data_3FHW # _entry.id 3FHW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3FHW RCSB RCSB050611 WWPDB D_1000050611 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3DM4 . unspecified TargetDB BpR162 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FHW _pdbx_database_status.recvd_initial_deposition_date 2008-12-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuzin, A.P.' 1 'Neely, H.' 2 'Seetharaman, J.' 3 'Forouhar, F.' 4 'Wang, D.' 5 'Mao, L.' 6 'Maglaqui, M.' 7 'Xiao, R.' 8 'Liu, J.' 9 'Baran, M.C.' 10 'Acton, T.B.' 11 'Rost, B.' 12 'Montelione, G.T.' 13 'Hunt, J.F.' 14 'Tong, L.' 15 'Northeast Structural Genomics Consortium (NESG)' 16 # _citation.id primary _citation.title 'Crystal structure of the protein priB from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR162.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kuzin, A.P.' 1 primary 'Neely, H.' 2 primary 'Seetharaman, J.' 3 primary 'Forouhar, F.' 4 primary 'Wang, D.' 5 primary 'Mao, L.' 6 primary 'Maglaqui, M.' 7 primary 'Xiao, R.' 8 primary 'Liu, J.' 9 primary 'Baran, M.C.' 10 primary 'Acton, T.B.' 11 primary 'Rost, B.' 12 primary 'Montelione, G.T.' 13 primary 'Hunt, J.F.' 14 primary 'Tong, L.' 15 # _cell.entry_id 3FHW _cell.length_a 55.330 _cell.length_b 64.320 _cell.length_c 75.930 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FHW _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Primosomal replication protein n' 12698.100 2 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 3 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 4 water nat water 18.015 121 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)NTLELSARVLECGA(MSE)RHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTE (MSE)QVQGFLAPARKDSVKVKLHLQQARRIAGS(MSE)GRDPLVGLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQGFLAPAR KDSVKVKLHLQQARRIAGSMGRDPLVGLEHHHHHH ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier BpR162 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 ASN n 1 3 THR n 1 4 LEU n 1 5 GLU n 1 6 LEU n 1 7 SER n 1 8 ALA n 1 9 ARG n 1 10 VAL n 1 11 LEU n 1 12 GLU n 1 13 CYS n 1 14 GLY n 1 15 ALA n 1 16 MSE n 1 17 ARG n 1 18 HIS n 1 19 THR n 1 20 PRO n 1 21 ALA n 1 22 GLY n 1 23 LEU n 1 24 PRO n 1 25 ALA n 1 26 LEU n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 LEU n 1 31 VAL n 1 32 HIS n 1 33 GLU n 1 34 SER n 1 35 GLU n 1 36 VAL n 1 37 VAL n 1 38 GLU n 1 39 ALA n 1 40 GLY n 1 41 HIS n 1 42 PRO n 1 43 ARG n 1 44 ARG n 1 45 VAL n 1 46 GLU n 1 47 LEU n 1 48 THR n 1 49 ILE n 1 50 SER n 1 51 ALA n 1 52 VAL n 1 53 ALA n 1 54 LEU n 1 55 GLY n 1 56 ASP n 1 57 LEU n 1 58 ALA n 1 59 LEU n 1 60 LEU n 1 61 LEU n 1 62 ALA n 1 63 ASP n 1 64 THR n 1 65 PRO n 1 66 LEU n 1 67 GLY n 1 68 THR n 1 69 GLU n 1 70 MSE n 1 71 GLN n 1 72 VAL n 1 73 GLN n 1 74 GLY n 1 75 PHE n 1 76 LEU n 1 77 ALA n 1 78 PRO n 1 79 ALA n 1 80 ARG n 1 81 LYS n 1 82 ASP n 1 83 SER n 1 84 VAL n 1 85 LYS n 1 86 VAL n 1 87 LYS n 1 88 LEU n 1 89 HIS n 1 90 LEU n 1 91 GLN n 1 92 GLN n 1 93 ALA