HEADER OXIDOREDUCTASE 19-NOV-08 3FBS TITLE THE CRYSTAL STRUCTURE OF THE OXIDOREDUCTASE FROM AGROBACTERIUM TITLE 2 TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: STR. C58; SOURCE 5 GENE: AGR_C_405, ATU0238, GI:17934154; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS OXIDOREDUCTASE, STRUCTURAL GENOMICS, PSI2, MCSG, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,X.XU,H.ZHENG,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 27-DEC-23 3FBS 1 REMARK REVDAT 2 13-JUL-11 3FBS 1 VERSN REVDAT 1 23-DEC-08 3FBS 0 JRNL AUTH R.ZHANG,X.XU,H.ZHENG,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE OXIDOREDUCTASE FROM JRNL TITL 2 AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED 2008 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36027 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1896 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.1920 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 123 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.991 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4661 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3143 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6330 ; 1.905 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7592 ; 1.131 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 590 ; 6.617 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;30.474 ;22.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 731 ;15.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;20.079 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 692 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5222 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 982 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2905 ; 1.097 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1229 ; 0.289 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4616 ; 2.029 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1756 ; 3.391 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1714 ; 5.489 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 12 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 50 REMARK 3 RESIDUE RANGE : A 51 A 100 REMARK 3 RESIDUE RANGE : A 101 A 150 REMARK 3 RESIDUE RANGE : A 151 A 200 REMARK 3 RESIDUE RANGE : A 201 A 250 REMARK 3 RESIDUE RANGE : A 251 A 294 REMARK 3 RESIDUE RANGE : B 1 B 50 REMARK 3 RESIDUE RANGE : B 51 B 100 REMARK 3 RESIDUE RANGE : B 101 B 150 REMARK 3 RESIDUE RANGE : B 151 B 200 REMARK 3 RESIDUE RANGE : B 201 B 250 REMARK 3 RESIDUE RANGE : B 251 B 295 REMARK 3 ORIGIN FOR THE GROUP (A): 45.5380 53.4470 12.5630 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.0654 REMARK 3 T33: 0.0104 T12: -0.0230 REMARK 3 T13: -0.0147 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.3856 L22: 0.4134 REMARK 3 L33: 0.1959 L12: 0.1260 REMARK 3 L13: -0.0403 L23: 0.0678 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.0420 S13: 0.0200 REMARK 3 S21: 0.1169 S22: -0.0438 S23: -0.0069 REMARK 3 S31: -0.0762 S32: 0.0288 S33: 0.0239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794, 0.9796 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36027 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 80.