data_3FHF # _entry.id 3FHF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3FHF RCSB RCSB050594 WWPDB D_1000050594 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3FHG _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.entry_id 3FHF _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-12-09 _pdbx_database_status.SG_entry N _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Faucher, F.' 1 'Doublie, S.' 2 # _citation.id primary _citation.title 'Crystal structures of two archaeal 8-oxoguanine DNA glycosylases provide structural insight into guanine/8-oxoguanine distinction.' _citation.journal_abbrev Structure _citation.journal_volume 17 _citation.page_first 703 _citation.page_last 712 _citation.year 2009 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19446526 _citation.pdbx_database_id_DOI 10.1016/j.str.2009.03.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Faucher, F.' 1 primary 'Duclos, S.' 2 primary 'Bandaru, V.' 3 primary 'Wallace, S.S.' 4 primary 'Doublie, S.' 5 # _cell.entry_id 3FHF _cell.length_a 89.440 _cell.length_b 37.840 _cell.length_c 75.010 _cell.angle_alpha 90.000 _cell.angle_beta 116.080 _cell.angle_gamma 90.000 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FHF _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 5 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'N-glycosylase/DNA lyase' 25825.529 1 '3.2.2.-, 4.2.99.18' ? ? ? 2 water nat water 18.015 153 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MjOgg; 8-oxoguanine DNA glycosylase; DNA-(apurinic or apyrimidinic site) lyase; AP lyase' # _entity_name_sys.entity_id 1 _entity_name_sys.name 'E.C.3.2.2.-, E.C.4.2.99.18' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GNHHHHH(MSE)(MSE)LIKKIEELKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIGDG FLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAI IDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYLRTGKVLK ; _entity_poly.pdbx_seq_one_letter_code_can ;GNHHHHHMMLIKKIEELKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIGDGFLTLPREE LEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRHILRE LYENNYIDEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYLRTGKVLK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 MSE n 1 9 MSE n 1 10 LEU n 1 11 ILE n 1 12 LYS n 1 13 LYS n 1 14 ILE n 1 15 GLU n 1 16 GLU n 1 17 LEU n 1 18 LYS n 1 19 ASN n 1 20 SER n 1 21 GLU n 1 22 ILE n 1 23 LYS n 1 24 ASP n 1 25 ILE n 1 26 ILE n 1 27 ASP n 1 28 LYS n 1 29 ARG n 1 30 ILE n 1 31 GLN n 1 32 GLU n 1 33 PHE n 1 34 LYS n 1 35 SER n 1 36 PHE n 1 37 LYS n 1 38 ASN n 1 39 LYS n 1 40 SER n 1 41 ASN n 1 42 GLU n 1 43 GLU n 1 44 TRP n 1 45 PHE n 1 46 LYS n 1 47 GLU n 1 48 LEU n 1 49 CYS n 1 50 PHE n 1 51 CYS n 1 52 ILE n 1 53 LEU n 1 54 THR n 1 55 ALA n 1 56 ASN n 1 57 PHE n 1 58 THR n 1 59 ALA n 1 60 GLU n 1 61 GLY n 1 62 GLY n 1 63 ILE n 1 64 ARG n 1 65 ILE n 1 66 GLN n 1 67 LYS n 1 68 GLU n 1 69 ILE n 1 70 GLY n 1 71 ASP n 1 72 GLY n 1 73 PHE n 1 74 LEU n 1 75 THR n 1 76 LEU n 1 77 PRO n 1 78 ARG n 1 79 GLU n 1 80 GLU n 1 81 LEU n 1 82 GLU n 1 83 GLU n 1 84 LYS n 1 85 LEU n 1 86 LYS n 1 87 ASN n 1 88 LEU n 1 89 GLY n 1 90 HIS n 1 91 ARG n 1 92 PHE n 1 93 TYR n 1 94 ARG n 1 95 LYS n 1 96 ARG n 1 97 ALA n 1 98 GLU n 1 99 TYR n 1 100 