n 1 94 ARG n 1 95 ARG n 1 96 ILE n 1 97 ALA n 1 98 GLY n 1 99 SER n 1 100 MSE n 1 101 GLY n 1 102 ARG n 1 103 ASP n 1 104 PRO n 1 105 LEU n 1 106 VAL n 1 107 GLY n 1 108 LEU n 1 109 GLU n 1 110 HIS n 1 111 HIS n 1 112 HIS n 1 113 HIS n 1 114 HIS n 1 115 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'priB, BPP2467' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bordetella parapertussis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 519 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRIB_BORPA _struct_ref.pdbx_db_accession P67675 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQGFLAPAR KDSVKVKLHLQQARRIAGSMGRDPLVG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FHW A 1 ? 107 ? P67675 1 ? 107 ? 1 107 2 1 3FHW B 1 ? 107 ? P67675 1 ? 107 ? 1 107 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3FHW LEU A 108 ? UNP P67675 ? ? 'expression tag' 108 1 1 3FHW GLU A 109 ? UNP P67675 ? ? 'expression tag' 109 2 1 3FHW HIS A 110 ? UNP P67675 ? ? 'expression tag' 110 3 1 3FHW HIS A 111 ? UNP P67675 ? ? 'expression tag' 111 4 1 3FHW HIS A 112 ? UNP P67675 ? ? 'expression tag' 112 5 1 3FHW HIS A 113 ? UNP P67675 ? ? 'expression tag' 113 6 1 3FHW HIS A 114 ? UNP P67675 ? ? 'expression tag' 114 7 1 3FHW HIS A 115 ? UNP P67675 ? ? 'expression tag' 115 8 2 3FHW LEU B 108 ? UNP P67675 ? ? 'expression tag' 108 9 2 3FHW GLU B 109 ? UNP P67675 ? ? 'expression tag' 109 10 2 3FHW HIS B 110 ? UNP P67675 ? ? 'expression tag' 110 11 2 3FHW HIS B 111 ? UNP P67675 ? ? 'expression tag' 111 12 2 3FHW HIS B 112 ? UNP P67675 ? ? 'expression tag' 112 13 2 3FHW HIS B 113 ? UNP P67675 ? ? 'expression tag' 113 14 2 3FHW HIS B 114 ? UNP P67675 ? ? 'expression tag' 114 15 2 3FHW HIS B 115 ? UNP P67675 ? ? 'expression tag' 115 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3FHW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.66 _exptl_crystal.density_percent_sol 53.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M MES, 1.5M NaCl, 0.1M NaH2PO4, 0.1M KH2PO4, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 297K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2007-11-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979 # _reflns.entry_id 3FHW _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.9 _reflns.number_obs 41038 _reflns.number_all ? _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 92.2 _reflns_shell.Rmerge_I_obs 0.299 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 4.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3FHW _refine.ls_number_reflns_obs 18375 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.43 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.27613 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.27544 _refine.ls_R_factor_R_free 0.28875 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 1006 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.915 _refine.correlation_coeff_Fo_to_Fc_free 0.909 _refine.B_iso_mean 23.793 _refine.aniso_B[1][1] -0.05 _refine.aniso_B[2][2] 