HEADER OXIDOREDUCTASE 27-NOV-08 3FE5 TITLE CRYSTAL STRUCTURE OF 3-HYDROXYANTHRANILATE 3,4-DIOXYGENASE FROM BOVINE TITLE 2 KIDNEY COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXYANTHRANILATE 3,4-DIOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3-HYDROXYANTHRANILIC ACID DIOXYGENASE, 3-HYDROXYANTHRANILATE COMPND 5 OXYGENASE, 3-HAO; COMPND 6 EC: 1.13.11.6 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS CUPIN, 3HAO, QUINOLINIC ACID, CYTOPLASM, DIOXYGENASE, IRON, METAL- KEYWDS 2 BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.DILOVIC,F.GLIUBICH,G.MALPELI,G.ZANOTTI,D.MATKOVIC-CALOGOVIC REVDAT 4 15-NOV-23 3FE5 1 REMARK REVDAT 3 01-NOV-23 3FE5 1 REMARK LINK REVDAT 2 01-NOV-17 3FE5 1 REMARK REVDAT 1 09-JUN-09 3FE5 0 JRNL AUTH I.DILOVIC,F.GLIUBICH,G.MALPELI,G.ZANOTTI, JRNL AUTH 2 D.MATKOVIC-CALOGOVIC JRNL TITL CRYSTAL STRUCTURE OF BOVINE 3-HYDROXYANTHRANILATE JRNL TITL 2 3,4-DIOXYGENASE. JRNL REF BIOPOLYMERS 2009 JRNL REFN ESSN 1079-0282 JRNL PMID 19226621 JRNL DOI 10.1002/BIP.21167 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.ZHANG,K.L.COLABROY,T.P.BEGLEY,S.E.EALICK REMARK 1 TITL STRUCTURAL STUDIES ON 3-HYDROXYANTHRANILATE-3,4-DIOXYGENASE: REMARK 1 TITL 2 THE CATALYTIC MECHANISM OF A COMPLEX OXIDATION INVOLVED IN REMARK 1 TITL 3 NAD BIOSYNTHESIS. REMARK 1 REF BIOCHEMISTRY V. 44 7632 2005 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 15909978 REMARK 1 DOI 10.1021/BI047353L REMARK 1 REFERENCE 2 REMARK 1 AUTH X.LI,M.GUO,J.FAN,W.TANG,D.WANG,H.GE,H.RONG,M.TENG,L.NIU, REMARK 1 AUTH 2 Q.LIU,Q.HAO REMARK 1 TITL CRYSTAL STRUCTURE OF 3-HYDROXYANTHRANILIC ACID REMARK 1 TITL 2 3,4-DIOXYGENASE FROM SACCHAROMYCES CEREVISIAE: A SPECIAL REMARK 1 TITL 3 SUBGROUP OF THE TYPE III EXTRADIOL DIOXYGENASES. REMARK 1 REF PROTEIN SCI. V. 15 761 2006 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 16522801 REMARK 1 DOI 10.1110/PS.051967906 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 8486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 399 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 183 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 28.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 7 REMARK 3 BIN FREE R VALUE : 0.4970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2270 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : -0.24000 REMARK 3 B23 (A**2) : 0.05000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.351 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.252 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.378 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.870 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2327 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3150 ; 1.664 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ;17.724 ; 5.208 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;35.183 ;23.482 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 405 ;18.981 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.289 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1782 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 854 ; 0.259 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1517 ; 0.333 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 172 ; 0.207 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.038 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.251 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.291 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1438 ; 1.253 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2276 ; 2.088 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 999 ; 1.199 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 874 ; 1.940 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FE5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 180 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 35.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.04100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2QNK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (NH4)2SO4, TRIS-HCL, 40MM MGCL2, REMARK 280 3% MPD, PH 8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 285 REMARK 465 GLY A 286 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 41 O HOH A 337 1.96 REMARK 500 CB ILE A 104 O HOH A 289 2.10 REMARK 500 O THR A 124 O HOH A 307 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 212 C VAL A 213 N -0.216 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 3 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 PRO A 4 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 PRO A 4 C - N - CD ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 29 44.38 -146.48 REMARK 500 LYS A 30 -118.99 -98.27 REMARK 500 ASN A 41 116.08 -162.57 REMARK 500 ASN A 98 44.50 72.45 REMARK 500 THR A 139 -14.08 -155.67 REMARK 500 SER A 150 43.42 -101.44 REMARK 500 HIS A 190 12.90 -140.97 REMARK 500 LEU A 250 122.49 -31.11 REMARK 500 ALA A 258 126.47 -32.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 2 ARG A 3 -38.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 1 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 ND1 REMARK 620 2 GLU A 53 OE1 157.3 REMARK 620 3 GLU A 53 OE2 101.6 56.1 REMARK 620 4 HIS A 91 NE2 104.5 77.2 99.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QNK RELATED DB: PDB REMARK 900 3HAO FROM HUMAN REMARK 900 RELATED ID: 1ZVF RELATED DB: PDB REMARK 900 3HAO FROM YEAST REMARK 900 RELATED ID: 1YFY RELATED DB: PDB REMARK 900 3HAO FROM RALSTONIA METALLIDURANS DBREF 3FE5 A 2 286 UNP Q0VCA8 3HAO_BOVIN 2 286 SEQRES 1 A 285 GLU ARG PRO VAL ARG VAL LYS ALA TRP VAL GLU GLU ASN SEQRES 2 A 285 ARG GLY SER PHE LEU PRO PRO VAL CSO ASN LYS LEU LEU SEQRES 3 A 285 HIS GLN LYS GLN LEU LYS ILE MET PHE VAL GLY GLY PRO SEQRES 4 A 285 ASN THR ARG LYS ASP TYR HIS ILE GLU GLU GLY GLU GLU SEQRES 5 A 285 VAL PHE TYR GLN LEU GLU GLY ASP MET LEU LEU ARG VAL SEQRES 6 A 285 LEU GLU ARG GLY LYS HIS ARG ASP VAL VAL ILE ARG GLN SEQRES 7 A 285 GLY GLU ILE PHE LEU LEU PRO ALA GLY VAL PRO HIS SER SEQRES 8 A 285 PRO GLN ARG PHE ALA ASN THR VAL GLY LEU VAL ILE GLU SEQRES 9 A 285 ARG ARG ARG LEU LYS THR GLU LEU ASP GLY LEU ARG TYR SEQRES 10 A 285 TYR VAL GLY ASP THR THR ASP VAL LEU PHE GLU LYS TRP SEQRES 11 A 285 PHE TYR CSO GLU ASP LEU GLY THR GLN LEU ALA PRO ILE SEQRES 12 A 285 ILE GLN GLU PHE PHE SER SER GLU GLN TYR ARG THR