HEADER ATP BINDING PROTEIN 01-DEC-08 3FES TITLE CRYSTAL STRUCTURE OF THE ATP-DEPENDENT CLP PROTEASE CLPC FROM TITLE 2 CLOSTRIDIUM DIFFICILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT CLP ENDOPEPTIDASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 2-143, ATP-BINDING; COMPND 5 SYNONYM: ATP-DEPENDENT CLP PROTEASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 GENE: CD0026, CLPC, MECB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS ALPHA-HELICAL BUNDLES, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, ATP- KEYWDS 3 BINDING, CHAPERONE, NUCLEOTIDE-BINDING, PROTEASE, ATP BINDING KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,H.LI,G.COBB,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 06-NOV-24 3FES 1 REMARK REVDAT 3 27-DEC-23 3FES 1 REMARK LINK REVDAT 2 13-JUL-11 3FES 1 VERSN REVDAT 1 16-DEC-08 3FES 0 JRNL AUTH Y.KIM,C.TESAR,H.LI,G.COBB,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF THE ATP-DEPENDENT CLP PROTEASE CLPC JRNL TITL 2 FROM CLOSTRIDIUM DIFFICILE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 56400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3015 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 226 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4354 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 32.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.84000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.46000 REMARK 3 B12 (A**2) : 1.21000 REMARK 3 B13 (A**2) : 0.65000 REMARK 3 B23 (A**2) : -1.40000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.491 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4620 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6196 ; 1.517 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 592 ; 5.302 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;39.707 ;25.517 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 897 ;15.171 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.005 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 702 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3359 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2866 ; 0.921 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4590 ; 1.729 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1754 ; 3.048 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1606 ; 5.104 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2855 56.6507 44.8236 REMARK 3 T TENSOR REMARK 3 T11: 0.0166 T22: 0.1074 REMARK 3 T33: 0.0279 T12: -0.0149 REMARK 3 T13: 0.0111 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.3744 L22: 2.0399 REMARK 3 L33: 2.4382 L12: -0.3025 REMARK 3 L13: -0.2104 L23: 0.6575 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: 0.0360 S13: 0.0277 REMARK 3 S21: -0.0538 S22: -0.0451 S23: -0.0120 REMARK 3 S31: -0.1080 S32: -0.0514 S33: 0.0361 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9191 