0.10 _refine.aniso_B[3][3] -0.05 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;Authors explanation on why Rfree/R are high at this resolution: The analyses of the Patterson function reveals a significant off-origin peak that is 56.98 % of the origin peak, indicating pseudo translational symmetry. The chance of finding a peak of this or larger height by random in a structure without pseudo translational symmetry is equal to the 2.5284e-05. The detected tranlational NCS is most likely also responsible for the elevated intensity ratio. The results of the L-test indicate that the intensity statistics behave as expected. No twinning is suspected. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.198 _refine.pdbx_overall_ESU_R_Free 0.167 _refine.overall_SU_ML 0.110 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.109 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1494 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 121 _refine_hist.number_atoms_total 1625 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 22.43 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.022 ? 1529 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.258 2.014 ? 2064 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.789 5.000 ? 202 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 29.552 22.857 ? 56 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.707 15.000 ? 285 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.980 15.000 ? 16 'X-RAY DIFFRACTION' ? r_chiral_restr 0.071 0.200 ? 258 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1086 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.230 0.200 ? 629 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.294 0.200 ? 1029 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.142 0.200 ? 105 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.276 0.200 ? 78 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.216 0.200 ? 11 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 0.423 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.571 1.500 ? 997 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.125 2.000 ? 1589 'X-RAY DIFFRACTION' ? r_scbond_it 2.332 3.000 ? 532 'X-RAY DIFFRACTION' ? r_scangle_it 3.721 4.500 ? 472 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_R_work 1042 _refine_ls_shell.R_factor_R_work 0.267 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.292 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3FHW _struct.title 'Crystal structure of the protein priB from Bordetella parapertussis. Northeast Structural Genomics Consortium target BpR162.' _struct.pdbx_descriptor 'Primosomal replication protein n' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FHW _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text ;priB BpR162 X-RAY NESG, Structural Genomics, PSI-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, DNA replication, DNA-binding, Primosome, DNA BINDING PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details dimer # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 55 ? ALA A 62 ? GLY A 55 ALA A 62 1 ? 