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 17.60 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 16.90 REMARK 200 R MERGE FOR SHELL (I) : 0.77200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NAHEPES, 0.1M NACL, 1.6M REMARK 280 (NH4)2SO4, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.61850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.59500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.30925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.59500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.92775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.59500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.30925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.59500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.92775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.61850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -119.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 295 REMARK 465 MET A 296 REMARK 465 ARG A 297 REMARK 465 MET B 296 REMARK 465 ARG B 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 30 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 LEU A 30 CB - CG - CD2 ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 -148.74 -106.86 REMARK 500 ARG A 97 127.91 9.54 REMARK 500 ALA A 107 41.76 -143.58 REMARK 500 MET A 152 7.87 -59.52 REMARK 500 ALA A 203 53.86 -146.83 REMARK 500 THR A 227 49.49 -100.46 REMARK 500 SER B 11 -143.63 -104.62 REMARK 500 ALA B 107 43.43 -141.67 REMARK 500 ALA B 203 46.93 -140.38 REMARK 500 THR B 227 54.59 -103.60 REMARK 500 ALA B 270 75.68 -114.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6127 RELATED DB: TARGETDB DBREF 3FBS A 1 297 UNP A9CKI7 A9CKI7_AGRT5 1 297 DBREF 3FBS B 1 297 UNP A9CKI7 A9CKI7_AGRT5 1 297 SEQRES 1 A 297 MET LYS PHE ASP VAL ILE ILE ILE GLY GLY SER TYR ALA SEQRES 2 A 297 GLY LEU SER ALA ALA LEU GLN LEU GLY ARG ALA ARG LYS SEQRES 3 A 297 ASN ILE LEU LEU VAL ASP ALA GLY GLU ARG ARG ASN ARG SEQRES 4 A 297 PHE ALA SER HIS SER HIS GLY PHE LEU GLY GLN ASP GLY SEQRES 5 A 297 LYS ALA PRO GLY GLU ILE ILE ALA GLU ALA ARG ARG GLN SEQRES 6 A 297 ILE GLU ARG TYR PRO THR ILE HIS TRP VAL GLU GLY ARG SEQRES 7 A 297 VAL THR ASP ALA LYS GLY SER PHE GLY GLU PHE ILE VAL SEQRES 8 A 297 GLU ILE ASP GLY GLY ARG ARG GLU THR ALA GLY ARG LEU SEQRES 9 A 297 ILE LEU ALA MET GLY VAL THR ASP GLU LEU PRO GLU ILE SEQRES 10 A 297 ALA GLY LEU ARG GLU ARG TRP GLY SER ALA VAL PHE HIS SEQRES 11 A 297 CYS PRO TYR CYS HIS GLY TYR GLU LEU ASP GLN GLY LYS SEQRES 12 A 297 ILE GLY VAL ILE ALA ALA SER PRO MET ALA ILE HIS HIS SEQRES 13 A 297 ALA LEU MET LEU PRO ASP TRP GLY GLU THR THR PHE PHE SEQRES 14 A 297 THR ASN GLY ILE VAL GLU PRO ASP ALA ASP GLN HIS ALA SEQRES 15 A 297 LEU LEU ALA ALA ARG GLY VAL ARG VAL GLU THR THR ARG SEQRES 16 A 297 ILE ARG GLU ILE ALA GLY HIS ALA ASP VAL VAL LEU ALA SEQRES 17 A 297 ASP GLY ARG SER ILE ALA LEU ALA GLY LEU PHE THR GLN SEQRES 18 A 297 PRO LYS LEU ARG ILE THR VAL ASP TRP ILE GLU LYS LEU SEQRES 19 A 297 GLY CYS ALA VAL GLU GLU GLY PRO MET GLY SER THR ILE SEQRES 20 A 297 VAL THR ASP PRO MET LYS GLN THR THR ALA ARG GLY ILE SEQRES 21 A 297 PHE ALA CYS GLY ASP VAL ALA ARG PRO ALA GLY SER VAL SEQRES 22 A 297 ALA LEU ALA VAL GLY ASP GLY ALA