HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-NOV-08 3F9U TITLE CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF PUTATIVE EXPORTED CYTOCHROME TITLE 2 C BIOGENESIS-RELATED PROTEIN FROM BACTEROIDES FRAGILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE EXPORTED CYTOCHROME C BIOGENESIS-RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS NCTC 9343; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: STRAIN ATCC 25285 / NCTC 9343; SOURCE 5 GENE: BF3033; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DERIVATIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS EXPORTED CYTOCHROME C BIOGENESIS-RELATED PROTEIN, BACTEROIDES KEYWDS 2 FRAGILIS, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,C.TESAR,G.COBB,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 09-OCT-24 3F9U 1 REMARK REVDAT 3 27-DEC-23 3F9U 1 REMARK LINK REVDAT 2 13-JUL-11 3F9U 1 VERSN REVDAT 1 02-DEC-08 3F9U 0 JRNL AUTH C.CHANG,C.TESAR,G.COBB,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF PUTATIVE EXPORTED JRNL TITL 2 CYTOCHROME C BIOGENESIS-RELATED PROTEIN FROM BACTEROIDES JRNL TITL 3 FRAGILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 19004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1311 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2384 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.228 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.198 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.873 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2525 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3430 ; 1.358 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 6.063 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;31.480 ;25.489 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;14.047 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ; 9.309 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1972 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1510 ; 0.754 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2434 ; 1.393 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1015 ; 2.220 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 988 ; 3.479 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 525 A 589 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2486 32.6776 48.7106 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.0814 REMARK 3 T33: 0.0825 T12: -0.0318 REMARK 3 T13: 0.0228 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 3.0123 L22: 0.9870 REMARK 3 L33: 2.8000 L12: -0.1912 REMARK 3 L13: -2.1407 L23: 0.3458 REMARK 3 S TENSOR REMARK 3 S11: 0.1686 S12: 0.1691 S13: 0.3571 REMARK 3 S21: -0.1698 S22: -0.0316 S23: -0.0227 REMARK 3 S31: -0.3614 S32: -0.0752 S33: -0.1369 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 590 A 612 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2841 40.5303 71.5346 REMARK 3 T TENSOR REMARK 3 T11: 0.1134 T22: 0.2459 REMARK 3 T33: 0.1364 T12: -0.0781 REMARK 3 T13: 0.0058 T23: -0.1036 REMARK 3 L TENSOR REMARK 3 L11: 10.0698 L22: 11.0517 REMARK 3 L33: 11.1942 L12: -4.5352 REMARK 3 L13: -1.8381 L23: 0.4374 REMARK 3 S TENSOR REMARK 3 S11: -0.1178 S12: -1.1452 S13: 0.2143 REMARK 3 S21: 0.7681 S22: 0.2939 S23: -0.6366 REMARK 3 S31: -0.1155 S32: 0.4332 S33: -0.1761 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 613 A 669 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6217 24.0424 54.1760 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.0708 REMARK 3 T33: 0.0536 T12: -0.0181 REMARK 3 T13: -0.0228 