8 HELX_P HELX_P2 2 GLY B 55 ? ALA B 62 ? GLY B 55 ALA B 62 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A ASN 2 N ? ? A MSE 1 A ASN 2 1_555 ? ? ? ? ? ? ? 1.332 ? covale2 covale ? ? A ALA 15 C ? ? ? 1_555 A MSE 16 N ? ? A ALA 15 A MSE 16 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale ? ? A MSE 16 C ? ? ? 1_555 A ARG 17 N ? ? A MSE 16 A ARG 17 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A GLU 69 C ? ? ? 1_555 A MSE 70 N ? ? A GLU 69 A MSE 70 1_555 ? ? ? ? ? ? ? 1.331 ? covale5 covale ? ? A MSE 70 C ? ? ? 1_555 A GLN 71 N ? ? A MSE 70 A GLN 71 1_555 ? ? ? ? ? ? ? 1.327 ? covale6 covale ? ? A SER 99 C ? ? ? 1_555 A MSE 100 N ? ? A SER 99 A MSE 100 1_555 ? ? ? ? ? ? ? 1.334 ? covale7 covale ? ? A MSE 100 C ? ? ? 1_555 A GLY 101 N ? ? A MSE 100 A GLY 101 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale ? ? B MSE 1 C ? ? ? 1_555 B ASN 2 N ? ? B MSE 1 B ASN 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale9 covale ? ? B ALA 15 C ? ? ? 1_555 B MSE 16 N ? ? B ALA 15 B MSE 16 1_555 ? ? ? ? ? ? ? 1.329 ? covale10 covale ? ? B MSE 16 C ? ? ? 1_555 B ARG 17 N ? ? B MSE 16 B ARG 17 1_555 ? ? ? ? ? ? ? 1.331 ? covale11 covale ? ? B GLU 69 C ? ? ? 1_555 B MSE 70 N ? ? B GLU 69 B MSE 70 1_555 ? ? ? ? ? ? ? 1.331 ? covale12 covale ? ? B MSE 70 C ? ? ? 1_555 B GLN 71 N ? ? B MSE 70 B GLN 71 1_555 ? ? ? ? ? ? ? 1.330 ? covale13 covale ? ? B SER 99 C ? ? ? 1_555 B MSE 100 N ? ? B SER 99 B MSE 100 1_555 ? ? ? ? ? ? ? 1.332 ? covale14 covale ? ? B MSE 100 C ? ? ? 1_555 B GLY 101 N ? ? B MSE 100 B GLY 101 1_555 ? ? ? ? ? ? ? 1.330 ? metalc1 metalc ? ? B SER 34 OG ? ? ? 1_555 E NA . NA ? ? B SER 34 B NA 116 1_555 ? ? ? ? ? ? ? 2.717 ? metalc2 metalc ? ? C NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 116 A HOH 145 1_555 ? ? ? ? ? ? ? 2.808 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 MSE 100 A . ? MSE 100 A GLY 101 A ? GLY 101 A 1 -15.77 2 ALA 39 B . ? ALA 39 B GLY 40 B ? GLY 40 B 1 -11.83 3 GLY 101 B . ? GLY 101 B ARG 102 B ? ARG 102 B 1 -19.75 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE NA A 116' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE NA A 117' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NA B 116' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PEG B 117' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLY A 101 ? GLY A 101 . ? 4_455 ? 2 AC1 2 HOH G . ? HOH A 145 . ? 1_555 ? 3 AC2 3 SER A 34 ? SER A 34 . ? 1_555 ? 4 AC2 3 MSE B 1 ? MSE B 1 . ? 1_555 ? 5 AC2 3 ASN B 2 ? ASN B 2 . ? 1_555 ? 6 AC3 4 MSE A 1 ? MSE A 1 . ? 1_555 ? 7 AC3 4 ASN A 2 ? ASN A 2 . ? 1_555 ? 8 AC3 4 SER B 34 ? SER B 34 . ? 1_555 ? 9 AC3 4 VAL B 36 ? VAL B 36 . ? 1_555 ? 10 AC4 2 GLU B 35 ? GLU B 35 . ? 1_555 ? 11 AC4 2 HOH H . ? HOH B 152 . ? 1_555 ? # _database_PDB_matrix.entry_id 3FHW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3FHW _atom_sites.fract_transf_matrix[1][1] 0.018073 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015547 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013170 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 ASN 2 2 2 ASN ASN A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 CYS 13 13 13 CYS CYS A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 MSE 16 16 16 MSE MSE A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 HIS 41 41 ? ? ? A . n A 1 42 PRO 42 42 ? ? ? A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 MSE 70 70 70 MSE MSE A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 HIS 89 89 89 HIS HIS A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 ARG 95 95 95 ARG ARG A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 MSE 100 100 100 MSE MSE A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 ASP 103 103 ? ? ? A . n A 1 104 PRO 104 104 ? ? ? A . n A 1 105 LEU 105 105 ? ? ? A . n A 1 106 VAL 106 106 ? ? ? A . n A 1 107 GLY 107 107 ? ? ? A . n A 1 108 LEU 108 108 ? ? ? A . n A 1 109 GLU 109 109 ? ? ? A . n A 1 110 HIS 110 110 ? ? ? A . n A 1 111 HIS 111 111 ? ? ? A . n A 1 112 HIS 112 112 ? ? ? A . n A 1 113 HIS 113 113 ? ? ? A . n A 1 114 HIS 114 114 ? ? ? A . n A 1 115 HIS 115 115 ? ? ? A . n B 1 1 MSE 1 1 1 MSE MSE B . n B 1 2 ASN 2 2 2 ASN ASN B . n B 1 3 THR 3 3 3 THR THR B . n B 1 4 LEU 4 4 4 LEU LEU B . n B 1 5 GLU 5 5 5 GLU GLU B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 SER 7 7 7 SER SER B . n B 1 8 ALA 8 8 8 ALA ALA B . n B 1 9 ARG 9 9 9 ARG ARG B . n B 1 10 VAL 10 10 10 VAL VAL B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 CYS 13 13 13 CYS CYS B . n B 1 14 GLY 14 14 14 GLY GLY B . n B 1 15 ALA 15 15 15 ALA ALA B . n B 1 16 MSE 16 16 16 MSE MSE B . n B 1 17 ARG 17 17 17 ARG ARG B . n B 1 18 HIS 18 18 18 HIS HIS B . n B 1 19 THR 19 19 19 THR THR B . n B 1 20 PRO 20 20 20 PRO PRO B . n B 1 21 ALA 21 21 21 ALA ALA B . n B 1 22 GLY 22 22 22 GLY GLY B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 PRO 24 24 24 PRO PRO B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 GLU 27 27 27 GLU GLU B . n B 1 28 LEU 28 28 28 LEU LEU B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 VAL 31 31 31 VAL VAL B . n B 1 32 HIS 32 32 32 HIS HIS B . n B 1 33 GLU 33 33 33 GLU GLU B . n B 1 34 SER 34 34 34 SER SER B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 VAL 36 36 36 VAL VAL B . n B 1 37 VAL 37 37 37 VAL VAL B . n B 1 38 GLU 38 38 38 GLU GLU B . n B 1 39 ALA 39 39 39 ALA ALA B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 HIS 41 41 ? ? ? B . n B 1 42 PRO 42 42 ? ? ? B . n B 1 43 ARG 43 43 43 ARG ARG B . n B 1 44 ARG 44 44 44 ARG ARG B . n B 1 45 VAL 45 45 45 VAL VAL B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 ILE 49 49 49 ILE ILE B . n B 1 50 SER 50 50 50 SER SER B . n B 1 51 ALA 51 51 51 ALA ALA B . n B 1 52 VAL 52 52 52 VAL VAL B . n B 1 53 ALA 53 53 53 ALA ALA B . n B 1 54 LEU 54 54 54 LEU LEU B . n B 1 55 GLY 55 55 55 GLY GLY B . n B 1 56 ASP 56 56 56 ASP ASP B . n B 1 57 LEU 57 57 57 