ILE n 1 101 VAL n 1 102 LEU n 1 103 ALA n 1 104 ARG n 1 105 ARG n 1 106 PHE n 1 107 LYS n 1 108 ASN n 1 109 ILE n 1 110 LYS n 1 111 ASP n 1 112 ILE n 1 113 VAL n 1 114 GLU n 1 115 SER n 1 116 PHE n 1 117 GLU n 1 118 ASN n 1 119 GLU n 1 120 LYS n 1 121 VAL n 1 122 ALA n 1 123 ARG n 1 124 GLU n 1 125 PHE n 1 126 LEU n 1 127 VAL n 1 128 ARG n 1 129 ASN n 1 130 ILE n 1 131 LYS n 1 132 GLY n 1 133 ILE n 1 134 GLY n 1 135 TYR n 1 136 LYS n 1 137 GLU n 1 138 ALA n 1 139 SER n 1 140 HIS n 1 141 PHE n 1 142 LEU n 1 143 ARG n 1 144 ASN n 1 145 VAL n 1 146 GLY n 1 147 TYR n 1 148 ASP n 1 149 ASP n 1 150 VAL n 1 151 ALA n 1 152 ILE n 1 153 ILE n 1 154 ASP n 1 155 ARG n 1 156 HIS n 1 157 ILE n 1 158 LEU n 1 159 ARG n 1 160 GLU n 1 161 LEU n 1 162 TYR n 1 163 GLU n 1 164 ASN n 1 165 ASN n 1 166 TYR n 1 167 ILE n 1 168 ASP n 1 169 GLU n 1 170 ILE n 1 171 PRO n 1 172 LYS n 1 173 THR n 1 174 LEU n 1 175 SER n 1 176 ARG n 1 177 ARG n 1 178 LYS n 1 179 TYR n 1 180 LEU n 1 181 GLU n 1 182 ILE n 1 183 GLU n 1 184 ASN n 1 185 ILE n 1 186 LEU n 1 187 ARG n 1 188 ASP n 1 189 ILE n 1 190 GLY n 1 191 GLU n 1 192 GLU n 1 193 VAL n 1 194 ASN n 1 195 LEU n 1 196 LYS n 1 197 LEU n 1 198 SER n 1 199 GLU n 1 200 LEU n 1 201 ASP n 1 202 LEU n 1 203 TYR n 1 204 ILE n 1 205 TRP n 1 206 TYR n 1 207 LEU n 1 208 ARG n 1 209 THR n 1 210 GLY n 1 211 LYS n 1 212 VAL n 1 213 LEU n 1 214 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene '1451601, MJ0724, ogg' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanocaldococcus jannaschii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2190 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code OGG1_METJA _struct_ref.pdbx_db_accession Q58134 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MMLIKKIEELKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIGDGFLTLPREELEEKLKN LGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRHILRELYENNYI DEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYLRTGKVLK ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FHF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 214 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q58134 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 207 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 207 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FHF GLY A 1 ? UNP Q58134 ? ? 'EXPRESSION TAG' -6 1 1 3FHF ASN A 2 ? UNP Q58134 ? ? 'EXPRESSION TAG' -5 2 1 3FHF HIS A 3 ? UNP Q58134 ? ? 'EXPRESSION TAG' -4 3 1 3FHF HIS A 4 ? UNP Q58134 ? ? 'EXPRESSION TAG' -3 4 1 3FHF HIS A 5 ? UNP Q58134 ? ? 'EXPRESSION TAG' -2 5 1 3FHF HIS A 6 ? UNP Q58134 ? ? 'EXPRESSION TAG' -1 6 1 3FHF HIS A 7 ? UNP Q58134 ? ? 'EXPRESSION TAG' 0 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3FHF _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.27 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.9 _exptl_crystal_grow.temp 285 _exptl_crystal_grow.pdbx_details 'PEG 4000 30%, 0.1M sodium citrate, 1% b-Mercaptoethanol, pH 5.9, VAPOR DIFFUSION, HANGING DROP, temperature 285K' _exptl_crystal_grow.pdbx_pH_range . _exptl_crystal_grow.temp_details ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2008-03-19 _diffrn_detector.details 'Adjustable focus K-B pair Si plus Pt, Rh