HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-NOV-08 3FDI TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN FROM EUBACTERIUM TITLE 2 VENTRIOSUM ATCC 27560. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUBACTERIUM VENTRIOSUM; SOURCE 3 ORGANISM_TAXID: 411463; SOURCE 4 STRAIN: ATCC 27560; SOURCE 5 GENE: EUBVEN_02315; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE(3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG9 KEYWDS CYTIDYLATE KINASE LIKE PROTEIN, PSI, MCSG, PRK04182 CLASS MEMBER, KEYWDS 2 STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER KEYWDS 3 FOR STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,L.KEIGHER,R.JEDRZEJCZAK,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 27-DEC-23 3FDI 1 LINK REVDAT 2 13-JUL-11 3FDI 1 VERSN REVDAT 1 20-JAN-09 3FDI 0 JRNL AUTH B.NOCEK,L.KEIGHER,R.JEDRZEJCZAK,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN FROM JRNL TITL 2 EUBACTERIUM VENTRIOSUM ATCC 27560. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 21205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1147 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1386 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2747 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.82000 REMARK 3 B22 (A**2) : -2.90000 REMARK 3 B33 (A**2) : 2.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.205 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2802 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1991 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3744 ; 1.770 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4853 ; 0.931 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 335 ; 6.628 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;27.740 ;24.470 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 569 ;16.370 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3015 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 550 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1683 ; 0.877 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 690 ; 0.208 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2716 ; 1.637 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1119 ; 2.757 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1028 ; 4.314 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 199 B 229 REMARK 3 RESIDUE RANGE : A 199 A 230 REMARK 3 RESIDUE RANGE : B 2005 B 5001 REMARK 3 RESIDUE RANGE : A 2002 A 5001 REMARK 3 RESIDUE RANGE : B 2 B 196 REMARK 3 RESIDUE RANGE : A 3 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): -1.5921 99.4929 22.3001 REMARK 3 T TENSOR REMARK 3 T11: 0.0660 T22: 0.0756 REMARK 3 T33: 0.0474 T12: 0.0095 REMARK 3 T13: -0.0017 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.5845 L22: 3.2462 REMARK 3 L33: 0.7650 L12: -0.0195 REMARK 3 L13: -0.2556 L23: 0.1231 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: -0.1210 S13: 0.1169 REMARK 3 S21: 0.1569 S22: 0.1212 S23: -0.3255 REMARK 3 S31: -0.0278 S32: -0.0410 