LEU LEU B . n B 1 58 ALA 58 58 58 ALA ALA B . n B 1 59 LEU 59 59 59 LEU LEU B . n B 1 60 LEU 60 60 60 LEU LEU B . n B 1 61 LEU 61 61 61 LEU LEU B . n B 1 62 ALA 62 62 62 ALA ALA B . n B 1 63 ASP 63 63 63 ASP ASP B . n B 1 64 THR 64 64 64 THR THR B . n B 1 65 PRO 65 65 65 PRO PRO B . n B 1 66 LEU 66 66 66 LEU LEU B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 THR 68 68 68 THR THR B . n B 1 69 GLU 69 69 69 GLU GLU B . n B 1 70 MSE 70 70 70 MSE MSE B . n B 1 71 GLN 71 71 71 GLN GLN B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 GLN 73 73 73 GLN GLN B . n B 1 74 GLY 74 74 74 GLY GLY B . n B 1 75 PHE 75 75 75 PHE PHE B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 ALA 77 77 77 ALA ALA B . n B 1 78 PRO 78 78 78 PRO PRO B . n B 1 79 ALA 79 79 79 ALA ALA B . n B 1 80 ARG 80 80 80 ARG ARG B . n B 1 81 LYS 81 81 81 LYS LYS B . n B 1 82 ASP 82 82 82 ASP ASP B . n B 1 83 SER 83 83 83 SER SER B . n B 1 84 VAL 84 84 84 VAL VAL B . n B 1 85 LYS 85 85 85 LYS LYS B . n B 1 86 VAL 86 86 86 VAL VAL B . n B 1 87 LYS 87 87 87 LYS LYS B . n B 1 88 LEU 88 88 88 LEU LEU B . n B 1 89 HIS 89 89 89 HIS HIS B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 GLN 91 91 91 GLN GLN B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ALA 93 93 93 ALA ALA B . n B 1 94 ARG 94 94 94 ARG ARG B . n B 1 95 ARG 95 95 95 ARG ARG B . n B 1 96 ILE 96 96 96 ILE ILE B . n B 1 97 ALA 97 97 97 ALA ALA B . n B 1 98 GLY 98 98 98 GLY GLY B . n B 1 99 SER 99 99 99 SER SER B . n B 1 100 MSE 100 100 100 MSE MSE B . n B 1 101 GLY 101 101 101 GLY GLY B . n B 1 102 ARG 102 102 102 ARG ARG B . n B 1 103 ASP 103 103 ? ? ? B . n B 1 104 PRO 104 104 ? ? ? B . n B 1 105 LEU 105 105 ? ? ? B . n B 1 106 VAL 106 106 ? ? ? B . n B 1 107 GLY 107 107 ? ? ? B . n B 1 108 LEU 108 108 ? ? ? B . n B 1 109 GLU 109 109 ? ? ? B . n B 1 110 HIS 110 110 ? ? ? B . n B 1 111 HIS 111 111 ? ? ? B . n B 1 112 HIS 112 112 ? ? ? B . n B 1 113 HIS 113 113 ? ? ? B . n B 1 114 HIS 114 114 ? ? ? B . n B 1 115 HIS 115 115 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 116 116 NA NA A . D 2 NA 1 117 117 NA NA A . E 2 NA 1 116 116 NA NA B . F 3 PEG 1 117 117 PEG PEG B . G 4 HOH 1 118 118 HOH HOH A . G 4 HOH 2 119 119 HOH HOH A . G 4 HOH 3 120 120 HOH HOH A . G 4 HOH 4 121 121 HOH HOH A . G 4 HOH 5 122 122 HOH HOH A . G 4 HOH 6 123 123 HOH HOH A . G 4 HOH 7 124 124 HOH HOH A . G 4 HOH 8 125 125 HOH HOH A . G 4 HOH 9 126 126 HOH HOH A . G 4 HOH 10 127 127 HOH HOH A . G 4 HOH 11 128 128 HOH HOH A . G 4 HOH 12 129 129 HOH HOH A . G 4 HOH 13 130 130 HOH HOH A . G 4 HOH 14 131 131 HOH HOH A . G 4 HOH 15 132 132 HOH HOH A . G 4 HOH 16 133 133 HOH HOH A . G 4 HOH 17 134 134 HOH HOH A . G 4 HOH 18 135 135 HOH HOH A . G 4 HOH 19 136 136 HOH HOH A . G 4 HOH 20 137 137 HOH HOH A . G 4 HOH 21 138 138 HOH HOH A . G 4 HOH 22 139 139 HOH HOH A . G 4 HOH 23 140 140 HOH HOH A . G 4 HOH 24 141 141 HOH HOH A . G 4 HOH 25 142 142 HOH HOH A . G 4 HOH 26 143 143 HOH HOH A . G 4 HOH 27 144 144 HOH HOH A . G 4 HOH 28 