coatings' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator 'Double crystal cryo-cooled Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9794 1.0 2 0.9796 1.0 3 0.97166 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.pdbx_wavelength_list '0.9794, 0.9796, 0.97166' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_wavelength ? # _reflns.entry_id 3FHF _reflns.d_resolution_high 1.995 _reflns.d_resolution_low 19.560 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 29750 _reflns.number_obs 28691 _reflns.percent_possible_obs 96.4 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rsym_value 0.084 _reflns.pdbx_netI_over_sigmaI 15.43 _reflns.B_iso_Wilson_estimate 14.9 _reflns.pdbx_redundancy 5.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.995 _reflns_shell.d_res_low 2.10 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 92.1 _reflns_shell.Rmerge_I_obs 0.203 _reflns_shell.meanI_over_sigI_obs 8.23 _reflns_shell.pdbx_Rsym_value 0.279 _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.number_unique_all 4041 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3FHF _refine.ls_d_res_high 1.995 _refine.ls_d_res_low 19.560 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF 2736238.000 _refine.pdbx_data_cutoff_low_absF 0.000 _refine.ls_percent_reflns_obs 98.500 _refine.ls_number_reflns_obs 15220 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details '1. The Friedel pairs were used in phasing. 2. BULK SOLVENT MODEL USED in refinement.' _refine.ls_R_factor_R_work 0.202 _refine.ls_R_factor_R_free 0.251 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 759 _refine.ls_R_factor_R_free_error 0.009 _refine.B_iso_mean 24.682 _refine.solvent_model_param_bsol 56.010 _refine.solvent_model_param_ksol 0.400 _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.aniso_B[1][1] -3.220 _refine.aniso_B[2][2] 4.180 _refine.aniso_B[3][3] -0.960 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.390 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT MODEL' _refine.pdbx_method_to_determine_struct ? _refine.B_iso_max 56.48 _refine.B_iso_min 7.20 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 15485 _refine.ls_R_factor_all 0.217 _refine.ls_R_factor_obs 0.222 _refine.ls_redundancy_reflns_obs ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3FHF _refine_analyze.Luzzati_coordinate_error_obs 0.220 _refine_analyze.Luzzati_sigma_a_obs 0.130 _refine_analyze.Luzzati_d_res_low_obs 5.000 _refine_analyze.Luzzati_coordinate_error_free 0.280 _refine_analyze.Luzzati_sigma_a_free 0.240 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1815 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 153 _refine_hist.number_atoms_total 1968 _refine_hist.d_res_high 1.995 _refine_hist.d_res_low 19.560 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.005 ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? 1.100 ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? 18.200 ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? 0.700 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 1.310 1.500 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 1.890 2.000 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 2.330 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 3.420 2.