S33: -0.0673 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22354 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELX, CCP4, PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M (NH4)2SO4, BIS-TRIS PH5.5, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.30650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.46600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.30650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 57.46600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS HIGHLY LIKELY REMARK 300 DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -239.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -36.69943 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.87187 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 44 REMARK 465 ARG A 45 REMARK 465 TYR A 46 REMARK 465 SER A 47 REMARK 465 LYS A 48 REMARK 465 GLU A 49 REMARK 465 VAL A 50 REMARK 465 LEU A 51 REMARK 465 GLU A 52 REMARK 465 ARG A 53 REMARK 465 PHE A 54 REMARK 465 ASP A 55 REMARK 465 GLU A 56 REMARK 465 LYS A 57 REMARK 465 PRO A 58 REMARK 465 MSE A 59 REMARK 465 ASN A 60 REMARK 465 PHE A 61 REMARK 465 ALA A 62 REMARK 465 PHE A 63 REMARK 465 ILE A 64 REMARK 465 PRO A 65 REMARK 465 VAL A 66 REMARK 465 PRO A 67 REMARK 465 ALA A 68 REMARK 465 GLY A 69 REMARK 465 GLY A 70 REMARK 465 THR A 71 REMARK 465 THR A 72 REMARK 465 ILE A 73 REMARK 465 SER A 74 REMARK 465 LEU A 75 REMARK 465 GLU A 76 REMARK 465 ASP A 197 REMARK 465 ASN A 198 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 GLY B 44 REMARK 465 ARG B 45 REMARK 465 TYR B 46 REMARK 465 SER B 47 REMARK 465 LYS B 48 REMARK 465 GLU B 49 REMARK 465 PRO B 67 REMARK 465 ALA B 68 REMARK 465 GLY B 69 REMARK 465 GLY B 70 REMARK 465 THR B 71 REMARK 465 THR B 72 REMARK 465 ILE B 73 REMARK 465 SER B 74 REMARK 465 LEU B 75 REMARK 465 GLU B 76 REMARK 465 ASP B 197 REMARK 465 ASN B 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 2 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 121 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 10 148.76 -172.08 REMARK 500 CYS A 104 26.60 48.08 REMARK 500 ARG B 10 149.16 -174.46 REMARK 500 LYS B 42 31.30 -91.06 REMARK 500 ARG B 53 74.06 -156.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B2006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B5001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC21034 RELATED DB: TARGETDB DBREF 3FDI A 1 198 UNP A5Z9C0 A5Z9C0_9FIRM 1 198 DBREF 3FDI B 1 198 UNP A5Z9C0 A5Z9C0_9FIRM 1 198 SEQADV 3FDI SER A -2 UNP A5Z9C0 EXPRESSION TAG SEQADV 3FDI ASN A -1 UNP A5Z9C0 EXPRESSION TAG SEQADV 3FDI ALA A 0 UNP A5Z9C0 EXPRESSION TAG SEQADV 3FDI SER B -2 UNP A5Z9C0 EXPRESSION TAG SEQADV 3FDI ASN B -1 UNP A5Z9C0 EXPRESSION TAG SEQADV 3FDI ALA B 0 UNP A5Z9C0 EXPRESSION TAG SEQRES 1 A 201 SER ASN ALA MSE LYS GLN ILE ILE ILE ALA ILE GLY ARG SEQRES 2 A 201 GLU PHE GLY SER GLY GLY HIS LEU VAL ALA LYS LYS LEU SEQRES 3 A 201 ALA GLU HIS TYR ASN ILE PRO LEU TYR SER LYS GLU LEU SEQRES 4 A 201 LEU ASP GLU VAL