86.6385 72.5418 REMARK 3 T TENSOR REMARK 3 T11: 0.0086 T22: 0.0314 REMARK 3 T33: 0.0584 T12: -0.0093 REMARK 3 T13: -0.0123 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.3955 L22: 2.4137 REMARK 3 L33: 1.0395 L12: -0.4916 REMARK 3 L13: -0.3515 L23: -0.0691 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: 0.0351 S13: -0.0400 REMARK 3 S21: -0.0782 S22: 0.0016 S23: -0.0339 REMARK 3 S31: 0.0197 S32: -0.0887 S33: 0.0169 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 142 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5663 49.0110 74.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: 0.0636 REMARK 3 T33: 0.0667 T12: 0.0063 REMARK 3 T13: -0.0019 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.9137 L22: 3.6439 REMARK 3 L33: 1.5704 L12: -0.5225 REMARK 3 L13: -0.2376 L23: -0.8750 REMARK 3 S TENSOR REMARK 3 S11: -0.1098 S12: -0.1036 S13: 0.0088 REMARK 3 S21: 0.2999 S22: 0.0892 S23: -0.1236 REMARK 3 S31: -0.1224 S32: 0.0822 S33: 0.0206 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 142 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9791 67.7844 96.5029 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0654 REMARK 3 T33: 0.0333 T12: 0.0059 REMARK 3 T13: 0.0070 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.0519 L22: 1.5594 REMARK 3 L33: 3.8527 L12: -0.4229 REMARK 3 L13: 0.2397 L23: 0.5942 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.0786 S13: -0.1190 REMARK 3 S21: 0.0478 S22: 0.0332 S23: 0.1332 REMARK 3 S31: 0.4625 S32: 0.0495 S33: -0.0164 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FES COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59636 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 34.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M CITRATE PH 5.5, 40% REMARK 280 (V/V) PEG-400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 GLY B 142 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 SER C 74 REMARK 465 GLU C 75 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 39 OE2 GLU C 60 1.93 REMARK 500 OE1 GLN A 85 O HOH A 193 2.18 REMARK 500 NE2 GLN A 113 O HOH A 240 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 131 CG - CD - NE ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG B 131 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 41 -48.04 74.88 REMARK 500 GLU B 41 -47.02 73.71 REMARK 500 GLU C 41 -45.74 66.99 REMARK 500 GLU D 41 -44.73 76.29 REMARK 500 GLU D 72 127.57 -36.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE C 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 144 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 C 145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 D 143 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 144 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC62617.2 RELATED DB: TARGETDB DBREF 3FES A 1 142 UNP Q18CA9 Q18CA9_CLOD6 2 143 DBREF 3FES B 1 142 UNP Q18CA9 Q18CA9_CLOD6 