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.995 _refine_ls_shell.d_res_low 2.130 _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.percent_reflns_obs 95.700 _refine_ls_shell.number_reflns_R_work 2310 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.227 _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.percent_reflns_R_free 4.800 _refine_ls_shell.number_reflns_R_free 116 _refine_ls_shell.R_factor_R_free_error 0.028 _refine_ls_shell.number_reflns_all 2426 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' 3 ligand.param ligand.top 'X-RAY DIFFRACTION' # _struct.entry_id 3FHF _struct.title 'Crystal structure of Methanocaldococcus jannaschii 8-oxoguanine DNA glycosylase (MjOgg)' _struct.pdbx_descriptor 'N-glycosylase/DNA lyase (E.C.3.2.2.-, E.C.4.2.99.18)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FHF _struct_keywords.pdbx_keywords 'DNA repair, HYDROLASE, LYASE' _struct_keywords.text ;ogg, helix-hairpin-helix, glycosylase, 8-oxoguanine, 8-oxoG, MjOgg, DNA damage, DNA repair, Glycosidase, Hydrolase, Lyase, Multifunctional enzyme, Nuclease ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 4 ? ASN A 19 ? HIS A -3 ASN A 12 1 ? 16 HELX_P HELX_P2 2 GLU A 21 ? SER A 35 ? GLU A 14 SER A 28 1 ? 15 HELX_P HELX_P3 3 PHE A 36 ? LYS A 39 ? PHE A 29 LYS A 32 5 ? 4 HELX_P HELX_P4 4 SER A 40 ? ALA A 55 ? SER A 33 ALA A 48 1 ? 16 HELX_P HELX_P5 5 THR A 58 ? GLY A 70 ? THR A 51 GLY A 63 1 ? 13 HELX_P HELX_P6 6 ASP A 71 ? LEU A 76 ? ASP A 64 LEU A 69 1 ? 6 HELX_P HELX_P7 7 PRO A 77 ? LEU A 88 ? PRO A 70 LEU A 81 1 ? 12 HELX_P HELX_P8 8 PHE A 92 ? ARG A 104 ? PHE A 85 ARG A 97 1 ? 13 HELX_P HELX_P9 9 ARG A 105 ? LYS A 107 ? ARG A 98 LYS A 100 5 ? 3 HELX_P HELX_P10 10 ASN A 108 ? PHE A 116 ? ASN A 101 PHE A 109 1 ? 9 HELX_P HELX_P11 11 ASN A 118 ? ILE A 130 ? ASN A 111 ILE A 123 1 ? 13 HELX_P HELX_P12 12 GLY A 134 ? VAL A 145 ? GLY A 127 VAL A 138 1 ? 12 HELX_P HELX_P13 13 ASP A 154 ? ASN A 164 ? ASP A 147 ASN A 157 1 ? 11 HELX_P HELX_P14 14 SER A 175 ? VAL A 193 ? SER A 168 VAL A 186 1 ? 19 HELX_P HELX_P15 15 LYS A 196 ? GLY A 210 ? LYS A 189 GLY A 203 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 7 C ? ? ? 1_555 A MSE 8 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale ? ? A MSE 8 C ? ? ? 1_555 A MSE 9 N ? ? A MSE 1 A MSE 2 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A MSE 9 C ? ? ? 1_555 A LEU 10 N ? ? A MSE 2 A LEU 3 1_555 ? ? ? ? ? ? ? 1.326 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 3FHF _atom_sites.fract_transf_matrix[1][1] 0.011181 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005473 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026427 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014843 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -6 -6 GLY GLY A . n A 1 2 ASN 2 -5 -5 ASN ASN A . n A 1 3 HIS 3 -4 -4 HIS HIS A . n A 1 4 HIS 4 -3 -3 HIS HIS A . n A 1 5 HIS 5 -2 -2 HIS HIS A . n A 1 6 HIS 6 -1 -1 HIS HIS A . n A 1 7 HIS 7 0 0 HIS HIS A . n A 1 8 MSE 8 1 1 MSE MSE A . n A 1 9 MSE 9 2 2 MSE MSE A . n A 1 10 LEU 10 3 3 LEU LEU A . n A 1 11 ILE 11 4 4 ILE ILE A . n A 1 12 LYS 12 5 5 LYS LYS A . n A 1 13 LYS 13 6 6 LYS LYS A . n A 1 14 ILE 14 7 7 ILE ILE A . n A 1 15 GLU 15 8 8 GLU GLU A . n A 1 16 GLU 16 9 9 GLU GLU A . n A 