A 88 8 HET MSE A 111 8 HET MSE A 132 8 HET MSE A 224 8 HET UNL A 288 7 HET CL A 289 1 HET CL A 290 1 HET EDO A 291 4 HET EDO A 292 4 HET EDO A 293 4 HET EDO A 294 4 HET EDO A 295 4 HET PEG A 296 6 HETNAM MSE SELENOMETHIONINE HETNAM UNL UNKNOWN LIGAND HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 10 PEG C4 H10 O3 FORMUL 11 HOH *323(H2 O) HELIX 1 1 VAL A 1 GLY A 13 1 13 HELIX 2 2 GLY A 55 GLY A 68 1 14 HELIX 3 3 THR A 97 ALA A 114 1 18 HELIX 4 4 THR A 139 ILE A 149 1 11 HELIX 5 5 ILE A 149 ARG A 159 1 11 HELIX 6 6 THR A 163 ALA A 176 1 14 HELIX 7 7 ALA A 176 ALA A 181 1 6 HELIX 8 8 TRP A 195 GLY A 197 5 3 HELIX 9 9 HIS A 217 GLY A 229 1 13 HELIX 10 10 TYR A 232 ALA A 244 1 13 HELIX 11 11 GLY A 249 GLY A 270 1 22 HELIX 12 12 TYR A 273 ARG A 286 1 14 SHEET 1 A 5 VAL A 16 SER A 25 0 SHEET 2 A 5 TRP A 28 LEU A 35 -1 O GLU A 34 N ALA A 17 SHEET 3 A 5 PRO A 40 ALA A 45 -1 O LEU A 41 N VAL A 33 SHEET 4 A 5 THR A 85 GLU A 89 -1 O MSE A 88 N PHE A 42 SHEET 5 A 5 VAL A 78 ASP A 82 -1 N GLY A 80 O ALA A 87 SHEET 1 B 2 GLY A 125 ILE A 127 0 SHEET 2 B 2 LEU A 130 MSE A 132 -1 O LEU A 130 N ILE A 127 SHEET 1 C 2 ALA A 188 ILE A 190 0 SHEET 2 C 2 HIS A 214 GLY A 216 -1 O GLY A 216 N ALA A 188 SHEET 1 D 2 VAL A 199 GLN A 202 0 SHEET 2 D 2 GLY A 205 VAL A 208 -1 O VAL A 207 N LEU A 200 LINK C ALA A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N GLU A 89 1555 1555 1.33 LINK C ALA A 110 N MSE A 111 1555 1555 1.33 LINK C MSE A 111 N HIS A 112 1555 1555 1.33 LINK C PRO A 131 N MSE A 132 1555 1555 1.33 LINK C MSE A 132 N ASP A 133 1555 1555 1.33 LINK C ALA A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N LEU A 225 1555 1555 1.33 SITE 1 AC1 7 PHE A 42 GLU A 89 TRP A 90 VAL A 91 SITE 2 AC1 7 ILE A 209 HOH A 305 HOH A 444 SITE 1 AC2 4 ARG A 14 ASP A 37 HOH A 381 HOH A 597 SITE 1 AC3 2 TYR A 232 ARG A 235 SITE 1 AC4 7 ARG A 14 THR A 39 PHE A 71 GLY A 72 SITE 2 AC4 7 EDO A 294 HOH A 404 HOH A 594 SITE 1 AC5 4 TRP A 81 HOH A 362 HOH A 463 HOH A 576 SITE 1 AC6 6 TRP A 28 LYS A 44 LEU A 56 GLU A 60 SITE 2 AC6 6 HOH A 345 HOH A 407 SITE 1 AC7 6 PHE A 71 GLN A 77 EDO A 291 HOH A 352 SITE 2 AC7 6 HOH A 468 HOH A 580 SITE 1 AC8 8 HIS A 112 GLY A 115 GLU A 185 PRO A 186 SITE 2 AC8 8 PRO A 187 ALA A 188 ARG A 218 HOH A 474 SITE 1 AC9 5 GLY A 125 MSE A 132 ASP A 133 HOH A 327 SITE 2 AC9 5 HOH A 503 CRYST1 91.178 91.178 82.049 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010968 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012188 0.00000