2 143 DBREF 3FES C 1 142 UNP Q18CA9 Q18CA9_CLOD6 2 143 DBREF 3FES D 1 142 UNP Q18CA9 Q18CA9_CLOD6 2 143 SEQADV 3FES SER A -2 UNP Q18CA9 EXPRESSION TAG SEQADV 3FES ASN A -1 UNP Q18CA9 EXPRESSION TAG SEQADV 3FES ALA A 0 UNP Q18CA9 EXPRESSION TAG SEQADV 3FES SER B -2 UNP Q18CA9 EXPRESSION TAG SEQADV 3FES ASN B -1 UNP Q18CA9 EXPRESSION TAG SEQADV 3FES ALA B 0 UNP Q18CA9 EXPRESSION TAG SEQADV 3FES SER C -2 UNP Q18CA9 EXPRESSION TAG SEQADV 3FES ASN C -1 UNP Q18CA9 EXPRESSION TAG SEQADV 3FES ALA C 0 UNP Q18CA9 EXPRESSION TAG SEQADV 3FES SER D -2 UNP Q18CA9 EXPRESSION TAG SEQADV 3FES ASN D -1 UNP Q18CA9 EXPRESSION TAG SEQADV 3FES ALA D 0 UNP Q18CA9 EXPRESSION TAG SEQRES 1 A 145 SER ASN ALA ASN PHE ASN ARG PHE THR GLN ARG ALA LYS SEQRES 2 A 145 LYS ALA ILE ASP LEU ALA PHE GLU SER ALA LYS SER LEU SEQRES 3 A 145 GLY HIS ASN ILE VAL GLY SER GLU HIS ILE LEU LEU GLY SEQRES 4 A 145 LEU LEU ARG GLU GLU GLU GLY ILE ALA ALA LYS VAL LEU SEQRES 5 A 145 SER LYS VAL GLY PHE THR GLU ALA TYR LEU GLU GLY LYS SEQRES 6 A 145 ILE VAL ASP MSE GLU GLY LYS GLY GLU GLU ILE SER GLU SEQRES 7 A 145 ASP ILE VAL LEU SER PRO ARG SER LYS GLN ILE LEU GLU SEQRES 8 A 145 LEU SER GLY MSE PHE ALA ASN LYS LEU LYS THR ASN TYR SEQRES 9 A 145 ILE GLY THR GLU HIS ILE LEU LEU ALA ILE ILE GLN GLU SEQRES 10 A 145 GLY GLU GLY ILE ALA ASN LYS ILE LEU ASN TYR ALA GLY SEQRES 11 A 145 VAL ASN ASP ARG THR LEU ALA GLN LEU THR ILE ASP MSE SEQRES 12 A 145 MSE GLY SEQRES 1 B 145 SER ASN ALA ASN PHE ASN ARG PHE THR GLN ARG ALA LYS SEQRES 2 B 145 LYS ALA ILE ASP LEU ALA PHE GLU SER ALA LYS SER LEU SEQRES 3 B 145 GLY HIS ASN ILE VAL GLY SER GLU HIS ILE LEU LEU GLY SEQRES 4 B 145 LEU LEU ARG GLU GLU GLU GLY ILE ALA ALA LYS VAL LEU SEQRES 5 B 145 SER LYS VAL GLY PHE THR GLU ALA TYR LEU GLU GLY LYS SEQRES 6 B 145 ILE VAL ASP MSE GLU GLY LYS GLY GLU GLU ILE SER GLU SEQRES 7 B 145 ASP ILE VAL LEU SER PRO ARG SER LYS GLN ILE LEU GLU SEQRES 8 B 145 LEU SER GLY MSE PHE ALA ASN LYS LEU LYS THR ASN TYR SEQRES 9 B 145 ILE GLY THR GLU HIS ILE LEU LEU ALA ILE ILE GLN GLU SEQRES 10 B 145 GLY GLU GLY ILE ALA ASN LYS ILE LEU ASN TYR ALA GLY SEQRES 11 B 145 VAL ASN ASP ARG THR LEU ALA GLN LEU THR ILE ASP MSE SEQRES 12 B 145 MSE GLY SEQRES 1 C 145 SER ASN ALA ASN PHE ASN ARG PHE THR GLN ARG ALA LYS SEQRES 2 C 145 LYS ALA ILE ASP LEU ALA PHE GLU SER ALA LYS SER LEU SEQRES 3 C 145 GLY HIS ASN ILE VAL GLY SER GLU HIS ILE LEU LEU GLY SEQRES 4 C 145 LEU LEU ARG GLU GLU GLU GLY ILE ALA ALA LYS VAL LEU SEQRES 5 C 145 SER LYS VAL GLY PHE THR GLU ALA TYR LEU GLU GLY LYS SEQRES 6 C 145 ILE VAL ASP MSE GLU GLY LYS GLY GLU GLU ILE SER GLU SEQRES 7 C 145 ASP ILE VAL LEU SER PRO ARG SER LYS GLN ILE LEU GLU SEQRES 8 C 145 LEU SER GLY MSE PHE ALA ASN LYS LEU LYS THR ASN TYR SEQRES 9 C 145 ILE GLY THR GLU HIS ILE LEU LEU ALA ILE ILE GLN GLU SEQRES 10 C 145 GLY GLU GLY ILE ALA ASN LYS ILE LEU ASN TYR ALA GLY SEQRES 11 C 145 VAL