HEADER LIGASE/DNA 12-NOV-08 3F8J TITLE MOUSE UHRF1 SRA DOMAIN BOUND WITH HEMI-METHYLATED CPG, CRYSTAL TITLE 2 STRUCTURE IN SPACE GROUP C222(1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: YDG DOMAIN: UNP RESIDUES 417-628; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*DCP*DCP*DAP*DTP*DGP*(5CM)P*DGP*DCP*DTP*DGP*DAP*DC)- COMPND 8 3'; COMPND 9 CHAIN: F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 5'-D(*DGP*DTP*DCP*DAP*DGP*DCP*DGP*DCP*DAP*DTP*DGP*DG)-3'; COMPND 13 CHAIN: G; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: UHRF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PXC675; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC DNA OLIGO; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 OTHER_DETAILS: SYNTHETIC DNA OLIGO KEYWDS UHRF1, SRA, BASE FLIPPING, 5-METHYLCYTOSINE, CPG METHYLATION, CELL KEYWDS 2 CYCLE, DEVELOPMENTAL PROTEIN, DNA DAMAGE, DNA REPAIR, DNA-BINDING, KEYWDS 3 LIGASE, METAL-BINDING, NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, KEYWDS 4 TRANSCRIPTION REGULATION, UBL CONJUGATION PATHWAY, ZINC-FINGER, KEYWDS 5 LIGASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,J.R.HORTON,X.ZHANG,X.CHENG REVDAT 5 06-SEP-23 3F8J 1 COMPND SOURCE REMARK DBREF REVDAT 5 2 1 LINK REVDAT 4 13-JUL-11 3F8J 1 VERSN REVDAT 3 24-MAR-09 3F8J 1 JRNL REVDAT 2 20-JAN-09 3F8J 1 JRNL REVDAT 1 06-JAN-09 3F8J 0 JRNL AUTH H.HASHIMOTO,J.R.HORTON,X.ZHANG,X.CHENG JRNL TITL UHRF1, A MODULAR MULTI-DOMAIN PROTEIN, REGULATES JRNL TITL 2 REPLICATION-COUPLED CROSSTALK BETWEEN DNA METHYLATION AND JRNL TITL 3 HISTONE MODIFICATIONS. JRNL REF EPIGENETICS V. 4 8 2009 JRNL REFN ISSN 1559-2294 JRNL PMID 19077538 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.HASHIMOTO,J.R.HORTON,X.ZHANG,M.BOSTICK,S.E.JACOBSEN, REMARK 1 AUTH 2 X.CHENG REMARK 1 TITL THE SRA DOMAIN OF UHRF1 FLIPS 5-METHYLCYTOSINE OUT OF THE REMARK 1 TITL 2 DNA HELIX. REMARK 1 REF NATURE V. 455 826 2008 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 18772888 REMARK 1 DOI 10.1038/NATURE07280 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 412547.200 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 22327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1073 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1931 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 96 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1609 REMARK 3 NUCLEIC ACID ATOMS : 487 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.95000 REMARK 3 B22 (A**2) : -4.27000 REMARK 3 B33 (A**2) : 10.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 30.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.12 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.230 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.800 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.870 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.770 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 46.64 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3F8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23488 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 29.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZO0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.4 M NACL, PH 7.0, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.83500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.79500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.83500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.79500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.25500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.83500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.79500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.25500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.83500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.79500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ONE SRA-DNA COMPLEX PER ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 623 REMARK 465 LYS B 624 REMARK 465 SER B 625 REMARK 465 ARG B 626 REMARK 465 LYS B 627 REMARK 465 ARG B 628 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE B 417 CG1 CG2 CD1 REMARK 470 GLU B 529 CG CD OE1 OE2 REMARK 470 GLU B 617 CG CD OE1 OE2 REMARK 470 LEU B 619 CG CD1 CD2 REMARK 470 LYS B 622 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 460 -64.35 -127.09 REMARK 500 ASN B 508 -126.76 42.