ALA LYS ASP GLY ARG TYR SER LYS GLU SEQRES 5 A 201 VAL LEU GLU ARG PHE ASP GLU LYS PRO MSE ASN PHE ALA SEQRES 6 A 201 PHE ILE PRO VAL PRO ALA GLY GLY THR THR ILE SER LEU SEQRES 7 A 201 GLU GLN ASP ILE ALA ILE ARG GLN PHE ASN PHE ILE ARG SEQRES 8 A 201 LYS LYS ALA ASN GLU GLU LYS GLU SER PHE VAL ILE VAL SEQRES 9 A 201 GLY ARG CYS ALA GLU GLU ILE LEU SER ASP ASN PRO ASN SEQRES 10 A 201 MSE ILE SER ALA PHE ILE LEU GLY ASP LYS ASP THR LYS SEQRES 11 A 201 THR LYS ARG VAL MSE GLU ARG GLU GLY VAL ASP GLU LYS SEQRES 12 A 201 THR ALA LEU ASN MSE MSE LYS LYS MSE ASP LYS MSE ARG SEQRES 13 A 201 LYS VAL TYR HIS ASN PHE TYR CYS GLU SER LYS TRP GLY SEQRES 14 A 201 ASP SER ARG THR TYR ASP ILE CYS ILE LYS ILE GLY LYS SEQRES 15 A 201 VAL ASP VAL ASP THR ALA THR ASP MSE ILE ILE LYS TYR SEQRES 16 A 201 ILE ASP SER ARG ASP ASN SEQRES 1 B 201 SER ASN ALA MSE LYS GLN ILE ILE ILE ALA ILE GLY ARG SEQRES 2 B 201 GLU PHE GLY SER GLY GLY HIS LEU VAL ALA LYS LYS LEU SEQRES 3 B 201 ALA GLU HIS TYR ASN ILE PRO LEU TYR SER LYS GLU LEU SEQRES 4 B 201 LEU ASP GLU VAL ALA LYS ASP GLY ARG TYR SER LYS GLU SEQRES 5 B 201 VAL LEU GLU ARG PHE ASP GLU LYS PRO MSE ASN PHE ALA SEQRES 6 B 201 PHE ILE PRO VAL PRO ALA GLY GLY THR THR ILE SER LEU SEQRES 7 B 201 GLU GLN ASP ILE ALA ILE ARG GLN PHE ASN PHE ILE ARG SEQRES 8 B 201 LYS LYS ALA ASN GLU GLU LYS GLU SER PHE VAL ILE VAL SEQRES 9 B 201 GLY ARG CYS ALA GLU GLU ILE LEU SER ASP ASN PRO ASN SEQRES 10 B 201 MSE ILE SER ALA PHE ILE LEU GLY ASP LYS ASP THR LYS SEQRES 11 B 201 THR LYS ARG VAL MSE GLU ARG GLU GLY VAL ASP GLU LYS SEQRES 12 B 201 THR ALA LEU ASN MSE MSE LYS LYS MSE ASP LYS MSE ARG SEQRES 13 B 201 LYS VAL TYR HIS ASN PHE TYR CYS GLU SER LYS TRP GLY SEQRES 14 B 201 ASP SER ARG THR TYR ASP ILE CYS ILE LYS ILE GLY LYS SEQRES 15 B 201 VAL ASP VAL ASP THR ALA THR ASP MSE ILE ILE LYS TYR SEQRES 16 B 201 ILE ASP SER ARG ASP ASN MODRES 3FDI MSE A 115 MET SELENOMETHIONINE MODRES 3FDI MSE A 132 MET SELENOMETHIONINE MODRES 3FDI MSE A 145 MET SELENOMETHIONINE MODRES 3FDI MSE A 146 MET SELENOMETHIONINE MODRES 3FDI MSE A 149 MET SELENOMETHIONINE MODRES 3FDI MSE A 152 MET SELENOMETHIONINE MODRES 3FDI MSE A 188 MET SELENOMETHIONINE MODRES 3FDI MSE B 59 MET SELENOMETHIONINE MODRES 3FDI MSE B 115 MET SELENOMETHIONINE MODRES 3FDI MSE B 132 MET SELENOMETHIONINE MODRES 3FDI MSE B 145 MET SELENOMETHIONINE MODRES 3FDI MSE B 146 MET SELENOMETHIONINE MODRES 3FDI MSE B 149 MET SELENOMETHIONINE MODRES 3FDI MSE B 152 MET SELENOMETHIONINE MODRES 3FDI MSE B 188 MET SELENOMETHIONINE HET MSE A 115 8 HET MSE A 132 8 HET MSE A 145 8 HET MSE A 146 8 HET MSE A 149 8 HET MSE A 152 8 HET MSE A 188 8 HET MSE B 59 8 HET MSE B 115 8 HET MSE B 132 8 HET MSE B 145 8 HET MSE B 146 8 HET MSE B 149 8 HET MSE B 152 8 HET MSE B 188 8 HET SO4 A2002 5 HET SO4 A2003 5 HET CL A5001 1 HET SO4 B2005 5 HET SO4 B2006 5 HET CL B5001 1 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 CL 2(CL 1-) FORMUL 9 HOH *63(H2 O) HELIX 1 1 GLY A 15 TYR A 27 1 13 HELIX 2 2 SER A 33 VAL A 40 1 8 HELIX 3 3 GLN A 77 GLU A 93 1 17 HELIX 4 4 CYS A 104 LEU A 109 1 6 HELIX 5 5 ASP A 123 GLY A 136 1 14 HELIX 6 6 ASP A 138 CYS A 161 1 24 HELIX 7 7 ASP A 167 TYR A 171 5 5 HELIX 8 8 ASP A 181 SER A 195 1 15 HELIX 9 9 GLY B 15 ASN B 28 1 14 HELIX 10 10 SER B 33 ALA B 41 1 9 HELIX 11 11 GLU B 56 ILE B 64 1 9 HELIX 12 12 GLN B 77 GLU B 93 1 17 HELIX 13 13 CYS B 104 LEU B 109 1 6 HELIX 14 14 ASP B 123 GLY B 136 1 14 HELIX 15 15 ASP B 138 CYS B 161 1 24 HELIX 16 16 ASP B 167 TYR B 171 5 5 HELIX 17 17 ASP B 181 SER B 195 1 15 SHEET 1 A10 LEU A 31 TYR A 32 0 SHEET 2 A10 PHE A 98 VAL A 101 1 O VAL A 99 N TYR A 32 SHEET 3 A10 ILE A 5 ARG A 10 1 N ILE A 8 O ILE A 100 SHEET 4 A10 MSE A 115 GLY A 122 1 O ALA A 118 N GLY A 9 SHEET 5 A10 ILE A 173 ILE A 177 1 O ILE A 177 N LEU A 121 SHEET 6 A10 ILE B 173 ILE B 177 -1 O CYS B 174 N CYS A 174 SHEET 7 A10 MSE B 115 GLY B 122 1 N LEU B 121 O ILE B 177 SHEET 8 A10 ILE B 5 ARG B 10 1 N ALA B 7 O ILE B 116 SHEET 9 A10 PHE B 98 VAL B 101 1 O ILE B 100 N ILE B 8 SHEET 10 A10 LEU B 31 TYR B 32 1 N TYR B 32 O VAL B 99 LINK C ASN A 114 N MSE A 115 1555 1555 1.31 LINK C MSE A 115 N ILE A 116 1555 1555 1.32 LINK C VAL A 131 N MSE A 132 1555 1555 1.34 LINK C MSE A 132 N GLU A 133 1555 1555 1.33 LINK C ASN A 144 N MSE A 145 1555 1555 1.33 LINK C MSE A 145 N MSE A 146 1555 1555 1.32 LINK C MSE A 146 N LYS A 147 1555 1555 1.32 LINK C LYS A 148 N MSE A 149 1555 1555 1.32 LINK C MSE A 149 N ASP A 150 1555 1555 1.34 LINK C LYS A 151 N MSE A 152 1555 1555 1.32 LINK C MSE A 152 N ARG A 153 1555 1555 1.32 LINK C ASP A 187 N MSE A 188 1555 1555 1.33 LINK C MSE A 188 N ILE A 189 1555 1555 1.34 LINK C PRO B 58 N MSE B 59 1555 1555 1.33 LINK C MSE B 59 N ASN B 60 1555 1555 1.34 LINK C ASN B 114 N MSE B 115 1555 1555 1.33 LINK C MSE B 115 N ILE B 116 1555 1555 1.32 LINK C VAL B 131 N MSE B 132 1555 1555 1.33 LINK C MSE B 132 N GLU B 133 1555 1555 1.33 LINK C ASN B 144 N MSE B 145 1555 1555 1.32 LINK C MSE B 145 N MSE B 146 1555 1555 1.32 LINK C MSE B 146 N LYS B 147 1555 1555 1.33 LINK C LYS B 148 N MSE B 149 1555 1555 1.31 LINK C MSE B 149 N ASP B 150 1555 1555 1.33 LINK C LYS B 151 N MSE B 152 1555 1555 1.32 LINK C MSE B 152 N ARG B 153 1555 1555 1.33 LINK C ASP B 187 N MSE B 188 1555 1555 1.32 LINK C MSE B 188 N ILE B 189 1555 1555 1.35 SITE 1 AC1 5 ARG A 10 LYS A 34 GLY A 102 ARG A 103 SITE 2 AC1 5 HOH A 221 SITE 1 AC2 9 ARG A 10 GLU A 11 GLY A 13 SER A 14 SITE 2 AC2 9 GLY A 15 GLY A 16 HIS A 17 ARG A 134 SITE 3 AC2 9 HOH A 199 SITE 1 AC3 3 GLY A 9 ARG A 10 TRP A 165 SITE 1 AC4 6 ARG B 10 LYS B 34 ARG B 103 HOH B 207 SITE 2 AC4 6 HOH B 225 HOH B 226 SITE 1 AC5 8 ARG B 10 GLU B 11 GLY B 13 SER B 14 SITE 2 AC5 8 GLY B 15 GLY B 16 HIS B 17 ARG B 134 SITE 1 AC6 4 GLY B 9 ARG B 10 TRP B 165 HOH B 207 CRYST1 84.613 114.932 59.530 90.00 128.06 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011819 0.000000 0.009252 0.00000 SCALE2 0.000000 0.008701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021333 0.00000