MET ALA GLY ALA ALA SEQRES 23 A 297 ALA HIS ARG SER ILE LEU PHE PRO GLU MET ARG SEQRES 1 B 297 MET LYS PHE ASP VAL ILE ILE ILE GLY GLY SER TYR ALA SEQRES 2 B 297 GLY LEU SER ALA ALA LEU GLN LEU GLY ARG ALA ARG LYS SEQRES 3 B 297 ASN ILE LEU LEU VAL ASP ALA GLY GLU ARG ARG ASN ARG SEQRES 4 B 297 PHE ALA SER HIS SER HIS GLY PHE LEU GLY GLN ASP GLY SEQRES 5 B 297 LYS ALA PRO GLY GLU ILE ILE ALA GLU ALA ARG ARG GLN SEQRES 6 B 297 ILE GLU ARG TYR PRO THR ILE HIS TRP VAL GLU GLY ARG SEQRES 7 B 297 VAL THR ASP ALA LYS GLY SER PHE GLY GLU PHE ILE VAL SEQRES 8 B 297 GLU ILE ASP GLY GLY ARG ARG GLU THR ALA GLY ARG LEU SEQRES 9 B 297 ILE LEU ALA MET GLY VAL THR ASP GLU LEU PRO GLU ILE SEQRES 10 B 297 ALA GLY LEU ARG GLU ARG TRP GLY SER ALA VAL PHE HIS SEQRES 11 B 297 CYS PRO TYR CYS HIS GLY TYR GLU LEU ASP GLN GLY LYS SEQRES 12 B 297 ILE GLY VAL ILE ALA ALA SER PRO MET ALA ILE HIS HIS SEQRES 13 B 297 ALA LEU MET LEU PRO ASP TRP GLY GLU THR THR PHE PHE SEQRES 14 B 297 THR ASN GLY ILE VAL GLU PRO ASP ALA ASP GLN HIS ALA SEQRES 15 B 297 LEU LEU ALA ALA ARG GLY VAL ARG VAL GLU THR THR ARG SEQRES 16 B 297 ILE ARG GLU ILE ALA GLY HIS ALA ASP VAL VAL LEU ALA SEQRES 17 B 297 ASP GLY ARG SER ILE ALA LEU ALA GLY LEU PHE THR GLN SEQRES 18 B 297 PRO LYS LEU ARG ILE THR VAL ASP TRP ILE GLU LYS LEU SEQRES 19 B 297 GLY CYS ALA VAL GLU GLU GLY PRO MET GLY SER THR ILE SEQRES 20 B 297 VAL THR ASP PRO MET LYS GLN THR THR ALA ARG GLY ILE SEQRES 21 B 297 PHE ALA CYS GLY ASP VAL ALA ARG PRO ALA GLY SER VAL SEQRES 22 B 297 ALA LEU ALA VAL GLY ASP GLY ALA MET ALA GLY ALA ALA SEQRES 23 B 297 ALA HIS ARG SER ILE LEU PHE PRO GLU MET ARG HET FAD A 298 53 HET SO4 A 299 5 HET SO4 A 300 5 HET MG A 301 1 HET FAD B 298 53 HET SO4 B 299 5 HET MG B 300 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 SO4 3(O4 S 2-) FORMUL 6 MG 2(MG 2+) FORMUL 10 HOH *325(H2 O) HELIX 1 1 SER A 11 ALA A 24 1 14 HELIX 2 2 ARG A 36 ALA A 41 5 6 HELIX 3 3 ALA A 54 GLU A 67 1 14 HELIX 4 4 LEU A 120 TRP A 124 5 5 HELIX 5 5 CYS A 131 GLY A 136 1 6 HELIX 6 6 TYR A 137 ASP A 140 5 4 HELIX 7 7 MET A 152 LEU A 160 1 9 HELIX 8 8 PRO A 161 TRP A 163 5 3 HELIX 9 9 ASP A 177 ARG A 187 1 11 HELIX 10 10 TRP A 230 GLY A 235 1 6 HELIX 11 11 GLY A 264 ARG A 268 5 5 HELIX 12 12 SER A 272 PHE A 293 1 22 HELIX 13 13 SER B 11 ALA B 24 1 14 HELIX 14 14 ALA B 54 GLU B 67 1 14 HELIX 15 15 LEU B 120 TRP B 124 5 5 HELIX 16 16 CYS B 131 GLY B 136 1 6 HELIX 17 17 TYR B 137 ASP B 140 5 4 HELIX 18 18 MET B 152 LEU B 160 1 9 HELIX 19 19 ASP B 177 GLY B 188 1 12 HELIX 20 20 TRP B 230 GLY B 235 1 6 HELIX 21 21 GLY B 264 ARG B 268 5 5 HELIX 22 22 SER B 272 PHE B 293 1 22 SHEET 1 A 6 ILE A 72 GLU A 76 0 SHEET 2 A 6 ILE A 28 ASP A 32 1 N LEU A 30 O HIS A 73 SHEET 3 A 6 PHE A 3 ILE A 8 1 N ILE A 7 O VAL A 31 SHEET 4 A 6 ARG A 98 LEU A 106 1 O ILE A 105 N ILE A 8 SHEET 5 A 6 GLU A 88 ILE A 93 -1 N PHE A 89 O ALA A 101 SHEET 6 A 6 VAL A 79 SER A 85 -1 N LYS A 83 O ILE A 90 SHEET 1 B 5 ILE A 72 GLU A 76 0 SHEET 2 B 5 ILE A 28 ASP A 32 1 N LEU A 30 O HIS A 73 SHEET 3 B 5 PHE A 3 ILE A 8 1 N ILE A 7 O VAL A 31 SHEET 4 B 5 ARG A 98 LEU A 106 1 O ILE A 105 N ILE A 8 SHEET 5 B 5 ILE A 260 ALA A 262 1 O PHE A 261 N LEU A 106 SHEET 1 C 2 THR A 111 GLU A 113 