1 17 LEU 17 10 10 LEU LEU A . n A 1 18 LYS 18 11 11 LYS LYS A . n A 1 19 ASN 19 12 12 ASN ASN A . n A 1 20 SER 20 13 13 SER SER A . n A 1 21 GLU 21 14 14 GLU GLU A . n A 1 22 ILE 22 15 15 ILE ILE A . n A 1 23 LYS 23 16 16 LYS LYS A . n A 1 24 ASP 24 17 17 ASP ASP A . n A 1 25 ILE 25 18 18 ILE ILE A . n A 1 26 ILE 26 19 19 ILE ILE A . n A 1 27 ASP 27 20 20 ASP ASP A . n A 1 28 LYS 28 21 21 LYS LYS A . n A 1 29 ARG 29 22 22 ARG ARG A . n A 1 30 ILE 30 23 23 ILE ILE A . n A 1 31 GLN 31 24 24 GLN GLN A . n A 1 32 GLU 32 25 25 GLU GLU A . n A 1 33 PHE 33 26 26 PHE PHE A . n A 1 34 LYS 34 27 27 LYS LYS A . n A 1 35 SER 35 28 28 SER SER A . n A 1 36 PHE 36 29 29 PHE PHE A . n A 1 37 LYS 37 30 30 LYS LYS A . n A 1 38 ASN 38 31 31 ASN ASN A . n A 1 39 LYS 39 32 32 LYS LYS A . n A 1 40 SER 40 33 33 SER SER A . n A 1 41 ASN 41 34 34 ASN ASN A . n A 1 42 GLU 42 35 35 GLU GLU A . n A 1 43 GLU 43 36 36 GLU GLU A . n A 1 44 TRP 44 37 37 TRP TRP A . n A 1 45 PHE 45 38 38 PHE PHE A . n A 1 46 LYS 46 39 39 LYS LYS A . n A 1 47 GLU 47 40 40 GLU GLU A . n A 1 48 LEU 48 41 41 LEU LEU A . n A 1 49 CYS 49 42 42 CYS CYS A . n A 1 50 PHE 50 43 43 PHE PHE A . n A 1 51 CYS 51 44 44 CYS CYS A . n A 1 52 ILE 52 45 45 ILE ILE A . n A 1 53 LEU 53 46 46 LEU LEU A . n A 1 54 THR 54 47 47 THR THR A . n A 1 55 ALA 55 48 48 ALA ALA A . n A 1 56 ASN 56 49 49 ASN ASN A . n A 1 57 PHE 57 50 50 PHE PHE A . n A 1 58 THR 58 51 51 THR THR A . n A 1 59 ALA 59 52 52 ALA ALA A . n A 1 60 GLU 60 53 53 GLU GLU A . n A 1 61 GLY 61 54 54 GLY GLY A . n A 1 62 GLY 62 55 55 GLY GLY A . n A 1 63 ILE 63 56 56 ILE ILE A . n A 1 64 ARG 64 57 57 ARG ARG A . n A 1 65 ILE 65 58 58 ILE ILE A . n A 1 66 GLN 66 59 59 GLN GLN A . n A 1 67 LYS 67 60 60 LYS LYS A . n A 1 68 GLU 68 61 61 GLU GLU A . n A 1 69 ILE 69 62 62 ILE ILE A . n A 1 70 GLY 70 63 63 GLY GLY A . n A 1 71 ASP 71 64 64 ASP ASP A . n A 1 72 GLY 72 65 65 GLY GLY A . n A 1 73 PHE 73 66 66 PHE PHE A . n A 1 74 LEU 74 67 67 LEU LEU A . n A 1 75 THR 75 68 68 THR THR A . n A 1 76 LEU 76 69 69 LEU LEU A . n A 1 77 PRO 77 70 70 PRO PRO A . n A 1 78 ARG 78 71 71 ARG ARG A . n A 1 79 GLU 79 72 72 GLU GLU A . n A 1 80 GLU 80 73 73 GLU GLU A . n A 1 81 LEU 81 74 74 LEU LEU A . n A 1 82 GLU 82 75 75 GLU GLU A . n A 1 83 GLU 83 76 76 GLU GLU A . n A 1 84 LYS 84 77 77 LYS LYS A . n A 1 85 LEU 85 78 78 LEU LEU A . n A 1 86 LYS 86 79 79 LYS LYS A . n A 1 87 ASN 87 80 80 ASN ASN A . n A 1 88 LEU 88 81 81 LEU LEU A . n A 1 89 GLY 89 82 82 GLY GLY A . n A 1 90 HIS 90 83 83 HIS HIS A . n A 1 91 ARG 91 84 84 ARG ARG A . n A 1 92 PHE 92 85 85 PHE PHE A . n A 1 93 TYR 93 86 86 TYR TYR A . n A 1 94 ARG 94 87 87 ARG ARG A . n A 1 95 LYS 95 88 88 LYS LYS A . n A 1 96 ARG 96 89 89 ARG ARG A . n A 1 97 ALA 97 90 90 ALA ALA A . n A 1 98 GLU 98 91 91 GLU GLU A . n A 1 99 TYR 99 92 92 TYR TYR A . n A 1 100 ILE 100 93 93 ILE ILE A . n A 1 101 VAL 101 94 94 VAL VAL A . n A 1 102 LEU 102 95 95 LEU LEU A . n A 1 103 ALA 103 96 96 ALA ALA A . n A 1 104 ARG 104 97 97 ARG ARG A . n A 1 105 ARG 105 98 98 ARG ARG A . n A 1 106 PHE 106 99 99 PHE PHE A . n A 1 107 LYS 107 100 100 LYS LYS A . n A 1 108 ASN 108 101 101 ASN ASN A . n A 1 109 ILE 109 102 102 ILE ILE A . n A 1 110 LYS 110 103 103 LYS LYS A . n A 1 111 ASP 111 104 104 