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 4.1045 L22: 3.0292 REMARK 3 L33: 5.3405 L12: -1.0020 REMARK 3 L13: -1.9359 L23: 2.1058 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: -0.2512 S13: -0.2009 REMARK 3 S21: 0.2941 S22: 0.0354 S23: -0.1482 REMARK 3 S31: 0.6489 S32: 0.1355 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 525 B 589 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5708 37.1245 74.0320 REMARK 3 T TENSOR REMARK 3 T11: 0.1230 T22: 0.0385 REMARK 3 T33: 0.0340 T12: 0.0108 REMARK 3 T13: 0.0045 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 2.6497 L22: 1.5680 REMARK 3 L33: 1.6857 L12: -0.2735 REMARK 3 L13: -0.0569 L23: -0.6576 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: -0.1143 S13: 0.1821 REMARK 3 S21: 0.2758 S22: 0.0685 S23: -0.1220 REMARK 3 S31: -0.2800 S32: 0.0833 S33: -0.0328 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 590 B 612 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9900 44.6482 51.3100 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.1405 REMARK 3 T33: 0.2212 T12: 0.0763 REMARK 3 T13: 0.0759 T23: 0.1094 REMARK 3 L TENSOR REMARK 3 L11: 10.5276 L22: 5.4029 REMARK 3 L33: 9.8924 L12: 0.6560 REMARK 3 L13: -1.5611 L23: 2.3375 REMARK 3 S TENSOR REMARK 3 S11: 0.1693 S12: 0.9519 S13: 0.4250 REMARK 3 S21: -0.7427 S22: -0.2050 S23: 0.2642 REMARK 3 S31: -0.9003 S32: -0.0706 S33: 0.0357 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 613 B 669 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7471 30.5880 68.5101 REMARK 3 T TENSOR REMARK 3 T11: 0.0276 T22: 0.0676 REMARK 3 T33: 0.0263 T12: -0.0059 REMARK 3 T13: -0.0142 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 2.3336 L22: 2.8519 REMARK 3 L33: 2.2403 L12: -0.8662 REMARK 3 L13: -1.1226 L23: -0.6566 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: 0.1696 S13: -0.1057 REMARK 3 S21: -0.1158 S22: -0.0125 S23: 0.2585 REMARK 3 S31: 0.1019 S32: -0.3184 S33: -0.0608 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3F9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1000050327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20107 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.87700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM NITRATE 20% PEG3350, REMARK 280 PH 6.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.77750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.08000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.08000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 136.16625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.08000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.08000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.38875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.08000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.08000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 136.16625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.08000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.08000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.38875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.77750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 498 REMARK 465 ASN A 499 REMARK 465 ALA A 500 REMARK 465 GLY A 501 REMARK 465 ALA A 502 REMARK 465 PRO A 503 REMARK 465 LEU A 504 REMARK 465 LYS A 505 REMARK 465 ALA A 506 REMARK 465 VAL A 507 REMARK 465 SER A 508 REMARK 465 ALA A 509 REMARK 465 PHE A 510 REMARK 465 ALA A 511 REMARK 465 PRO A 512 REMARK 465 PRO A 513 REMARK 465 MSE A 514 REMARK 465 LYS A 515 REMARK 465 THR A 516 REMARK 465 GLN A 517 REMARK 465 ASP A 518 REMARK 465 PHE A 519 REMARK 465 ASN A 520 REMARK 465 LEU A 521 REMARK 465 TYR A 522 REMARK 465 THR A 523 REMARK 465 ASN A 524 REMARK 465 SER B 498 REMARK 465 ASN B 499 REMARK 465 ALA B 500 REMARK 465 GLY B 501 REMARK 465 ALA B 502 REMARK 465 PRO B 503 REMARK 465 LEU B 504 REMARK 465 LYS B 505 REMARK 465 ALA B 506 REMARK 465 VAL B 507 REMARK 465 SER B 508 REMARK 465 ALA B 509 REMARK 465 PHE B 510 REMARK 465 ALA B 511 REMARK 465 PRO B 512 REMARK 465 PRO B 513 REMARK 465 MSE B 514 REMARK 465 LYS B 515 REMARK 465 THR B 516 REMARK 465 GLN B 517 REMARK 465 ASP B 518 REMARK 465 PHE B 519 REMARK 465 ASN B 520 REMARK 465 LEU B 521 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 604 OG1 CG2 REMARK 470 ARG A 606 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 522 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 606 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 637 O HOH B 159 2.13 REMARK 500 OD1 ASP B 531 O HOH B 50 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 669 O HOH B 102 3554 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 646 -135.15 -111.92 REMARK 500 ASP A 648 115.29 -160.92 REMARK 500 ASN B 602 107.13 -30.18 REMARK 500 ALA B 646 -134.26 -114.69 REMARK 500 ASP B 648 112.58 -166.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 668 LYS A 669 -146.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 670 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 671 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC61444.1 RELATED DB: TARGETDB DBREF 3F9U A 501 669 UNP Q5LAZ4 Q5LAZ4_BACFN 501 669 DBREF 3F9U B 501 669 UNP Q5LAZ4 Q5LAZ4_BACFN 501 669 SEQADV 3F9U SER A 498 UNP Q5LAZ4 EXPRESSION TAG SEQADV 3F9U ASN A 499 UNP Q5LAZ4 EXPRESSION TAG SEQADV 3F9U ALA A 500 UNP Q5LAZ4 EXPRESSION TAG SEQADV 3F9U SER B 498 UNP Q5LAZ4 EXPRESSION TAG SEQADV 3F9U ASN B 499 UNP Q5LAZ4 EXPRESSION TAG SEQADV 3F9U ALA B 500 UNP Q5LAZ4 EXPRESSION TAG SEQRES 1 A 172 SER ASN ALA GLY ALA PRO LEU LYS ALA VAL SER ALA PHE SEQRES 2 A 172 ALA PRO PRO MSE LYS THR GLN ASP PHE ASN LEU TYR THR SEQRES 3 A 172 ASN GLU VAL HIS ALA LYS PHE ASP ASP TYR ASP LEU GLY SEQRES 4 A 172 MSE GLU TYR ALA ARG GLN HIS ASN LYS PRO VAL MSE LEU SEQRES 5 A 172 ASP PHE THR GLY TYR GLY CYS VAL ASN CYS ARG LYS MSE SEQRES 6 A 172 GLU LEU ALA VAL TRP THR ASP PRO LYS VAL SER SER ILE SEQRES 7 A 172 ILE ASN ASN ASP TYR VAL LEU ILE THR LEU TYR VAL ASP SEQRES 8 A 172 ASN LYS THR PRO LEU THR GLU PRO VAL LYS ILE MSE GLU SEQRES 9 A 172 ASN GLY THR GLU ARG THR LEU ARG THR VAL GLY ASP LYS SEQRES 10 A 172 TRP SER TYR LEU GLN ARG VAL LYS PHE GLY ALA ASN ALA SEQRES 11 A 172 GLN PRO PHE TYR VAL LEU ILE ASP ASN GLU GLY ASN PRO SEQRES 12 A 172 LEU ASN LYS SER TYR ALA TYR ASP GLU ASP ILE SER LYS SEQRES 13 A 172 TYR ILE ASN PHE LEU GLN THR GLY LEU GLU ASN TYR ARG SEQRES 14 A 172 LYS GLU LYS SEQRES 1 B 172 SER ASN ALA GLY ALA PRO LEU LYS ALA VAL SER ALA PHE SEQRES 2 B 172 ALA PRO PRO MSE LYS THR GLN ASP PHE ASN LEU TYR THR SEQRES 3 B 172 ASN GLU VAL HIS ALA LYS PHE ASP ASP TYR ASP LEU GLY SEQRES 4 B 172 MSE GLU TYR ALA ARG GLN HIS ASN LYS PRO VAL MSE LEU SEQRES 5 B 172 ASP PHE THR GLY TYR GLY CYS VAL ASN CYS ARG LYS MSE SEQRES 6 B 172 GLU LEU ALA VAL TRP THR ASP PRO LYS VAL SER SER ILE SEQRES 7 B 172 ILE ASN ASN ASP TYR VAL LEU ILE THR LEU TYR VAL ASP SEQRES 8 B 172 ASN LYS THR PRO LEU THR GLU PRO VAL LYS ILE MSE GLU SEQRES 9 B 172 ASN GLY THR GLU ARG THR LEU ARG THR VAL GLY ASP LYS SEQRES 10 B 172 