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG G 433 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 192 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 199 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZO0 RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN P2(1)2(1)2(1) SPACE GROUP REMARK 900 RELATED ID: 2ZO1 RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN P4(1)2(1)2 SPACE GROUP REMARK 900 RELATED ID: 2ZO2 RELATED DB: PDB REMARK 900 SRA-DNA NON-SPECIFIC COMPLEX IN P6(1)22 SPACE GROUP REMARK 900 RELATED ID: 3F8I RELATED DB: PDB REMARK 900 SRA-DNA COMPLEX IN P2(1) SPACE GROUP REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS USED NATIVE SEQUENCE ILE VAL REMARK 999 FOR RESIDUES 417 AND 418 IN THIS ENTRY REMARK 999 (WITHOUT ANY EXPRESSION TAG). DBREF 3F8J B 417 628 UNP Q8VDF2 UHRF1_MOUSE 417 628 DBREF 3F8J F 402 413 PDB 3F8J 3F8J 402 413 DBREF 3F8J G 421 433 PDB 3F8J 3F8J 421 433 SEQRES 1 B 212 ILE VAL PRO ALA ASN HIS PHE GLY PRO ILE PRO GLY VAL SEQRES 2 B 212 PRO VAL GLY THR MET TRP ARG PHE ARG VAL GLN VAL SER SEQRES 3 B 212 GLU SER GLY VAL HIS ARG PRO HIS VAL ALA GLY ILE HIS SEQRES 4 B 212 GLY ARG SER ASN ASP GLY ALA TYR SER LEU VAL LEU ALA SEQRES 5 B 212 GLY GLY TYR GLU ASP ASP VAL ASP ASN GLY ASN TYR PHE SEQRES 6 B 212 THR TYR THR GLY SER GLY GLY ARG ASP LEU SER GLY ASN SEQRES 7 B 212 LYS ARG THR ALA GLY GLN SER SER ASP GLN LYS LEU THR SEQRES 8 B 212 ASN ASN ASN ARG ALA LEU ALA LEU ASN CYS HIS SER PRO SEQRES 9 B 212 ILE ASN GLU LYS GLY ALA GLU ALA GLU ASP TRP ARG GLN SEQRES 10 B 212 GLY LYS PRO VAL ARG VAL VAL ARG ASN MET LYS GLY GLY SEQRES 11 B 212 LYS HIS SER LYS TYR ALA PRO ALA GLU GLY ASN ARG TYR SEQRES 12 B 212 ASP GLY ILE TYR LYS VAL VAL LYS TYR TRP PRO GLU ARG SEQRES 13 B 212 GLY LYS SER GLY PHE LEU VAL TRP ARG TYR LEU LEU ARG SEQRES 14 B 212 ARG ASP ASP THR GLU PRO GLU PRO TRP THR ARG GLU GLY SEQRES 15 B 212 LYS ASP ARG THR ARG GLN LEU GLY LEU THR MET GLN TYR SEQRES 16 B 212 PRO GLU GLY TYR LEU GLU ALA LEU ALA ASN LYS GLU LYS SEQRES 17 B 212 SER ARG LYS ARG SEQRES 1 F 12 DC DC DA DT DG 5CM DG DC DT DG DA DC SEQRES 1 G 12 DG DT DC DA DG DC DG DC DA DT DG DG MODRES 3F8J 5CM F 407 DC HET 5CM F 407 20 HET GOL B 191 6 HET GOL B 192 6 HET GOL B 193 6 HET GOL B 194 6 HET GOL B 195 6 HET GOL B 196 6 HET GOL B 197 6 HET GOL B 198 6 HET GOL B 199 6 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 5CM C10 H16 N3 O7 P FORMUL 4 GOL 9(C3 H8 O3) FORMUL 13 HOH *161(H2 O) HELIX 1 1 PHE B 437 SER B 444 1 8 HELIX 2 2 THR B 507 CYS B 517 1 11 HELIX 3 3 ASP B 530 GLY B 534 5 5 HELIX 4 4 LYS B 544 HIS B 548 5 5 HELIX 5 5 THR B 595 LEU B 605 1 11 HELIX 6 6 GLY B 614 LYS B 622 1 9 SHEET 1 A 5 MET B 434 TRP B 435 0 SHEET 2 A 5 ASN B 557 ARG B 572 -1 O ASN B 557 N TRP B 435 SHEET 3 A 5 LEU B 578 ARG B 586 -1 O LEU B 583 N LYS B 567 SHEET 4 A 5 TYR B 480 THR B 484 -1 N PHE B 481 O LEU B 584 SHEET 5 A 5 VAL B 475 ASN B 477 -1 N VAL B 475 O THR B 482 SHEET 1 B 5 ILE B 454 ARG B 457 0 SHEET 2 B 5 GLY B 461 LEU B 467 -1 O SER B 464 N HIS B 455 SHEET 3 B 5 VAL B 537 ASN B 542 1 O ASN B 542 N LEU B 467 SHEET 4 B 5 ASN B 557 ARG B 572 -1 O ASP B 560 N VAL B 539 SHEET 5 B 5 ALA B 526 GLU B 527 -1 N ALA B 526 O TYR B 568 LINK O3' DG F 406 P 5CM F 407 1555 1555 1.61 LINK O3' 5CM F 407 P DG F 408 1555 1555 1.61 SITE 1 AC1 7 HOH B 72 HOH B 79 HOH B 126 GLY B 469 SITE 2 AC1 7 ASP B 474 GLY B 545 HIS B 548 SITE 1 AC2 6 HOH B 69 HOH B 157 GLN B 504 LYS B 505 SITE 2 AC2 6 LEU B 506 TRP B 580 SITE 1 AC3 3 ARG B 558 PRO B 593 LYS B 599 SITE 1 AC4 7 HOH B 119 HOH B 134 PRO B 425 ILE B 562 SITE 2 AC4 7 ASP B 587 ASP B 588 THR B 589 SITE 1 AC5 4 HOH B 144 GOL B 196 PHE B 423 PRO B 536 SITE 1 AC6 5 HOH B 110 HOH B 119 GOL B 195 PRO B 536 SITE 2 AC6 5 LYS B 564 SITE 1 AC7 4 HOH B 12 ASN B 479 ARG B 585 ARG B 586 SITE 1 AC8 6 HOH B 38 ASP B 530 ARG B 532 ARG B 601 SITE 2 AC8 6 GLN B 604 DC F 402 SITE 1 AC9 10 HOH B 121 ASN B 421 ARG B 457 ASN B 459 SITE 2 AC9 10 ASP B 460 TYR B 463 ASP B 473 GLY B 573 SITE 3 AC9 10 LYS B 574 ARG B 581 CRYST1 61.670 91.590 118.510 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016215 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008438 0.00000