ASP ASP A . n A 1 112 ILE 112 105 105 ILE ILE A . n A 1 113 VAL 113 106 106 VAL VAL A . n A 1 114 GLU 114 107 107 GLU GLU A . n A 1 115 SER 115 108 108 SER SER A . n A 1 116 PHE 116 109 109 PHE PHE A . n A 1 117 GLU 117 110 110 GLU GLU A . n A 1 118 ASN 118 111 111 ASN ASN A . n A 1 119 GLU 119 112 112 GLU GLU A . n A 1 120 LYS 120 113 113 LYS LYS A . n A 1 121 VAL 121 114 114 VAL VAL A . n A 1 122 ALA 122 115 115 ALA ALA A . n A 1 123 ARG 123 116 116 ARG ARG A . n A 1 124 GLU 124 117 117 GLU GLU A . n A 1 125 PHE 125 118 118 PHE PHE A . n A 1 126 LEU 126 119 119 LEU LEU A . n A 1 127 VAL 127 120 120 VAL VAL A . n A 1 128 ARG 128 121 121 ARG ARG A . n A 1 129 ASN 129 122 122 ASN ASN A . n A 1 130 ILE 130 123 123 ILE ILE A . n A 1 131 LYS 131 124 124 LYS LYS A . n A 1 132 GLY 132 125 125 GLY GLY A . n A 1 133 ILE 133 126 126 ILE ILE A . n A 1 134 GLY 134 127 127 GLY GLY A . n A 1 135 TYR 135 128 128 TYR TYR A . n A 1 136 LYS 136 129 129 LYS LYS A . n A 1 137 GLU 137 130 130 GLU GLU A . n A 1 138 ALA 138 131 131 ALA ALA A . n A 1 139 SER 139 132 132 SER SER A . n A 1 140 HIS 140 133 133 HIS HIS A . n A 1 141 PHE 141 134 134 PHE PHE A . n A 1 142 LEU 142 135 135 LEU LEU A . n A 1 143 ARG 143 136 136 ARG ARG A . n A 1 144 ASN 144 137 137 ASN ASN A . n A 1 145 VAL 145 138 138 VAL VAL A . n A 1 146 GLY 146 139 139 GLY GLY A . n A 1 147 TYR 147 140 140 TYR TYR A . n A 1 148 ASP 148 141 141 ASP ASP A . n A 1 149 ASP 149 142 142 ASP ASP A . n A 1 150 VAL 150 143 143 VAL VAL A . n A 1 151 ALA 151 144 144 ALA ALA A . n A 1 152 ILE 152 145 145 ILE ILE A . n A 1 153 ILE 153 146 146 ILE ILE A . n A 1 154 ASP 154 147 147 ASP ASP A . n A 1 155 ARG 155 148 148 ARG ARG A . n A 1 156 HIS 156 149 149 HIS HIS A . n A 1 157 ILE 157 150 150 ILE ILE A . n A 1 158 LEU 158 151 151 LEU LEU A . n A 1 159 ARG 159 152 152 ARG ARG A . n A 1 160 GLU 160 153 153 GLU GLU A . n A 1 161 LEU 161 154 154 LEU LEU A . n A 1 162 TYR 162 155 155 TYR TYR A . n A 1 163 GLU 163 156 156 GLU GLU A . n A 1 164 ASN 164 157 157 ASN ASN A . n A 1 165 ASN 165 158 158 ASN ASN A . n A 1 166 TYR 166 159 159 TYR TYR A . n A 1 167 ILE 167 160 160 ILE ILE A . n A 1 168 ASP 168 161 161 ASP ASP A . n A 1 169 GLU 169 162 162 GLU GLU A . n A 1 170 ILE 170 163 163 ILE ILE A . n A 1 171 PRO 171 164 164 PRO PRO A . n A 1 172 LYS 172 165 165 LYS LYS A . n A 1 173 THR 173 166 166 THR THR A . n A 1 174 LEU 174 167 167 LEU LEU A . n A 1 175 SER 175 168 168 SER SER A . n A 1 176 ARG 176 169 169 ARG ARG A . n A 1 177 ARG 177 170 170 ARG ARG A . n A 1 178 LYS 178 171 171 LYS LYS A . n A 1 179 TYR 179 172 172 TYR TYR A . n A 1 180 LEU 180 173 173 LEU LEU A . n A 1 181 GLU 181 174 174 GLU GLU A . n A 1 182 ILE 182 175 175 ILE ILE A . n A 1 183 GLU 183 176 176 GLU GLU A . n A 1 184 ASN 184 177 177 ASN ASN A . n A 1 185 ILE 185 178 178 ILE ILE A . n A 1 186 LEU 186 179 179 LEU LEU A . n A 1 187 ARG 187 180 180 ARG ARG A . n A 1 188 ASP 188 181 181 ASP ASP A . n A 1 189 ILE 189 182 182 ILE ILE A . n A 1 190 GLY 190 183 183 GLY GLY A . n A 1 191 GLU 191 184 184 GLU GLU A . n A 1 192 GLU 192 185 185 GLU GLU A . n A 1 193 VAL 193 186 186 VAL VAL A . n A 1 194 ASN 194 187 187 ASN ASN A . n A 1 195 LEU 195 188 188 LEU LEU A . n A 1 196 LYS 196 189 189 LYS LYS A . n A 