TRP SER TYR LEU GLN ARG VAL LYS PHE GLY ALA ASN ALA SEQRES 11 B 172 GLN PRO PHE TYR VAL LEU ILE ASP ASN GLU GLY ASN PRO SEQRES 12 B 172 LEU ASN LYS SER TYR ALA TYR ASP GLU ASP ILE SER LYS SEQRES 13 B 172 TYR ILE ASN PHE LEU GLN THR GLY LEU GLU ASN TYR ARG SEQRES 14 B 172 LYS GLU LYS MODRES 3F9U MSE A 537 MET SELENOMETHIONINE MODRES 3F9U MSE A 548 MET SELENOMETHIONINE MODRES 3F9U MSE A 562 MET SELENOMETHIONINE MODRES 3F9U MSE A 600 MET SELENOMETHIONINE MODRES 3F9U MSE B 537 MET SELENOMETHIONINE MODRES 3F9U MSE B 548 MET SELENOMETHIONINE MODRES 3F9U MSE B 562 MET SELENOMETHIONINE MODRES 3F9U MSE B 600 MET SELENOMETHIONINE HET MSE A 537 8 HET MSE A 548 8 HET MSE A 562 8 HET MSE A 600 8 HET MSE B 537 8 HET MSE B 548 8 HET MSE B 562 8 HET MSE B 600 8 HET NO3 A 701 4 HET NO3 A 702 4 HET EDO A 703 4 HET NO3 A 704 4 HET EDO A 670 4 HET NO3 A 671 4 HET NO3 B 702 4 HETNAM MSE SELENOMETHIONINE HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 NO3 5(N O3 1-) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 10 HOH *189(H2 O) HELIX 1 1 ASP A 532 HIS A 543 1 12 HELIX 2 2 CYS A 556 VAL A 566 1 11 HELIX 3 3 ASP A 569 TYR A 580 1 12 HELIX 4 4 VAL A 611 GLY A 624 1 14 HELIX 5 5 ASP A 650 GLU A 668 1 19 HELIX 6 6 ASP B 532 HIS B 543 1 12 HELIX 7 7 CYS B 556 VAL B 566 1 11 HELIX 8 8 ASP B 569 TYR B 580 1 12 HELIX 9 9 VAL B 611 GLY B 624 1 14 HELIX 10 10 ASP B 650 LYS B 667 1 18 SHEET 1 A 3 VAL A 581 TYR A 586 0 SHEET 2 A 3 VAL A 547 THR A 552 1 N ASP A 550 O ILE A 583 SHEET 3 A 3 PHE A 630 ILE A 634 -1 O VAL A 632 N LEU A 549 SHEET 1 B 2 PRO A 592 GLU A 601 0 SHEET 2 B 2 THR A 604 THR A 610 -1 O LEU A 608 N VAL A 597 SHEET 1 C 3 VAL B 581 TYR B 586 0 SHEET 2 C 3 VAL B 547 THR B 552 1 N ASP B 550 O LEU B 585 SHEET 3 C 3 PHE B 630 ILE B 634 -1 O VAL B 632 N LEU B 549 SHEET 1 D 2 PRO B 592 GLU B 601 0 SHEET 2 D 2 THR B 604 THR B 610 -1 O LEU B 608 N VAL B 597 SSBOND 1 CYS A 556 CYS A 559 1555 1555 2.95 SSBOND 2 CYS B 556 CYS B 559 1555 1555 2.97 LINK C GLY A 536 N MSE A 537 1555 1555 1.33 LINK C MSE A 537 N GLU A 538 1555 1555 1.33 LINK C VAL A 547 N MSE A 548 1555 1555 1.33 LINK C MSE A 548 N LEU A 549 1555 1555 1.32 LINK C LYS A 561 N MSE A 562 1555 1555 1.33 LINK C MSE A 562 N GLU A 563 1555 1555 1.33 LINK C ILE A 599 N MSE A 600 1555 1555 1.33 LINK C MSE A 600 N GLU A 601 1555 1555 1.33 LINK C GLY B 536 N MSE B 537 1555 1555 1.33 LINK C MSE B 537 N GLU B 538 1555 1555 1.34 LINK C VAL B 547 N MSE B 548 1555 1555 1.34 LINK C MSE B 548 N LEU B 549 1555 1555 1.33 LINK C LYS B 561 N MSE B 562 1555 1555 1.34 LINK C MSE B 562 N GLU B 563 1555 1555 1.33 LINK C ILE B 599 N MSE B 600 1555 1555 1.33 LINK C MSE B 600 N GLU B 601 1555 1555 1.33 CISPEP 1 ASN A 602 GLY A 603 0 -8.66 CISPEP 2 GLN A 628 PRO A 629 0 -1.69 CISPEP 3 ASN B 602 GLY B 603 0 -6.20 CISPEP 4 GLN B 628 PRO B 629 0 -1.49 SITE 1 AC1 3 ASN A 578 HOH B 13 HIS B 543 SITE 1 AC2 6 HOH A 129 HOH A 175 ASP A 531 ASP A 532 SITE 2 AC2 6 EDO A 703 THR B 594 SITE 1 AC3 5 HOH A 174 LYS A 614 NO3 A 671 NO3 A 702 SITE 2 AC3 5 LYS B 614 SITE 1 AC4 3 TYR A 645 ALA A 646 ASP A 648 SITE 1 AC5 5 ILE A 599 TYR A 617 LEU B 535 TYR B 539 SITE 2 AC5 5 GLN B 542 SITE 1 AC6 7 HOH A 51 HOH A 174 LEU A 593 THR A 594 SITE 2 AC6 7 EDO A 703 HOH B 50 ASP B 532 SITE 1 AC7 4 HOH A 20 HOH A 60 HIS A 543 ASN B 578 CRYST1 64.160 64.160 181.555 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015586 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015586 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005508 0.00000