145 145 HOH HOH A . G 4 HOH 29 146 146 HOH HOH A . G 4 HOH 30 147 147 HOH HOH A . G 4 HOH 31 148 148 HOH HOH A . G 4 HOH 32 149 149 HOH HOH A . G 4 HOH 33 150 150 HOH HOH A . G 4 HOH 34 151 151 HOH HOH A . G 4 HOH 35 152 152 HOH HOH A . G 4 HOH 36 153 153 HOH HOH A . G 4 HOH 37 154 154 HOH HOH A . G 4 HOH 38 155 155 HOH HOH A . G 4 HOH 39 156 156 HOH HOH A . G 4 HOH 40 157 157 HOH HOH A . G 4 HOH 41 158 158 HOH HOH A . G 4 HOH 42 159 159 HOH HOH A . G 4 HOH 43 160 160 HOH HOH A . G 4 HOH 44 161 161 HOH HOH A . G 4 HOH 45 162 162 HOH HOH A . G 4 HOH 46 163 163 HOH HOH A . G 4 HOH 47 164 164 HOH HOH A . G 4 HOH 48 165 165 HOH HOH A . G 4 HOH 49 166 166 HOH HOH A . G 4 HOH 50 167 167 HOH HOH A . G 4 HOH 51 168 168 HOH HOH A . G 4 HOH 52 169 169 HOH HOH A . G 4 HOH 53 170 170 HOH HOH A . G 4 HOH 54 171 171 HOH HOH A . G 4 HOH 55 173 173 HOH HOH A . G 4 HOH 56 174 174 HOH HOH A . G 4 HOH 57 175 175 HOH HOH A . H 4 HOH 1 118 118 HOH HOH B . H 4 HOH 2 119 119 HOH HOH B . H 4 HOH 3 120 120 HOH HOH B . H 4 HOH 4 121 121 HOH HOH B . H 4 HOH 5 122 122 HOH HOH B . H 4 HOH 6 123 123 HOH HOH B . H 4 HOH 7 124 124 HOH HOH B . H 4 HOH 8 125 125 HOH HOH B . H 4 HOH 9 126 126 HOH HOH B . H 4 HOH 10 127 127 HOH HOH B . H 4 HOH 11 128 128 HOH HOH B . H 4 HOH 12 129 129 HOH HOH B . H 4 HOH 13 130 130 HOH HOH B . H 4 HOH 14 131 131 HOH HOH B . H 4 HOH 15 132 132 HOH HOH B . H 4 HOH 16 133 133 HOH HOH B . H 4 HOH 17 134 134 HOH HOH B . H 4 HOH 18 135 135 HOH HOH B . H 4 HOH 19 136 136 HOH HOH B . H 4 HOH 20 137 137 HOH HOH B . H 4 HOH 21 138 138 HOH HOH B . H 4 HOH 22 139 139 HOH HOH B . H 4 HOH 23 140 140 HOH HOH B . H 4 HOH 24 141 141 HOH HOH B . H 4 HOH 25 142 142 HOH HOH B . H 4 HOH 26 143 143 HOH HOH B . H 4 HOH 27 144 144 HOH HOH B . H 4 HOH 28 145 145 HOH HOH B . H 4 HOH 29 146 146 HOH HOH B . H 4 HOH 30 147 147 HOH HOH B . H 4 HOH 31 148 148 HOH HOH B . H 4 HOH 32 149 149 HOH HOH B . H 4 HOH 33 150 150 HOH HOH B . H 4 HOH 34 151 151 HOH HOH B . H 4 HOH 35 152 152 HOH HOH B . H 4 HOH 36 153 153 HOH HOH B . H 4 HOH 37 154 154 HOH HOH B . H 4 HOH 38 155 155 HOH HOH B . H 4 HOH 39 156 156 HOH HOH B . H 4 HOH 40 157 157 HOH HOH B . H 4 HOH 41 158 158 HOH HOH B . H 4 HOH 42 159 159 HOH HOH B . H 4 HOH 43 160 160 HOH HOH B . H 4 HOH 44 161 161 HOH HOH B . H 4 HOH 45 162 162 HOH HOH B . H 4 HOH 46 164 164 HOH HOH B . H 4 HOH 47 165 165 HOH HOH B . H 4 HOH 48 166 166 HOH HOH B . H 4 HOH 49 167 167 HOH HOH B . H 4 HOH 50 168 168 HOH HOH B . H 4 HOH 51 169 169 HOH HOH B . H 4 HOH 52 170 170 HOH HOH B . H 4 HOH 53 171 171 HOH HOH B . H 4 HOH 54 172 172 HOH HOH B . H 4 HOH 55 173 173 HOH HOH B . H 4 HOH 56 174 174 HOH HOH B . H 4 HOH 57 175 175 HOH HOH B . H 4 HOH 58 176 176 HOH HOH B . H 4 HOH 59 177 177 HOH HOH B . H 4 HOH 60 178 178 HOH HOH B . H 4 HOH 61 179 179 HOH HOH B . H 4 HOH 62 180 180 HOH HOH B . H 4 HOH 63 181 181 HOH HOH B . H 4 HOH 64 182 176 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 16 A MSE 16 ? MET SELENOMETHIONINE 3 A MSE 70 A MSE 70 ? MET SELENOMETHIONINE 4 A MSE 100 A MSE 100 ? MET SELENOMETHIONINE 5 B MSE 1 B MSE 1 ? MET SELENOMETHIONINE 6 B MSE 16 B MSE 16 ? MET SELENOMETHIONINE 7 B MSE 70 B MSE 70 ? MET SELENOMETHIONINE 8 B MSE 100 B MSE 100 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3230 ? 