GLY SEQRES 13 A 285 LYS PRO ASN PRO ASP GLN LEU LEU LYS GLU PRO PRO PHE SEQRES 14 A 285 PRO LEU SER THR ARG SER VAL MET GLU PRO MET CSO LEU SEQRES 15 A 285 GLU ALA TRP LEU ASP GLY HIS ARG LYS GLU LEU GLN ALA SEQRES 16 A 285 GLY THR PRO LEU SER LEU PHE GLY ASP THR TYR GLU SER SEQRES 17 A 285 GLN VAL MET VAL HIS GLY GLN GLY SER SER GLU GLY LEU SEQRES 18 A 285 ARG ARG ASP VAL ASP VAL TRP LEU TRP GLN LEU GLU GLY SEQRES 19 A 285 SER SER VAL VAL THR MET GLU GLY GLN ARG LEU SER LEU SEQRES 20 A 285 THR LEU ASP ASP SER LEU LEU VAL PRO ALA GLY THR LEU SEQRES 21 A 285 TYR GLY TRP GLU ARG GLY GLN GLY SER VAL ALA LEU SER SEQRES 22 A 285 VAL THR GLN ASP PRO ALA CYS LYS LYS SER LEU GLY MODRES 3FE5 CSO A 23 CYS S-HYDROXYCYSTEINE MODRES 3FE5 CSO A 134 CYS S-HYDROXYCYSTEINE MODRES 3FE5 CSO A 182 CYS S-HYDROXYCYSTEINE HET CSO A 23 7 HET CSO A 134 7 HET CSO A 182 7 HET FE A 1 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM FE FE (III) ION FORMUL 1 CSO 3(C3 H7 N O3 S) FORMUL 2 FE FE 3+ FORMUL 3 HOH *55(H2 O) HELIX 1 1 VAL A 7 ARG A 15 1 9 HELIX 2 2 GLY A 16 PHE A 18 5 3 HELIX 3 3 GLN A 140 SER A 150 1 11 HELIX 4 4 SER A 151 GLY A 157 1 7 HELIX 5 5 ASN A 160 LEU A 164 5 5 HELIX 6 6 LEU A 183 GLY A 189 1 7 HELIX 7 7 HIS A 190 GLY A 197 1 8 HELIX 8 8 PRO A 279 LYS A 282 5 4 SHEET 1 A 5 VAL A 5 ARG A 6 0 SHEET 2 A 5 ASP A 252 VAL A 256 -1 O SER A 253 N VAL A 5 SHEET 3 A 5 VAL A 228 GLU A 234 -1 N GLN A 232 O ASP A 252 SHEET 4 A 5 VAL A 271 GLN A 277 -1 O VAL A 275 N TRP A 229 SHEET 5 A 5 SER A 209 HIS A 214 -1 N HIS A 214 O ALA A 272 SHEET 1 B 6 ASN A 24 GLN A 29 0 SHEET 2 B 6 LEU A 32 GLY A 38 -1 O ILE A 34 N LEU A 27 SHEET 3 B 6 VAL A 100 ARG A 106 -1 O GLU A 105 N LYS A 33 SHEET 4 B 6 GLU A 53 GLU A 59 -1 N TYR A 56 O LEU A 102 SHEET 5 B 6 GLU A 81 LEU A 85 -1 O LEU A 85 N GLU A 53 SHEET 6 B 6 MET A 181 CSO A 182 -1 O MET A 181 N ILE A 82 SHEET 1 C 3 TYR A 46 ILE A 48 0 SHEET 2 C 3 ASP A 114 TYR A 119 -1 O ARG A 117 N TYR A 46 SHEET 3 C 3 VAL A 126 PHE A 132 -1 O LEU A 127 N TYR A 118 SHEET 1 D 3 LYS A 71 ILE A 77 0 SHEET 2 D 3 MET A 62 GLU A 68 -1 N VAL A 66 O ARG A 73 SHEET 3 D 3 HIS A 91 ARG A 95 -1 O GLN A 94 N LEU A 63 SHEET 1 E 4 GLY A 217 ARG A 223 0 SHEET 2 E 4 LEU A 261 ARG A 266 -1 O ARG A 266 N GLY A 217 SHEET 3 E 4 SER A 237 MET A 241 -1 N THR A 240 O GLY A 263 SHEET 4 E 4 ARG A 245 LEU A 248 -1 O LEU A 248 N SER A 237 LINK C VAL A 22 N CSO A 23 1555 1555 1.35 LINK C CSO A 23 N ASN A 24 1555 1555 1.33 LINK C TYR A 133 N CSO A 134 1555 1555 1.33 LINK C CSO A 134 N GLU A 135 1555 1555 1.33 LINK C MET A 181 N CSO A 182 1555 1555 1.33 LINK C CSO A 182 N LEU A 183 1555 1555 1.35 LINK FE FE A 1 ND1 HIS A 47 1555 1555 2.14 LINK FE FE A 1 OE1 GLU A 53 1555 1555 2.57 LINK FE FE A 1 OE2 GLU A 53 1555 1555 1.91 LINK FE FE A 1 NE2 HIS A 91 1555 1555 1.99 CISPEP 1 ARG A 3 PRO A 4 0 6.73 CISPEP 2 PRO A 20 PRO A 21 0 11.56 CISPEP 3 GLY A 39 PRO A 40 0 3.42 SITE 1 AC1 4 HIS A 47 GLU A 53 HIS A 91 HOH A 287 CRYST1 40.250 42.520 46.480 91.70 113.30 107.70 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024845 0.007929 0.012239 0.00000 SCALE2 0.000000 0.024687 0.004294 0.00000 SCALE3 0.000000 0.000000 0.023777 0.00000