ASN ASP ARG THR LEU ALA GLN LEU THR ILE ASP MSE SEQRES 12 C 145 MSE GLY SEQRES 1 D 145 SER ASN ALA ASN PHE ASN ARG PHE THR GLN ARG ALA LYS SEQRES 2 D 145 LYS ALA ILE ASP LEU ALA PHE GLU SER ALA LYS SER LEU SEQRES 3 D 145 GLY HIS ASN ILE VAL GLY SER GLU HIS ILE LEU LEU GLY SEQRES 4 D 145 LEU LEU ARG GLU GLU GLU GLY ILE ALA ALA LYS VAL LEU SEQRES 5 D 145 SER LYS VAL GLY PHE THR GLU ALA TYR LEU GLU GLY LYS SEQRES 6 D 145 ILE VAL ASP MSE GLU GLY LYS GLY GLU GLU ILE SER GLU SEQRES 7 D 145 ASP ILE VAL LEU SER PRO ARG SER LYS GLN ILE LEU GLU SEQRES 8 D 145 LEU SER GLY MSE PHE ALA ASN LYS LEU LYS THR ASN TYR SEQRES 9 D 145 ILE GLY THR GLU HIS ILE LEU LEU ALA ILE ILE GLN GLU SEQRES 10 D 145 GLY GLU GLY ILE ALA ASN LYS ILE LEU ASN TYR ALA GLY SEQRES 11 D 145 VAL ASN ASP ARG THR LEU ALA GLN LEU THR ILE ASP MSE SEQRES 12 D 145 MSE GLY MODRES 3FES MSE A 66 MET SELENOMETHIONINE MODRES 3FES MSE A 92 MET SELENOMETHIONINE MODRES 3FES MSE A 140 MET SELENOMETHIONINE MODRES 3FES MSE A 141 MET SELENOMETHIONINE MODRES 3FES MSE B 66 MET SELENOMETHIONINE MODRES 3FES MSE B 92 MET SELENOMETHIONINE MODRES 3FES MSE B 140 MET SELENOMETHIONINE MODRES 3FES MSE B 141 MET SELENOMETHIONINE MODRES 3FES MSE C 66 MET SELENOMETHIONINE MODRES 3FES MSE C 92 MET SELENOMETHIONINE MODRES 3FES MSE C 140 MET SELENOMETHIONINE MODRES 3FES MSE C 141 MET SELENOMETHIONINE MODRES 3FES MSE D 66 MET SELENOMETHIONINE MODRES 3FES MSE D 92 MET SELENOMETHIONINE MODRES 3FES MSE D 140 MET SELENOMETHIONINE MODRES 3FES MSE D 141 MET SELENOMETHIONINE HET MSE A 66 8 HET MSE A 92 8 HET MSE A 140 8 HET MSE A 141 8 HET MSE B 66 8 HET MSE B 92 8 HET MSE B 140 8 HET MSE B 141 8 HET MSE C 66 8 HET MSE C 92 8 HET MSE C 140 8 HET MSE C 141 8 HET MSE D 66 8 HET MSE D 92 8 HET MSE D 140 8 HET MSE D 141 8 HET MG A 143 1 HET PG4 B 143 13 HET MG B 144 1 HET EPE C 143 15 HET PG4 C 144 13 HET PG4 C 145 13 HET MG C 146 1 HET PG4 D 143 13 HET MG D 144 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETSYN EPE HEPES FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 MG 4(MG 2+) FORMUL 6 PG4 4(C8 H18 O5) FORMUL 8 EPE C8 H18 N2 O4 S FORMUL 14 HOH *265(H2 O) HELIX 1 1 THR A 6 LEU A 23 1 18 HELIX 2 2 GLY A 29 GLU A 41 1 13 HELIX 3 3 GLY A 43 GLY A 53 1 11 HELIX 4 4 THR A 55 GLY A 68 1 14 HELIX 5 5 SER A 80 LEU A 97 1 18 HELIX 6 6 GLY A 103 GLY A 115 1 13 HELIX 7 7 GLU A 116 GLY A 127 1 12 HELIX 8 8 VAL A 128 MSE A 140 1 13 HELIX 9 9 THR B 6 LEU B 23 1 18 HELIX 10 10 GLY B 29 GLU B 40 1 12 HELIX 11 11 GLY B 43 GLY B 53 1 11 HELIX 12 12 THR B 55 GLY B 68 1 14 HELIX 13 13 SER B 80 LEU B 97 1 18 HELIX 14 14 GLY B 103 GLY B 115 1 13 HELIX 15 15 GLU B 116 ALA B 126 1 11 HELIX 16 16 VAL B 128 MSE B 140 1 13 HELIX 17 17 ASN C 1 PHE C 5 5 5 HELIX 18 18 THR C 6 GLY C 24 1 19 HELIX 19 19 GLY C 29 GLU C 40 1 12 HELIX 20 20 GLY C 43 VAL C 52 1 10 HELIX 21 21 THR C 55 GLY C 68 1 14 HELIX 22 22 SER C 80 LYS C 98 1 19 HELIX 23 23 GLY C 103 GLY C 115 1 13 HELIX 24 24 GLY C 117 ALA C 126 1 10 HELIX 25 25 ASN C 129 MSE C 140 1 12 HELIX 26 26 ASN D 1 PHE D 5 5 5 HELIX 27 27 THR D 6 GLY D 24 1 19 HELIX 28 28 GLY D 29 GLU D 41 1 13 HELIX 29 29 GLY D 43 VAL D 52 1 10 HELIX 30 30 THR D 55 GLY D 68 1 14 HELIX 31 31 SER D 80 LYS D 98 1 19 HELIX 32 32 GLY D 103 GLY D 115 1 13 HELIX 33 33 GLY D 117 ALA D 126 1 10 HELIX 34 34 ASN D 129 MSE D 140 1 12 SHEET 1 A 2 ILE A 27 VAL A 28 0 SHEET 2 A 2 VAL A 78 LEU A 79 1 O VAL A 78 N VAL A 28 SHEET 1 B 2 ILE B 27 VAL B 28 0 SHEET 2 B 2 VAL B 78 LEU B 79 1 O VAL B 78 N VAL B 28 SHEET 1 C 2 ILE C 27 VAL C 28 0 SHEET 2 C 2 VAL C 78 LEU C 79 1 O VAL C 78 N VAL C 28 SHEET 1 D 2 ILE D 27 VAL D 28 0 SHEET 2 D 2 VAL D 78 LEU D 79 1 O VAL D 78 N VAL D 28 LINK C ASP A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N GLU A 67 1555 1555 1.33 LINK C GLY A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N PHE A 93 1555 1555 1.32 LINK C ASP A 139 N MSE A 140 1555 1555 1.33 LINK C MSE A 140 N MSE A 141 1555 1555 1.33 LINK C MSE A 141 N GLY A 142 1555 1555 1.33 LINK C ASP B 65 N MSE B 66 1555 1555 1.32 LINK C MSE B 66 N GLU B 67 1555 1555 1.32 LINK C GLY B 91 N MSE B 92 1555 1555 1.33 LINK C MSE B 92 N PHE B 93 1555 1555 1.33 LINK C ASP B 139 N MSE B 140 1555 1555 1.33 LINK C MSE B 140 N MSE B 141 1555 1555 1.33 LINK C ASP C 65 N MSE C 66 1555 1555 1.32 LINK C MSE C 66 N GLU C 67 1555 1555 1.33 LINK C GLY C 91 N MSE C 92 1555 1555 1.34 LINK C MSE C 92 N PHE C 93 1555 1555 1.34 LINK C ASP C 139 N MSE C 140 1555 1555 1.32 LINK C MSE C 140 N MSE C 141 1555 1555 1.32 LINK C MSE C 141 N GLY C 142 1555 1555 1.33 LINK C ASP D 65 N MSE D 66 1555 1555 1.33 LINK C MSE D 66 N GLU D 67 1555 1555 1.33 LINK C GLY D 91 N MSE D 92 1555 1555 1.32 LINK C MSE D 92 N PHE D 93 1555 1555 1.34 LINK C ASP D 139 N MSE D 140 1555 1555 1.32 LINK C MSE D 140 N MSE D 141 1555 1555 1.32 LINK C MSE D 141 N GLY D 142 1555 1555 1.32 SITE 1 AC1 4 THR A 6 GLY A 103 THR A 104 HOH A 163 SITE 1 AC2 7 HIS A 25 GLU A 67 GLY A 68 LYS A 69 SITE 2 AC2 7 LEU B 23 LYS B 69 GLU B 72 SITE 1 AC3 5 THR B 6 GLY B 103 THR B 104 HOH B 169 SITE 2 AC3 5 HOH B 175 SITE 1 AC4 14 HIS C 25 ILE C 27 GLY C 29 SER C 30 SITE 2 AC4 14 GLU C 31 GLU C 67 SER C 80 ARG C 82 SITE 3 AC4 14 GLY C 117 ILE C 118 ASP D 65 MSE D 66 SITE 4 AC4 14 GLU D 67 LYS D 69 SITE 1 AC5 6 ARG B 131 LEU C 136 ASP C 139 MSE C 141 SITE 2 AC5 6 GLY C 142 HOH C 169 SITE 1 AC6 3 MSE C 92 LYS C 96 GLN C 113 SITE 1 AC7 6 THR C 6 ARG C 8 GLY C 103 THR C 104 SITE 2 AC7 6 HOH C 147 HOH C 164 SITE 1 AC8 5 LEU A 97 THR A 137 MSE D 92 LYS D 96 SITE 2 AC8 5 HOH D 248 SITE 1 AC9 4 THR D 6 GLY D 103 THR D 104 HOH D 153 CRYST1 34.690 68.523 81.339 66.91 86.23 85.33 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028827 -0.002357 -0.001066 0.00000 SCALE2 0.000000 0.014642 -0.006182 0.00000 SCALE3 0.000000 0.000000 0.013374 0.00000