1 MORE -46 ? 1 'SSA (A^2)' 12060 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 118 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-30 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' Advisory 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 3 'Structure model' software # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 31.1109 _pdbx_refine_tls.origin_y 14.6530 _pdbx_refine_tls.origin_z 18.9432 _pdbx_refine_tls.T[1][1] -0.0723 _pdbx_refine_tls.T[2][2] -0.1525 _pdbx_refine_tls.T[3][3] -0.0343 _pdbx_refine_tls.T[1][2] 0.0017 _pdbx_refine_tls.T[1][3] 0.0056 _pdbx_refine_tls.T[2][3] -0.0018 _pdbx_refine_tls.L[1][1] 1.4752 _pdbx_refine_tls.L[2][2] 0.5986 _pdbx_refine_tls.L[3][3] 3.4684 _pdbx_refine_tls.L[1][2] -0.0024 _pdbx_refine_tls.L[1][3] 0.2561 _pdbx_refine_tls.L[2][3] -0.0285 _pdbx_refine_tls.S[1][1] 0.0563 _pdbx_refine_tls.S[2][2] -0.0172 _pdbx_refine_tls.S[3][3] -0.0391 _pdbx_refine_tls.S[1][2] 0.0042 _pdbx_refine_tls.S[1][3] 0.1196 _pdbx_refine_tls.S[2][3] 0.0001 _pdbx_refine_tls.S[2][1] 0.0077 _pdbx_refine_tls.S[3][1] -0.1320 _pdbx_refine_tls.S[3][2] 0.0060 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 B 118 B 182 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 118 A 175 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 B 116 B 117 ? . . . . ? 'X-RAY DIFFRACTION' 4 1 A 116 A 117 ? . . . . ? 'X-RAY DIFFRACTION' 5 1 B 1 B 102 ? . . . . ? 'X-RAY DIFFRACTION' 6 1 A 1 A 102 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 SnB phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 2 ? ? -162.84 90.19 2 1 ASP A 82 ? ? 81.10 9.41 3 1 MSE A 100 ? ? -56.74 -74.65 4 1 ASN B 2 ? ? -165.22 87.21 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS 41 ? A HIS 41 2 1 Y 1 A PRO 42 ? A PRO 42 3 1 Y 1 A ASP 103 ? A ASP 103 4 1 Y 1 A PRO 104 ? A PRO 104 5 1 Y 1 A LEU 105 ? A LEU 105 6 1 Y 1 A VAL 106 ? A VAL 106 7 1 Y 1 A GLY 107 ? A GLY 107 8 1 Y 1 A LEU 108 ? A LEU 108 9 1 Y 1 A GLU 109 ? A GLU 109 10 1 Y 1 A HIS 110 ? A HIS 110 11 1 Y 1 A HIS 111 ? A HIS 111 12 1 Y 1 A HIS 112 ? A HIS 112 13 1 Y 1 A HIS 113 ? A HIS 113 14 1 Y 1 A HIS 114 ? A HIS 114 15 1 Y 1 A HIS 115 ? A HIS 115 16 1 Y 1 B HIS 41 ? B HIS 41 17 1 Y 1 B PRO 42 ? B PRO 42 18 1 Y 1 B ASP 103 ? B ASP 103 19 1 Y 1 B PRO 104 ? B PRO 104 20 1 Y 1 B LEU 105 ? B LEU 105 21 1 Y 1 B VAL 106 ? B VAL 106 22 1 Y 1 B GLY 107 ? B GLY 107 23 1 Y 1 B LEU 108 ? B LEU 108 24 1 Y 1 B GLU 109 ? B GLU 109 25 1 Y 1 B HIS 110 ? B HIS 110 26 1 Y 1 B HIS 111 ? B HIS 111 27 1 Y 1 B HIS 112 ? B HIS 112 28 1 Y 1 B HIS 113 ? B HIS 113 29 1 Y 1 B HIS 114 ? B HIS 114 30 1 Y 1 B HIS 115 ? B HIS 115 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'DI(HYDROXYETHYL)ETHER' PEG 4 water HOH #