0 SHEET 2 C 2 LYS A 223 ARG A 225 -1 O ARG A 225 N THR A 111 SHEET 1 D 5 VAL A 128 PHE A 129 0 SHEET 2 D 5 GLY A 217 THR A 220 1 O LEU A 218 N PHE A 129 SHEET 3 D 5 LYS A 143 ILE A 147 1 N ILE A 147 O PHE A 219 SHEET 4 D 5 GLU A 165 PHE A 169 1 O GLU A 165 N ILE A 144 SHEET 5 D 5 ARG A 190 GLU A 192 1 O GLU A 192 N PHE A 168 SHEET 1 E 3 ILE A 196 ALA A 200 0 SHEET 2 E 3 ALA A 203 LEU A 207 -1 O VAL A 206 N GLU A 198 SHEET 3 E 3 SER A 212 LEU A 215 -1 O ILE A 213 N VAL A 205 SHEET 1 F 4 GLY A 244 ILE A 247 0 SHEET 2 F 4 VAL A 238 GLY A 241 -1 N GLU A 239 O THR A 246 SHEET 3 F 4 VAL B 238 GLY B 241 -1 O GLU B 240 N VAL A 238 SHEET 4 F 4 GLY B 244 ILE B 247 -1 O THR B 246 N GLU B 239 SHEET 1 G 6 ILE B 72 GLU B 76 0 SHEET 2 G 6 ILE B 28 ASP B 32 1 N LEU B 30 O HIS B 73 SHEET 3 G 6 PHE B 3 ILE B 8 1 N ILE B 7 O VAL B 31 SHEET 4 G 6 ARG B 97 LEU B 106 1 O ILE B 105 N ILE B 8 SHEET 5 G 6 GLU B 88 ILE B 93 -1 N VAL B 91 O GLU B 99 SHEET 6 G 6 VAL B 79 SER B 85 -1 N SER B 85 O GLU B 88 SHEET 1 H 5 ILE B 72 GLU B 76 0 SHEET 2 H 5 ILE B 28 ASP B 32 1 N LEU B 30 O HIS B 73 SHEET 3 H 5 PHE B 3 ILE B 8 1 N ILE B 7 O VAL B 31 SHEET 4 H 5 ARG B 97 LEU B 106 1 O ILE B 105 N ILE B 8 SHEET 5 H 5 ILE B 260 ALA B 262 1 O PHE B 261 N LEU B 106 SHEET 1 I 2 THR B 111 GLU B 113 0 SHEET 2 I 2 LYS B 223 ARG B 225 -1 O LYS B 223 N GLU B 113 SHEET 1 J 5 VAL B 128 PHE B 129 0 SHEET 2 J 5 GLY B 217 THR B 220 1 O LEU B 218 N PHE B 129 SHEET 3 J 5 GLN B 141 ILE B 147 1 N ILE B 147 O PHE B 219 SHEET 4 J 5 GLY B 164 PHE B 169 1 O PHE B 169 N VAL B 146 SHEET 5 J 5 ARG B 190 GLU B 192 1 O GLU B 192 N PHE B 168 SHEET 1 K 3 ILE B 196 ALA B 200 0 SHEET 2 K 3 ASP B 204 LEU B 207 -1 O ASP B 204 N ALA B 200 SHEET 3 K 3 SER B 212 ILE B 213 -1 O ILE B 213 N VAL B 205 SSBOND 1 CYS A 131 CYS A 134 1555 1555 2.14 SSBOND 2 CYS B 131 CYS B 134 1555 1555 2.54 SITE 1 AC1 37 GLY A 9 SER A 11 TYR A 12 ALA A 13 SITE 2 AC1 37 VAL A 31 ASP A 32 ALA A 33 GLY A 34 SITE 3 AC1 37 GLU A 35 ARG A 36 ARG A 37 ASN A 38 SITE 4 AC1 37 SER A 44 HIS A 45 GLY A 77 ARG A 78 SITE 5 AC1 37 VAL A 79 MET A 108 GLY A 109 ASP A 112 SITE 6 AC1 37 HIS A 130 CYS A 134 HIS A 135 VAL A 228 SITE 7 AC1 37 GLY A 264 ASP A 265 SER A 272 VAL A 273 SITE 8 AC1 37 MG A 301 HOH A 305 HOH A 310 HOH A 315 SITE 9 AC1 37 HOH A 319 HOH A 341 HOH A 342 HOH A 358 SITE 10 AC1 37 HOH A 486 SITE 1 AC2 6 HIS A 43 HIS A 45 GLU A 138 SO4 A 300 SITE 2 AC2 6 HOH A 333 HOH A 359 SITE 1 AC3 4 HIS A 43 HIS A 45 GLY A 52 SO4 A 299 SITE 1 AC4 4 PHE A 129 HIS A 130 CYS A 131 FAD A 298 SITE 1 AC5 36 GLY B 9 SER B 11 TYR B 12 ALA B 13 SITE 2 AC5 36 VAL B 31 ASP B 32 ALA B 33 GLY B 34 SITE 3 AC5 36 GLU B 35 ARG B 37 ASN B 38 SER B 44 SITE 4 AC5 36 HIS B 45 GLY B 77 ARG B 78 VAL B 79 SITE 5 AC5 36 ALA B 107 MET B 108 GLY B 109 ASP B 112 SITE 6 AC5 36 HIS B 130 CYS B 134 HIS B 135 VAL B 228 SITE 7 AC5 36 GLY B 264 ASP B 265 SER B 272 VAL B 273 SITE 8 AC5 36 HOH B 304 HOH B 308 HOH B 311 HOH B 312 SITE 9 AC5 36 HOH B 368 HOH B 392 HOH B 401 HOH B 413 SITE 1 AC6 7 SER B 42 HIS B 43 HIS B 45 GLU B 138 SITE 2 AC6 7 HOH B 326 HOH B 339 HOH B 407 SITE 1 AC7 2 HIS B 130 CYS B 131 CRYST1 95.190 95.190 149.237 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006701 0.00000