1 197 LEU 197 190 190 LEU LEU A . n A 1 198 SER 198 191 191 SER SER A . n A 1 199 GLU 199 192 192 GLU GLU A . n A 1 200 LEU 200 193 193 LEU LEU A . n A 1 201 ASP 201 194 194 ASP ASP A . n A 1 202 LEU 202 195 195 LEU LEU A . n A 1 203 TYR 203 196 196 TYR TYR A . n A 1 204 ILE 204 197 197 ILE ILE A . n A 1 205 TRP 205 198 198 TRP TRP A . n A 1 206 TYR 206 199 199 TYR TYR A . n A 1 207 LEU 207 200 200 LEU LEU A . n A 1 208 ARG 208 201 201 ARG ARG A . n A 1 209 THR 209 202 202 THR THR A . n A 1 210 GLY 210 203 203 GLY GLY A . n A 1 211 LYS 211 204 204 LYS LYS A . n A 1 212 VAL 212 205 205 VAL VAL A . n A 1 213 LEU 213 206 206 LEU LEU A . n A 1 214 LYS 214 207 207 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 208 1 HOH HOH A . B 2 HOH 2 209 2 HOH HOH A . B 2 HOH 3 210 3 HOH HOH A . B 2 HOH 4 211 4 HOH HOH A . B 2 HOH 5 212 5 HOH HOH A . B 2 HOH 6 213 6 HOH HOH A . B 2 HOH 7 214 7 HOH HOH A . B 2 HOH 8 215 8 HOH HOH A . B 2 HOH 9 216 9 HOH HOH A . B 2 HOH 10 217 10 HOH HOH A . B 2 HOH 11 218 11 HOH HOH A . B 2 HOH 12 219 12 HOH HOH A . B 2 HOH 13 220 13 HOH HOH A . B 2 HOH 14 221 14 HOH HOH A . B 2 HOH 15 222 15 HOH HOH A . B 2 HOH 16 223 16 HOH HOH A . B 2 HOH 17 224 17 HOH HOH A . B 2 HOH 18 225 18 HOH HOH A . B 2 HOH 19 226 19 HOH HOH A . B 2 HOH 20 227 20 HOH HOH A . B 2 HOH 21 228 21 HOH HOH A . B 2 HOH 22 229 22 HOH HOH A . B 2 HOH 23 230 23 HOH HOH A . B 2 HOH 24 231 24 HOH HOH A . B 2 HOH 25 232 25 HOH HOH A . B 2 HOH 26 233 26 HOH HOH A . B 2 HOH 27 234 27 HOH HOH A . B 2 HOH 28 235 28 HOH HOH A . B 2 HOH 29 236 29 HOH HOH A . B 2 HOH 30 237 30 HOH HOH A . B 2 HOH 31 238 31 HOH HOH A . B 2 HOH 32 239 32 HOH HOH A . B 2 HOH 33 240 33 HOH HOH A . B 2 HOH 34 241 34 HOH HOH A . B 2 HOH 35 242 35 HOH HOH A . B 2 HOH 36 243 36 HOH HOH A . B 2 HOH 37 244 37 HOH HOH A . B 2 HOH 38 245 38 HOH HOH A . B 2 HOH 39 246 39 HOH HOH A . B 2 HOH 40 247 40 HOH HOH A . B 2 HOH 41 248 41 HOH HOH A . B 2 HOH 42 249 42 HOH HOH A . B 2 HOH 43 250 43 HOH HOH A . B 2 HOH 44 251 44 HOH HOH A . B 2 HOH 45 252 45 HOH HOH A . B 2 HOH 46 253 46 HOH HOH A . B 2 HOH 47 254 47 HOH HOH A . B 2 HOH 48 255 48 HOH HOH A . B 2 HOH 49 256 49 HOH HOH A . B 2 HOH 50 257 50 HOH HOH A . B 2 HOH 51 258 51 HOH HOH A . B 2 HOH 52 259 52 HOH HOH A . B 2 HOH 53 260 53 HOH HOH A . B 2 HOH 54 261 54 HOH HOH A . B 2 HOH 55 262 55 HOH HOH A . B 2 HOH 56 263 56 HOH HOH A . B 2 HOH 57 264 57 HOH HOH A . B 2 HOH 58 265 58 HOH HOH A . B 2 HOH 59 266 59 HOH HOH A . B 2 HOH 60 267 60 HOH HOH A . B 2 HOH 61 268 61 HOH HOH A . B 2 HOH 62 269 62 HOH HOH A . B 2 HOH 63 270 63 HOH HOH A . B 2 HOH 64 271 64 HOH HOH A . B 2 HOH 65 272 65 HOH HOH A . B 2 HOH 66 273 66 HOH HOH A . B 2 HOH 67 274 67 HOH HOH A . B 2 HOH 68 275 68 HOH HOH A . B 2 HOH 69 276 69 HOH HOH A . B 2 HOH 70 277 70 HOH HOH A . B 2 HOH 71 278 71 HOH HOH A . B 2 HOH 72 279 72 HOH HOH A . B 2 HOH 73 280 73 HOH HOH A . B 2 HOH 74 281 74 HOH HOH A . B 2 HOH 75 282 75 HOH HOH A . B 2 HOH 76 283 76 HOH HOH A . B 2 HOH 77 284 77 HOH HOH A . B 2 HOH 78 285 78 HOH HOH A . B 2 HOH 79 286 79 HOH HOH A . B 2 HOH 80 287 80 HOH HOH A . B 2 HOH 81 288 81 HOH HOH A . B 2 HOH 82 289 82 HOH HOH A . B 2 HOH 83 290 83 HOH HOH A . B 2 HOH 84 291 84 HOH HOH A . B 2 HOH 85 292 85 HOH HOH A . B 