data_3FDL # _entry.id 3FDL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FDL pdb_00003fdl 10.2210/pdb3fdl/pdb RCSB RCSB050457 ? ? WWPDB D_1000050457 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3FDM _pdbx_database_related.details 'alpha/beta foldamer in complex with Bcl-xL' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FDL _pdbx_database_status.recvd_initial_deposition_date 2008-11-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fairlie, W.D.' 1 'Lee, E.F.' 2 'Smith, B.J.' 3 'Czabotar, P.E.' 4 'Colman, P.M.' 5 # _citation.id primary _citation.title 'High-Resolution Structural Characterization of a Helical alpha/beta-Peptide Foldamer Bound to the Anti-Apoptotic Protein Bcl-x(L)' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 48 _citation.page_first 4318 _citation.page_last 4322 _citation.year 2009 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19229915 _citation.pdbx_database_id_DOI 10.1002/anie.200805761 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, E.F.' 1 ? primary 'Sadowsky, J.D.' 2 ? primary 'Smith, B.J.' 3 ? primary 'Czabotar, P.E.' 4 ? primary 'Peterson-Kaufman, K.J.' 5 ? primary 'Colman, P.M.' 6 ? primary 'Gellman, S.H.' 7 ? primary 'Fairlie, W.D.' 8 ? # _cell.entry_id 3FDL _cell.length_a 74.111 _cell.length_b 35.684 _cell.length_c 62.760 _cell.angle_alpha 90.00 _cell.angle_beta 111.54 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FDL _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Apoptosis regulator Bcl-X' 17917.959 1 ? ? 'residue 1-209, Deletion of amino acids 27 to 82' ? 2 polymer syn 'Bcl-2-like protein 11' 3274.691 1 ? ? 'BH3 domain, UNP residues 141-166' ? 3 water nat water 18.015 209 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Bcl-xL, Bcl-2-like 1 protein' 2 'Bcl2-interacting mediator of cell death' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPLGSMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELF RDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER ; ;GPLGSMSQSNRELVVDFLSYKLSQKGYSWSQMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELF RDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER ; A ? 2 'polypeptide(L)' no no DMRPEIWIAQELRRIGDEFNAYYARR DMRPEIWIAQELRRIGDEFNAYYARR B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 MET n 1 7 SER n 1 8 GLN n 1 9 SER n 1 10 ASN n 1 11 ARG n 1 12 GLU n 1 13 LEU n 1 14 VAL n 1 15 VAL n 1 16 ASP n 1 17 PHE n 1 18 LEU n 1 19 SER n 1 20 TYR n 1 21 LYS n 1 22 LEU n 1 23 SER n 1 24 GLN n 1 25 LYS n 1 26 GLY n 1 27 TYR n 1 28 SER n 1 29 TRP n 1 30 SER n 1 31 GLN n 1 32 MET n 1 33 ALA n 1 34 ALA n 1 35 VAL n 1 36 LYS n 1 37 GLN n 1 38 ALA n 1 39 LEU n 1 40 ARG n 1 41 GLU n 1 42 ALA n 1 43 GLY n 1 44 ASP n 1 45 GLU n 1 46 PHE n 1 47 GLU n 1 48 LEU n 1 49 ARG n 1 50 TYR n 1 51 ARG n 1 52 ARG n 1 53 ALA n 1 54 PHE n 1 55 SER n 1 56 ASP n 1 57 LEU n 1 58 THR n 1 59 SER n 1 60 GLN n 1 61 LEU n 1 62 HIS n 1 63 ILE n 1 64 THR n 1 65 PRO n 1 66 GLY n 1 67 THR n 1 68 ALA n 1 69 TYR n 1 70 GLN n 1 71 SER n 1 72 PHE n 1 73 GLU n 1 74 GLN n 1 75 VAL n 1 76 VAL n 1 77 ASN n 1 78 GLU n 1 79 LEU n 1 80 PHE n 1 81 ARG n 1 82 ASP n 1 83 GLY n 1 84 VAL n 1 85 ASN n 1 86 TRP n 1 87 GLY n 1 88 ARG n 1 89 ILE n 1 90 VAL n 1 91 ALA n 1 92 PHE n 1 93 PHE n 1 94 SER n 1 95 PHE n 1 96 GLY n 1 97 GLY n 1 98 ALA n 1 99 LEU n 1 100 CYS n 1 101 VAL n 1 102 GLU n 1 103 SER n 1 104 VAL n 1 105 ASP n 1 106 LYS n 1 107 GLU n 1 108 MET n 1 109 GLN n 1 110 VAL n 1 111 LEU n 1 112 VAL n 1 113 SER n 1 114 ARG n 1 115 ILE n 1 116 ALA n 1 117 ALA n 1 118 TRP n 1 119 MET n 1 120 ALA n 1 121 THR n 1 122 TYR n 1 123 LEU n 1 124 ASN n 1 125 ASP n 1 126 HIS n 1 127 LEU n 1 128 GLU n 1 129 PRO n 1 130 TRP n 1 131 ILE n 1 132 GLN n 1 133 GLU n 1 134 ASN n 1 135 GLY n 1 136 GLY n 1 137 TRP n 1 138 ASP n 1 139 THR n 1 140 PHE n 1 141 VAL n 1 142 GLU n 1 143 LEU n 1 144 TYR n 1 145 GLY n 1 146 ASN n 1 147 ASN n 1 148 ALA n 1 149 ALA n 1 150 ALA n 1 151 GLU n 1 152 SER n 1 153 ARG n 1 154 LYS n 1 155 GLY n 1 156 GLN n 1 157 GLU n 1 158 ARG n 2 1 ASP n 2 2 MET n 2 3 ARG n 2 4 PRO n 2 5 GLU n 2 6 ILE n 2 7 TRP n 2 8 ILE n 2 9 ALA n 2 10 GLN n 2 11 GLU n 2 12 LEU n 2 13 ARG n 2 14 ARG n 2 15 ILE n 2 16 GLY n 2 17 ASP n 2 18 GLU n 2 19 PHE n 2 20 ASN n 2 21 ALA n 2 22 TYR n 2 23 TYR n 2 24 ALA n 2 25 ARG n 2 26 ARG n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? 6 31 Human ? Bcl-x ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21 (DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pGEX-6p3 ? ? 1 2 sample ? 32 158 Human ? Bcl-x ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21 (DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pGEX-6p3 ? ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'Chemically synthesized' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP BCLX_HUMAN Q07817 1 MSQSNRELVVDFLSYKLSQKGYSWSQ 1 ? 2 UNP BCLX_HUMAN Q07817 1 ;MAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVL VSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQER ; 83 ? 3 UNP BIM_HUMAN O43521 2 DMRPEIWIAQELRRIGDEFNAYYARR 141 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FDL A 6 ? 31 ? Q07817 1 ? 26 ? 1 26 2 2 3FDL A 32 ? 158 ? Q07817 83 ? 209 ? 83 209 3 3 3FDL B 1 ? 26 ? O43521 141 ? 166 ? 83 108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FDL GLY A 1 ? UNP Q07817 ? ? 'expression tag' -5 1 1 3FDL PRO A 2 ? UNP Q07817 ? ? 'expression tag' -4 2 1 3FDL LEU A 3 ? UNP Q07817 ? ? 'expression tag' -3 3 1 3FDL GLY A 4 ? UNP Q07817 ? ? 'expression tag' -2 4 1 3FDL SER A 5 ? UNP Q07817 ? ? 'expression tag' -1 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FDL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.82 _exptl_crystal.density_percent_sol 32.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '1M Sodium citrate, 0.1M Sodium cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2007-12-03 _diffrn_detector.details 'AXCO capillary optic' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Ni filter' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3FDL _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 1.78 _reflns.number_obs 14264 _reflns.number_all 14858 _reflns.percent_possible_obs 96.0 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.78 _reflns_shell.d_res_low 1.84 _reflns_shell.percent_possible_all 94.9 _reflns_shell.Rmerge_I_obs 0.163 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 11.1 _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1463 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3FDL _refine.ls_number_reflns_obs 13529 _refine.ls_number_reflns_all 14140 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.19 _refine.ls_d_res_high 1.78 _refine.ls_percent_reflns_obs 95.68 _refine.ls_R_factor_obs 0.16295 _refine.ls_R_factor_all 0.16295 _refine.ls_R_factor_R_work 0.16045 _refine.ls_R_factor_R_free 0.20769 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 728 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.952 _refine.B_iso_mean 16.516 _refine.aniso_B[1][1] -0.55 _refine.aniso_B[2][2] -0.49 _refine.aniso_B[3][3] 0.74 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.41 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 2P1L without Beclin BH3 ligand' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.139 _refine.pdbx_overall_ESU_R_Free 0.131 _refine.overall_SU_ML 0.084 _refine.overall_SU_B 2.610 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1385 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 209 _refine_hist.number_atoms_total 1594 _refine_hist.d_res_high 1.78 _refine_hist.d_res_low 29.19 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 1421 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.452 1.924 ? 1923 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.752 5.000 ? 170 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.935 23.377 ? 77 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.603 15.000 ? 236 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.680 15.000 ? 13 'X-RAY DIFFRACTION' ? r_chiral_restr 0.265 0.200 ? 197 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.008 0.020 ? 1115 'X-RAY DIFFRACTION' ? r_mcbond_it 1.186 2.000 ? 842 'X-RAY DIFFRACTION' ? r_mcangle_it 2.055 3.000 ? 1347 'X-RAY DIFFRACTION' ? r_scbond_it 3.339 4.000 ? 579 'X-RAY DIFFRACTION' ? r_scangle_it 4.920 6.000 ? 576 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.779 _refine_ls_shell.d_res_low 1.825 _refine_ls_shell.number_reflns_R_work 946 _refine_ls_shell.R_factor_R_work 0.239 _refine_ls_shell.percent_reflns_obs 91.54 _refine_ls_shell.R_factor_R_free 0.300 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3FDL _struct.title 'Bim BH3 peptide in complex with Bcl-xL' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FDL _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text ;helical bundle, peptide-protein complex, apoptosis, Alternative splicing, Membrane, Mitochondrion, Nucleus, Transmembrane, Phosphoprotein ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? LYS A 25 ? GLY A -5 LYS A 20 1 ? 25 HELX_P HELX_P2 2 SER A 30 ? TYR A 50 ? SER A 25 TYR A 101 1 ? 21 HELX_P HELX_P3 3 TYR A 50 ? GLN A 60 ? TYR A 101 GLN A 111 1 ? 11 HELX_P HELX_P4 4 THR A 67 ? PHE A 80 ? THR A 118 PHE A 131 1 ? 14 HELX_P HELX_P5 5 ASN A 85 ? LYS A 106 ? ASN A 136 LYS A 157 1 ? 22 HELX_P HELX_P6 6 VAL A 110 ? HIS A 126 ? VAL A 161 HIS A 177 1 ? 17 HELX_P HELX_P7 7 LEU A 127 ? ASN A 134 ? LEU A 178 ASN A 185 1 ? 8 HELX_P HELX_P8 8 GLY A 135 ? LEU A 143 ? GLY A 186 LEU A 194 1 ? 9 HELX_P HELX_P9 9 PRO B 4 ? ALA B 24 ? PRO B 86 ALA B 106 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 3FDL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FDL _atom_sites.fract_transf_matrix[1][1] 0.013493 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005327 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028024 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017130 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -5 -5 GLY GLY A . n A 1 2 PRO 2 -4 -4 PRO PRO A . n A 1 3 LEU 3 -3 -3 LEU LEU A . n A 1 4 GLY 4 -2 -2 GLY GLY A . n A 1 5 SER 5 -1 -1 SER SER A . n A 1 6 MET 6 1 1 MET MET A . n A 1 7 SER 7 2 2 SER SER A . n A 1 8 GLN 8 3 3 GLN GLN A . n A 1 9 SER 9 4 4 SER SER A . n A 1 10 ASN 10 5 5 ASN ASN A . n A 1 11 ARG 11 6 6 ARG ARG A . n A 1 12 GLU 12 7 7 GLU GLU A . n A 1 13 LEU 13 8 8 LEU LEU A . n A 1 14 VAL 14 9 9 VAL VAL A . n A 1 15 VAL 15 10 10 VAL VAL A . n A 1 16 ASP 16 11 11 ASP ASP A . n A 1 17 PHE 17 12 12 PHE PHE A . n A 1 18 LEU 18 13 13 LEU LEU A . n A 1 19 SER 19 14 14 SER SER A . n A 1 20 TYR 20 15 15 TYR TYR A . n A 1 21 LYS 21 16 16 LYS LYS A . n A 1 22 LEU 22 17 17 LEU LEU A . n A 1 23 SER 23 18 18 SER SER A . n A 1 24 GLN 24 19 19 GLN GLN A . n A 1 25 LYS 25 20 20 LYS LYS A . n A 1 26 GLY 26 21 21 GLY GLY A . n A 1 27 TYR 27 22 22 TYR TYR A . n A 1 28 SER 28 23 23 SER SER A . n A 1 29 TRP 29 24 24 TRP TRP A . n A 1 30 SER 30 25 25 SER SER A . n A 1 31 GLN 31 26 26 GLN GLN A . n A 1 32 MET 32 83 83 MET MET A . n A 1 33 ALA 33 84 84 ALA ALA A . n A 1 34 ALA 34 85 85 ALA ALA A . n A 1 35 VAL 35 86 86 VAL VAL A . n A 1 36 LYS 36 87 87 LYS LYS A . n A 1 37 GLN 37 88 88 GLN GLN A . n A 1 38 ALA 38 89 89 ALA ALA A . n A 1 39 LEU 39 90 90 LEU LEU A . n A 1 40 ARG 40 91 91 ARG ARG A . n A 1 41 GLU 41 92 92 GLU GLU A . n A 1 42 ALA 42 93 93 ALA ALA A . n A 1 43 GLY 43 94 94 GLY GLY A . n A 1 44 ASP 44 95 95 ASP ASP A . n A 1 45 GLU 45 96 96 GLU GLU A . n A 1 46 PHE 46 97 97 PHE PHE A . n A 1 47 GLU 47 98 98 GLU GLU A . n A 1 48 LEU 48 99 99 LEU LEU A . n A 1 49 ARG 49 100 100 ARG ARG A . n A 1 50 TYR 50 101 101 TYR TYR A . n A 1 51 ARG 51 102 102 ARG ARG A . n A 1 52 ARG 52 103 103 ARG ARG A . n A 1 53 ALA 53 104 104 ALA ALA A . n A 1 54 PHE 54 105 105 PHE PHE A . n A 1 55 SER 55 106 106 SER SER A . n A 1 56 ASP 56 107 107 ASP ASP A . n A 1 57 LEU 57 108 108 LEU LEU A . n A 1 58 THR 58 109 109 THR THR A . n A 1 59 SER 59 110 110 SER SER A . n A 1 60 GLN 60 111 111 GLN GLN A . n A 1 61 LEU 61 112 112 LEU LEU A . n A 1 62 HIS 62 113 113 HIS HIS A . n A 1 63 ILE 63 114 114 ILE ILE A . n A 1 64 THR 64 115 115 THR THR A . n A 1 65 PRO 65 116 116 PRO PRO A . n A 1 66 GLY 66 117 117 GLY GLY A . n A 1 67 THR 67 118 118 THR THR A . n A 1 68 ALA 68 119 119 ALA ALA A . n A 1 69 TYR 69 120 120 TYR TYR A . n A 1 70 GLN 70 121 121 GLN GLN A . n A 1 71 SER 71 122 122 SER SER A . n A 1 72 PHE 72 123 123 PHE PHE A . n A 1 73 GLU 73 124 124 GLU GLU A . n A 1 74 GLN 74 125 125 GLN GLN A . n A 1 75 VAL 75 126 126 VAL VAL A . n A 1 76 VAL 76 127 127 VAL VAL A . n A 1 77 ASN 77 128 128 ASN ASN A . n A 1 78 GLU 78 129 129 GLU GLU A . n A 1 79 LEU 79 130 130 LEU LEU A . n A 1 80 PHE 80 131 131 PHE PHE A . n A 1 81 ARG 81 132 132 ARG ARG A . n A 1 82 ASP 82 133 133 ASP ASP A . n A 1 83 GLY 83 134 134 GLY GLY A . n A 1 84 VAL 84 135 135 VAL VAL A . n A 1 85 ASN 85 136 136 ASN ASN A . n A 1 86 TRP 86 137 137 TRP TRP A . n A 1 87 GLY 87 138 138 GLY GLY A . n A 1 88 ARG 88 139 139 ARG ARG A . n A 1 89 ILE 89 140 140 ILE ILE A . n A 1 90 VAL 90 141 141 VAL VAL A . n A 1 91 ALA 91 142 142 ALA ALA A . n A 1 92 PHE 92 143 143 PHE PHE A . n A 1 93 PHE 93 144 144 PHE PHE A . n A 1 94 SER 94 145 145 SER SER A . n A 1 95 PHE 95 146 146 PHE PHE A . n A 1 96 GLY 96 147 147 GLY GLY A . n A 1 97 GLY 97 148 148 GLY GLY A . n A 1 98 ALA 98 149 149 ALA ALA A . n A 1 99 LEU 99 150 150 LEU LEU A . n A 1 100 CYS 100 151 151 CYS CYS A . n A 1 101 VAL 101 152 152 VAL VAL A . n A 1 102 GLU 102 153 153 GLU GLU A . n A 1 103 SER 103 154 154 SER SER A . n A 1 104 VAL 104 155 155 VAL VAL A . n A 1 105 ASP 105 156 156 ASP ASP A . n A 1 106 LYS 106 157 157 LYS LYS A . n A 1 107 GLU 107 158 158 GLU GLU A . n A 1 108 MET 108 159 159 MET MET A . n A 1 109 GLN 109 160 160 GLN GLN A . n A 1 110 VAL 110 161 161 VAL VAL A . n A 1 111 LEU 111 162 162 LEU LEU A . n A 1 112 VAL 112 163 163 VAL VAL A . n A 1 113 SER 113 164 164 SER SER A . n A 1 114 ARG 114 165 165 ARG ARG A . n A 1 115 ILE 115 166 166 ILE ILE A . n A 1 116 ALA 116 167 167 ALA ALA A . n A 1 117 ALA 117 168 168 ALA ALA A . n A 1 118 TRP 118 169 169 TRP TRP A . n A 1 119 MET 119 170 170 MET MET A . n A 1 120 ALA 120 171 171 ALA ALA A . n A 1 121 THR 121 172 172 THR THR A . n A 1 122 TYR 122 173 173 TYR TYR A . n A 1 123 LEU 123 174 174 LEU LEU A . n A 1 124 ASN 124 175 175 ASN ASN A . n A 1 125 ASP 125 176 176 ASP ASP A . n A 1 126 HIS 126 177 177 HIS HIS A . n A 1 127 LEU 127 178 178 LEU LEU A . n A 1 128 GLU 128 179 179 GLU GLU A . n A 1 129 PRO 129 180 180 PRO PRO A . n A 1 130 TRP 130 181 181 TRP TRP A . n A 1 131 ILE 131 182 182 ILE ILE A . n A 1 132 GLN 132 183 183 GLN GLN A . n A 1 133 GLU 133 184 184 GLU GLU A . n A 1 134 ASN 134 185 185 ASN ASN A . n A 1 135 GLY 135 186 186 GLY GLY A . n A 1 136 GLY 136 187 187 GLY GLY A . n A 1 137 TRP 137 188 188 TRP TRP A . n A 1 138 ASP 138 189 189 ASP ASP A . n A 1 139 THR 139 190 190 THR THR A . n A 1 140 PHE 140 191 191 PHE PHE A . n A 1 141 VAL 141 192 192 VAL VAL A . n A 1 142 GLU 142 193 193 GLU GLU A . n A 1 143 LEU 143 194 194 LEU LEU A . n A 1 144 TYR 144 195 ? ? ? A . n A 1 145 GLY 145 196 ? ? ? A . n A 1 146 ASN 146 197 ? ? ? A . n A 1 147 ASN 147 198 ? ? ? A . n A 1 148 ALA 148 199 ? ? ? A . n A 1 149 ALA 149 200 ? ? ? A . n A 1 150 ALA 150 201 ? ? ? A . n A 1 151 GLU 151 202 ? ? ? A . n A 1 152 SER 152 203 ? ? ? A . n A 1 153 ARG 153 204 ? ? ? A . n A 1 154 LYS 154 205 ? ? ? A . n A 1 155 GLY 155 206 ? ? ? A . n A 1 156 GLN 156 207 ? ? ? A . n A 1 157 GLU 157 208 ? ? ? A . n A 1 158 ARG 158 209 ? ? ? A . n B 2 1 ASP 1 83 ? ? ? B . n B 2 2 MET 2 84 84 MET MET B . n B 2 3 ARG 3 85 85 ARG ARG B . n B 2 4 PRO 4 86 86 PRO PRO B . n B 2 5 GLU 5 87 87 GLU GLU B . n B 2 6 ILE 6 88 88 ILE ILE B . n B 2 7 TRP 7 89 89 TRP TRP B . n B 2 8 ILE 8 90 90 ILE ILE B . n B 2 9 ALA 9 91 91 ALA ALA B . n B 2 10 GLN 10 92 92 GLN GLN B . n B 2 11 GLU 11 93 93 GLU GLU B . n B 2 12 LEU 12 94 94 LEU LEU B . n B 2 13 ARG 13 95 95 ARG ARG B . n B 2 14 ARG 14 96 96 ARG ARG B . n B 2 15 ILE 15 97 97 ILE ILE B . n B 2 16 GLY 16 98 98 GLY GLY B . n B 2 17 ASP 17 99 99 ASP ASP B . n B 2 18 GLU 18 100 100 GLU GLU B . n B 2 19 PHE 19 101 101 PHE PHE B . n B 2 20 ASN 20 102 102 ASN ASN B . n B 2 21 ALA 21 103 103 ALA ALA B . n B 2 22 TYR 22 104 104 TYR TYR B . n B 2 23 TYR 23 105 105 TYR TYR B . n B 2 24 ALA 24 106 106 ALA ALA B . n B 2 25 ARG 25 107 107 ARG ARG B . n B 2 26 ARG 26 108 108 ARG ARG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 28 28 HOH HOH A . C 3 HOH 2 29 29 HOH HOH A . C 3 HOH 3 30 30 HOH HOH A . C 3 HOH 4 31 31 HOH HOH A . C 3 HOH 5 32 32 HOH HOH A . C 3 HOH 6 34 34 HOH HOH A . C 3 HOH 7 35 35 HOH HOH A . C 3 HOH 8 36 36 HOH HOH A . C 3 HOH 9 39 39 HOH HOH A . C 3 HOH 10 40 40 HOH HOH A . C 3 HOH 11 44 44 HOH HOH A . C 3 HOH 12 45 45 HOH HOH A . C 3 HOH 13 46 46 HOH HOH A . C 3 HOH 14 47 47 HOH HOH A . C 3 HOH 15 48 48 HOH HOH A . C 3 HOH 16 49 49 HOH HOH A . C 3 HOH 17 50 50 HOH HOH A . C 3 HOH 18 52 52 HOH HOH A . C 3 HOH 19 53 53 HOH HOH A . C 3 HOH 20 54 54 HOH HOH A . C 3 HOH 21 55 55 HOH HOH A . C 3 HOH 22 57 57 HOH HOH A . C 3 HOH 23 58 58 HOH HOH A . C 3 HOH 24 59 59 HOH HOH A . C 3 HOH 25 60 60 HOH HOH A . C 3 HOH 26 62 62 HOH HOH A . C 3 HOH 27 64 64 HOH HOH A . C 3 HOH 28 65 65 HOH HOH A . C 3 HOH 29 66 66 HOH HOH A . C 3 HOH 30 67 67 HOH HOH A . C 3 HOH 31 69 69 HOH HOH A . C 3 HOH 32 70 70 HOH HOH A . C 3 HOH 33 72 72 HOH HOH A . C 3 HOH 34 73 73 HOH HOH A . C 3 HOH 35 74 74 HOH HOH A . C 3 HOH 36 76 76 HOH HOH A . C 3 HOH 37 77 77 HOH HOH A . C 3 HOH 38 78 78 HOH HOH A . C 3 HOH 39 79 79 HOH HOH A . C 3 HOH 40 80 80 HOH HOH A . C 3 HOH 41 81 81 HOH HOH A . C 3 HOH 42 82 82 HOH HOH A . C 3 HOH 43 210 210 HOH HOH A . C 3 HOH 44 211 211 HOH HOH A . C 3 HOH 45 212 212 HOH HOH A . C 3 HOH 46 213 213 HOH HOH A . C 3 HOH 47 214 214 HOH HOH A . C 3 HOH 48 215 215 HOH HOH A . C 3 HOH 49 216 216 HOH HOH A . C 3 HOH 50 217 217 HOH HOH A . C 3 HOH 51 218 218 HOH HOH A . C 3 HOH 52 219 219 HOH HOH A . C 3 HOH 53 220 220 HOH HOH A . C 3 HOH 54 221 221 HOH HOH A . C 3 HOH 55 222 222 HOH HOH A . C 3 HOH 56 223 223 HOH HOH A . C 3 HOH 57 224 224 HOH HOH A . C 3 HOH 58 225 225 HOH HOH A . C 3 HOH 59 226 226 HOH HOH A . C 3 HOH 60 227 227 HOH HOH A . C 3 HOH 61 228 228 HOH HOH A . C 3 HOH 62 229 229 HOH HOH A . C 3 HOH 63 230 230 HOH HOH A . C 3 HOH 64 231 231 HOH HOH A . C 3 HOH 65 232 232 HOH HOH A . C 3 HOH 66 233 233 HOH HOH A . C 3 HOH 67 234 234 HOH HOH A . C 3 HOH 68 235 235 HOH HOH A . C 3 HOH 69 236 236 HOH HOH A . C 3 HOH 70 237 237 HOH HOH A . C 3 HOH 71 238 238 HOH HOH A . C 3 HOH 72 239 239 HOH HOH A . C 3 HOH 73 240 240 HOH HOH A . C 3 HOH 74 241 241 HOH HOH A . C 3 HOH 75 242 242 HOH HOH A . C 3 HOH 76 243 243 HOH HOH A . C 3 HOH 77 244 244 HOH HOH A . C 3 HOH 78 245 245 HOH HOH A . C 3 HOH 79 246 246 HOH HOH A . C 3 HOH 80 247 247 HOH HOH A . C 3 HOH 81 248 248 HOH HOH A . C 3 HOH 82 249 249 HOH HOH A . C 3 HOH 83 250 250 HOH HOH A . C 3 HOH 84 251 251 HOH HOH A . C 3 HOH 85 252 252 HOH HOH A . C 3 HOH 86 253 253 HOH HOH A . C 3 HOH 87 254 254 HOH HOH A . C 3 HOH 88 255 255 HOH HOH A . C 3 HOH 89 256 256 HOH HOH A . C 3 HOH 90 257 257 HOH HOH A . C 3 HOH 91 258 258 HOH HOH A . C 3 HOH 92 259 259 HOH HOH A . C 3 HOH 93 260 260 HOH HOH A . C 3 HOH 94 261 261 HOH HOH A . C 3 HOH 95 262 262 HOH HOH A . C 3 HOH 96 263 263 HOH HOH A . C 3 HOH 97 264 264 HOH HOH A . C 3 HOH 98 265 265 HOH HOH A . C 3 HOH 99 266 266 HOH HOH A . C 3 HOH 100 267 267 HOH HOH A . C 3 HOH 101 268 268 HOH HOH A . C 3 HOH 102 269 269 HOH HOH A . C 3 HOH 103 270 270 HOH HOH A . C 3 HOH 104 271 271 HOH HOH A . C 3 HOH 105 272 272 HOH HOH A . C 3 HOH 106 273 273 HOH HOH A . C 3 HOH 107 274 274 HOH HOH A . C 3 HOH 108 275 275 HOH HOH A . C 3 HOH 109 276 276 HOH HOH A . C 3 HOH 110 277 277 HOH HOH A . C 3 HOH 111 278 278 HOH HOH A . C 3 HOH 112 279 279 HOH HOH A . C 3 HOH 113 280 280 HOH HOH A . C 3 HOH 114 281 281 HOH HOH A . C 3 HOH 115 282 282 HOH HOH A . C 3 HOH 116 283 283 HOH HOH A . C 3 HOH 117 284 284 HOH HOH A . C 3 HOH 118 285 285 HOH HOH A . C 3 HOH 119 286 286 HOH HOH A . C 3 HOH 120 287 287 HOH HOH A . C 3 HOH 121 288 288 HOH HOH A . C 3 HOH 122 289 289 HOH HOH A . C 3 HOH 123 290 290 HOH HOH A . C 3 HOH 124 291 291 HOH HOH A . C 3 HOH 125 292 292 HOH HOH A . C 3 HOH 126 293 293 HOH HOH A . C 3 HOH 127 294 294 HOH HOH A . C 3 HOH 128 295 295 HOH HOH A . C 3 HOH 129 296 296 HOH HOH A . C 3 HOH 130 297 297 HOH HOH A . C 3 HOH 131 298 298 HOH HOH A . C 3 HOH 132 299 299 HOH HOH A . C 3 HOH 133 300 300 HOH HOH A . C 3 HOH 134 301 301 HOH HOH A . C 3 HOH 135 302 302 HOH HOH A . C 3 HOH 136 303 303 HOH HOH A . C 3 HOH 137 304 304 HOH HOH A . C 3 HOH 138 305 305 HOH HOH A . C 3 HOH 139 306 306 HOH HOH A . C 3 HOH 140 307 307 HOH HOH A . C 3 HOH 141 308 308 HOH HOH A . C 3 HOH 142 309 309 HOH HOH A . C 3 HOH 143 310 310 HOH HOH A . C 3 HOH 144 311 311 HOH HOH A . C 3 HOH 145 312 312 HOH HOH A . C 3 HOH 146 313 313 HOH HOH A . C 3 HOH 147 314 314 HOH HOH A . C 3 HOH 148 315 315 HOH HOH A . C 3 HOH 149 316 316 HOH HOH A . C 3 HOH 150 317 317 HOH HOH A . C 3 HOH 151 318 318 HOH HOH A . C 3 HOH 152 319 319 HOH HOH A . C 3 HOH 153 320 320 HOH HOH A . C 3 HOH 154 322 322 HOH HOH A . C 3 HOH 155 323 323 HOH HOH A . C 3 HOH 156 324 324 HOH HOH A . C 3 HOH 157 325 325 HOH HOH A . C 3 HOH 158 326 326 HOH HOH A . C 3 HOH 159 327 327 HOH HOH A . C 3 HOH 160 328 328 HOH HOH A . C 3 HOH 161 329 329 HOH HOH A . C 3 HOH 162 330 330 HOH HOH A . C 3 HOH 163 331 331 HOH HOH A . C 3 HOH 164 332 332 HOH HOH A . C 3 HOH 165 333 333 HOH HOH A . C 3 HOH 166 334 334 HOH HOH A . C 3 HOH 167 335 335 HOH HOH A . C 3 HOH 168 336 336 HOH HOH A . C 3 HOH 169 337 337 HOH HOH A . C 3 HOH 170 338 338 HOH HOH A . C 3 HOH 171 339 339 HOH HOH A . C 3 HOH 172 340 340 HOH HOH A . C 3 HOH 173 341 341 HOH HOH A . C 3 HOH 174 342 342 HOH HOH A . C 3 HOH 175 343 343 HOH HOH A . C 3 HOH 176 344 344 HOH HOH A . D 3 HOH 1 1 1 HOH HOH B . D 3 HOH 2 2 2 HOH HOH B . D 3 HOH 3 6 6 HOH HOH B . D 3 HOH 4 9 9 HOH HOH B . D 3 HOH 5 16 16 HOH HOH B . D 3 HOH 6 17 17 HOH HOH B . D 3 HOH 7 19 19 HOH HOH B . D 3 HOH 8 26 26 HOH HOH B . D 3 HOH 9 33 33 HOH HOH B . D 3 HOH 10 56 56 HOH HOH B . D 3 HOH 11 61 61 HOH HOH B . D 3 HOH 12 71 71 HOH HOH B . D 3 HOH 13 109 109 HOH HOH B . D 3 HOH 14 110 110 HOH HOH B . D 3 HOH 15 113 113 HOH HOH B . D 3 HOH 16 120 120 HOH HOH B . D 3 HOH 17 135 135 HOH HOH B . D 3 HOH 18 137 137 HOH HOH B . D 3 HOH 19 143 143 HOH HOH B . D 3 HOH 20 182 182 HOH HOH B . D 3 HOH 21 184 184 HOH HOH B . D 3 HOH 22 187 187 HOH HOH B . D 3 HOH 23 188 188 HOH HOH B . D 3 HOH 24 196 196 HOH HOH B . D 3 HOH 25 199 199 HOH HOH B . D 3 HOH 26 200 200 HOH HOH B . D 3 HOH 27 201 201 HOH HOH B . D 3 HOH 28 214 214 HOH HOH B . D 3 HOH 29 217 217 HOH HOH B . D 3 HOH 30 232 232 HOH HOH B . D 3 HOH 31 233 233 HOH HOH B . D 3 HOH 32 263 263 HOH HOH B . D 3 HOH 33 321 321 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2 A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2170 ? 1 MORE -17 ? 1 'SSA (A^2)' 10560 ? 2 'ABSA (A^2)' 8540 ? 2 MORE -66 ? 2 'SSA (A^2)' 16910 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -23.0423773895 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 58.3769341798 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-03-10 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-08-09 4 'Structure model' 1 3 2017-08-16 5 'Structure model' 1 4 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Source and taxonomy' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' entity_src_gen 2 3 'Structure model' software 3 4 'Structure model' pdbx_entity_src_syn 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_initial_refinement_model 8 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 2 4 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.4.0067 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3FDL _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;BCL-XL WITH AMINO ACIDS 27 TO 82 DELETED AND A C-TERMINAL TRUNCATION OF THE LAST 24 RESIDUES THE NUMBERING OF THE PROTEIN IS NON-SEQUENTIAL. THE NUMBER ZERO IS SKIPPED. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 227 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 241 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 254 ? ? 1_555 O A HOH 255 ? ? 4_446 2.10 2 1 OE1 A GLN 88 ? B 1_555 O A HOH 243 ? ? 2_556 2.10 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE B ARG 108 ? ? CZ B ARG 108 ? ? NH1 B ARG 108 ? ? 125.09 120.30 4.79 0.50 N 2 1 NE B ARG 108 ? ? CZ B ARG 108 ? ? NH2 B ARG 108 ? ? 116.18 120.30 -4.12 0.50 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TYR 195 ? A TYR 144 2 1 Y 1 A GLY 196 ? A GLY 145 3 1 Y 1 A ASN 197 ? A ASN 146 4 1 Y 1 A ASN 198 ? A ASN 147 5 1 Y 1 A ALA 199 ? A ALA 148 6 1 Y 1 A ALA 200 ? A ALA 149 7 1 Y 1 A ALA 201 ? A ALA 150 8 1 Y 1 A GLU 202 ? A GLU 151 9 1 Y 1 A SER 203 ? A SER 152 10 1 Y 1 A ARG 204 ? A ARG 153 11 1 Y 1 A LYS 205 ? A LYS 154 12 1 Y 1 A GLY 206 ? A GLY 155 13 1 Y 1 A GLN 207 ? A GLN 156 14 1 Y 1 A GLU 208 ? A GLU 157 15 1 Y 1 A ARG 209 ? A ARG 158 16 1 Y 1 B ASP 83 ? B ASP 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2P1L _pdbx_initial_refinement_model.details 'PDB ENTRY 2P1L without Beclin BH3 ligand' #