2 HOH 86 293 86 HOH HOH A . B 2 HOH 87 294 87 HOH HOH A . B 2 HOH 88 295 88 HOH HOH A . B 2 HOH 89 296 89 HOH HOH A . B 2 HOH 90 297 90 HOH HOH A . B 2 HOH 91 298 91 HOH HOH A . B 2 HOH 92 299 92 HOH HOH A . B 2 HOH 93 300 93 HOH HOH A . B 2 HOH 94 301 94 HOH HOH A . B 2 HOH 95 302 95 HOH HOH A . B 2 HOH 96 303 96 HOH HOH A . B 2 HOH 97 304 97 HOH HOH A . B 2 HOH 98 305 98 HOH HOH A . B 2 HOH 99 306 99 HOH HOH A . B 2 HOH 100 307 100 HOH HOH A . B 2 HOH 101 308 101 HOH HOH A . B 2 HOH 102 309 102 HOH HOH A . B 2 HOH 103 310 103 HOH HOH A . B 2 HOH 104 311 104 HOH HOH A . B 2 HOH 105 312 105 HOH HOH A . B 2 HOH 106 313 106 HOH HOH A . B 2 HOH 107 314 107 HOH HOH A . B 2 HOH 108 315 108 HOH HOH A . B 2 HOH 109 316 109 HOH HOH A . B 2 HOH 110 317 110 HOH HOH A . B 2 HOH 111 318 111 HOH HOH A . B 2 HOH 112 319 112 HOH HOH A . B 2 HOH 113 320 113 HOH HOH A . B 2 HOH 114 321 114 HOH HOH A . B 2 HOH 115 322 115 HOH HOH A . B 2 HOH 116 323 116 HOH HOH A . B 2 HOH 117 324 117 HOH HOH A . B 2 HOH 118 325 118 HOH HOH A . B 2 HOH 119 326 119 HOH HOH A . B 2 HOH 120 327 120 HOH HOH A . B 2 HOH 121 328 121 HOH HOH A . B 2 HOH 122 329 122 HOH HOH A . B 2 HOH 123 330 123 HOH HOH A . B 2 HOH 124 331 124 HOH HOH A . B 2 HOH 125 332 125 HOH HOH A . B 2 HOH 126 333 126 HOH HOH A . B 2 HOH 127 334 127 HOH HOH A . B 2 HOH 128 335 128 HOH HOH A . B 2 HOH 129 336 129 HOH HOH A . B 2 HOH 130 337 130 HOH HOH A . B 2 HOH 131 338 131 HOH HOH A . B 2 HOH 132 339 132 HOH HOH A . B 2 HOH 133 340 133 HOH HOH A . B 2 HOH 134 341 134 HOH HOH A . B 2 HOH 135 342 135 HOH HOH A . B 2 HOH 136 343 136 HOH HOH A . B 2 HOH 137 344 137 HOH HOH A . B 2 HOH 138 345 138 HOH HOH A . B 2 HOH 139 346 139 HOH HOH A . B 2 HOH 140 347 140 HOH HOH A . B 2 HOH 141 348 141 HOH HOH A . B 2 HOH 142 349 142 HOH HOH A . B 2 HOH 143 350 143 HOH HOH A . B 2 HOH 144 351 144 HOH HOH A . B 2 HOH 145 352 145 HOH HOH A . B 2 HOH 146 353 146 HOH HOH A . B 2 HOH 147 354 147 HOH HOH A . B 2 HOH 148 355 148 HOH HOH A . B 2 HOH 149 356 149 HOH HOH A . B 2 HOH 150 357 150 HOH HOH A . B 2 HOH 151 358 151 HOH HOH A . B 2 HOH 152 359 152 HOH HOH A . B 2 HOH 153 360 153 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 9 A MSE 2 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 246 ? B HOH . 2 1 A HOH 333 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-05-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-03-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal SCALA . ? other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data processing' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 1 CNS 1.2 ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 2 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 Blu-Ice . ? ? ? ? 'data collection' ? ? ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 SCALA . ? ? ? ? 'data scaling' ? ? ? 6 SHARP . ? ? ? ? phasing ? ? ? 7 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 185 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 185 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_656 _pdbx_validate_symm_contact.dist 1.98 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 165 ? ? 79.32 -65.32 2 1 LEU A 206 ? ? -108.86 -123.28 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #