HEADER OXIDOREDUCTASE 12-DEC-08 3FIM TITLE CRYSTAL STRUCTURE OF ARYL-ALCOHOL-OXIDASE FROM PLEUROTUS ERYINGII CAVEAT 3FIM CHIRALITY ERROR AT CA CENTER OF VAL B 7 AND VAL B 8. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL-ALCOHOL OXIDASE; COMPND 3 CHAIN: B; COMPND 4 EC: 1.1.3.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLEUROTUS ERYNGII; SOURCE 3 ORGANISM_COMMON: BOLETUS OF THE STEPPES; SOURCE 4 ORGANISM_TAXID: 5323; SOURCE 5 GENE: AAO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFLAG1 KEYWDS AAO, LIGNIN DEGRADATION, PLEUROTUS ERYNGII, OXIDOREDUCTASE, KEYWDS 2 FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.S.FERNANDEZ REVDAT 4 13-NOV-24 3FIM 1 REMARK REVDAT 3 13-JUL-11 3FIM 1 VERSN REVDAT 2 19-JAN-11 3FIM 1 JRNL REVDAT 1 03-NOV-09 3FIM 0 JRNL AUTH I.S.FERNANDEZ,F.J.RUIZ-DUENAS,E.SANTILLANA,P.FERREIRA, JRNL AUTH 2 M.J.MARTINEZ,A.T.MARTINEZ,A.ROMERO JRNL TITL NOVEL STRUCTURAL FEATURES IN THE GMC FAMILY OF JRNL TITL 2 OXIDOREDUCTASES REVEALED BY THE CRYSTAL STRUCTURE OF FUNGAL JRNL TITL 3 ARYL-ALCOHOL OXIDASE JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 1196 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19923715 JRNL DOI 10.1107/S0907444909035860 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 49123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2995 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3783 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 172 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : -0.04000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.148 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.365 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4464 ; 0.035 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6117 ; 2.693 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 564 ; 7.468 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;35.121 ;24.577 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 644 ;15.252 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;22.508 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 684 ; 0.262 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3492 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1842 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2955 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 206 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.110 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.057 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2956 ; 1.417 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4565 ; 2.183 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1829 ; 3.804 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1552 ; 5.335 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 0 REMARK 3 RESIDUE RANGE : B 2 B 566 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2440 67.8280 -10.4020 REMARK 3 T TENSOR REMARK 3 T11: -0.1767 T22: 0.0053 REMARK 3 T33: -0.1550 T12: -0.0225 REMARK 3 T13: -0.0593 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.5361 L22: 0.8837 REMARK 3 L33: 0.8675 L12: 0.1731 REMARK 3 L13: 0.0986 L23: -0.0883 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: -0.0960 S13: 0.0558 REMARK 3 S21: 0.0075 S22: -0.0384 S23: 0.0107 REMARK 3 S31: 0.0653 S32: -0.0075 S33: 0.0541 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-03; 18-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 110; 110 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BM16; BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.85; 0.978 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56141 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390 REMARK 200 RESOLUTION RANGE LOW (A) : 37.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 37.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M LITHIUM SULFATE, 0.1M BIS-TRIS REMARK 280 PROPANE, PH7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.46900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.93800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.46900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 106.93800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.46900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 106.93800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.46900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 106.93800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 8 CA GLY B 9 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY B 9 N GLY B 9 CA 0.344 REMARK 500 ASN B 40 CB ASN B 40 CG 0.156 REMARK 500 ASN B 40 C ASN B 40 O 0.131 REMARK 500 PRO B 55 C PRO B 55 O 0.159 REMARK 500 ASN B 56 N ASN B 56 CA 0.191 REMARK 500 ILE B 58 CB ILE B 58 CG2 0.196 REMARK 500 TYR B 63 CG TYR B 63 CD1 0.089 REMARK 500 ASN B 116 N ASN B 116 CA 0.322 REMARK 500 ASN B 116 CB ASN B 116 CG 0.207 REMARK 500 TRP B 196 CE3 TRP B 196 CZ3 0.120 REMARK 500 TYR B 251 CG TYR B 251 CD1 0.085 REMARK 500 TRP B 396 CG TRP B 396 CD2 -0.113 REMARK 500 TRP B 396 CG TRP B 396 CD1 0.188 REMARK 500 TRP B 396 CE2 TRP B 396 CZ2 -0.109 REMARK 500 TRP B 396 CE2 TRP B 396 CD2 0.122 REMARK 500 TRP B 396 CE3 TRP B 396 CZ3 -0.205 REMARK 500 TRP B 396 CZ3 TRP B 396 CH2 0.118 REMARK 500 GLU B 446 CG GLU B 446 CD 0.095 REMARK 500 ASP B 470 CB ASP B 470 CG 0.134 REMARK 500 PHE B 501 CZ PHE B 501 CE2 0.117 REMARK 500 TRP B 516 CD2 TRP B 516 CE3 0.091 REMARK 500 TRP B 516 CH2 TRP B 516 CZ2 0.117 REMARK 500 LYS B 556 CD LYS B 556 CE -0.178 REMARK 500 GLN B 557 CA GLN B 557 CB 0.146 REMARK 500 GLN B 557 CB GLN B 557 CG 0.246 REMARK 500 GLN B 557 CD GLN B 557 NE2 0.178 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 6 CA - C - N ANGL. DEV. = 17.3 DEGREES REMARK 500 VAL B 6 O - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 VAL B 7 C - N - CA ANGL. DEV. = 28.1 DEGREES REMARK 500 VAL B 8 CA - C - N ANGL. DEV. = 13.0 DEGREES REMARK 500 VAL B 8 O - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 GLY B 9 C - N - CA ANGL. DEV. = -31.9 DEGREES REMARK 500 ASP B 24 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ASP B 24 CB - CG - OD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 LEU B 53 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 PRO B 55 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 ASN B 56 C - N - CA ANGL. DEV. = -29.9 DEGREES REMARK 500 ARG B 80 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 80 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 82 CG - CD - NE ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG B 82 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 82 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 MET B 83 CG - SD - CE ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG B 105 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 TRP B 115 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 ASN B 116 C - N - CA ANGL. DEV. = -20.6 DEGREES REMARK 500 ASN B 116 N - CA - CB ANGL. DEV. = 17.8 DEGREES REMARK 500 ASN B 151 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 LEU B 158 CA - CB - CG ANGL. DEV. = -17.3 DEGREES REMARK 500 LEU B 158 CB - CG - CD2 ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG B 168 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 MET B 186 CG - SD - CE ANGL. DEV. = -10.6 DEGREES REMARK 500 ARG B 247 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 CYS B 248 CA - CB - SG ANGL. DEV. = -13.1 DEGREES REMARK 500 VAL B 262 CB - CA - C ANGL. DEV. = -11.4 DEGREES REMARK 500 LEU B 314 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG B 333 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 333 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 349 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 365 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TRP B 396 CH2 - CZ2 - CE2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 403 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG B 403 NE - CZ - NH1 ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG B 403 NE - CZ - NH2 ANGL. DEV. = -10.8 DEGREES REMARK 500 MET B 452 CG - SD - CE ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG B 461 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP B 485 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 GLN B 557 N - CA - CB ANGL. DEV. = 15.0 DEGREES REMARK 500 GLN B 557 CA - CB - CG ANGL. DEV. = 21.8 DEGREES REMARK 500 GLN B 557 CB - CG - CD ANGL. DEV. = 17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 7 55.11 83.36 REMARK 500 VAL B 8 -91.45 -69.59 REMARK 500 MET B 93 -3.57 71.40 REMARK 500 ASN B 116 120.51 105.58 REMARK 500 ASP B 185 127.91 -171.78 REMARK 500 SER B 219 -6.01 -58.89 REMARK 500 LYS B 266 -76.69 -95.99 REMARK 500 ALA B 318 117.72 -163.86 REMARK 500 ASN B 394 42.80 -74.90 REMARK 500 PHE B 471 -65.41 -127.98 REMARK 500 ASN B 498 -140.12 -144.85 REMARK 500 PHE B 501 33.91 81.49 REMARK 500 LEU B 523 16.26 81.35 REMARK 500 ASP B 535 -173.40 -173.90 REMARK 500 ALA B 545 140.58 -178.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 6 VAL B 7 30.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 0 DBREF 3FIM B 1 566 UNP O94219 O94219_PLEER 28 593 SEQRES 1 B 566 ALA ASP PHE ASP TYR VAL VAL VAL GLY ALA GLY ASN ALA SEQRES 2 B 566 GLY ASN VAL VAL ALA ALA ARG LEU THR GLU ASP PRO ASP SEQRES 3 B 566 VAL SER VAL LEU VAL LEU GLU ALA GLY VAL SER ASP GLU SEQRES 4 B 566 ASN VAL LEU GLY ALA GLU ALA PRO LEU LEU ALA PRO GLY SEQRES 5 B 566 LEU VAL PRO ASN SER ILE PHE ASP TRP ASN TYR THR THR SEQRES 6 B 566 THR ALA GLN ALA GLY TYR ASN GLY ARG SER ILE ALA TYR SEQRES 7 B 566 PRO ARG GLY ARG MET LEU GLY GLY SER SER SER VAL HIS SEQRES 8 B 566 TYR MET VAL MET MET ARG GLY SER THR GLU ASP PHE ASP SEQRES 9 B 566 ARG TYR ALA ALA VAL THR GLY ASP GLU GLY TRP ASN TRP SEQRES 10 B 566 ASP ASN ILE GLN GLN PHE VAL ARG LYS ASN GLU MET VAL SEQRES 11 B 566 VAL PRO PRO ALA ASP ASN HIS ASN THR SER GLY GLU PHE SEQRES 12 B 566 ILE PRO ALA VAL HIS GLY THR ASN GLY SER VAL SER ILE SEQRES 13 B 566 SER LEU PRO GLY PHE PRO THR PRO LEU ASP ASP ARG VAL SEQRES 14 B 566 LEU ALA THR THR GLN GLU GLN SER GLU GLU PHE PHE PHE SEQRES 15 B 566 ASN PRO ASP MET GLY THR GLY HIS PRO LEU GLY ILE SER SEQRES 16 B 566 TRP SER ILE ALA SER VAL GLY ASN GLY GLN ARG SER SER SEQRES 17 B 566 SER SER THR ALA TYR LEU ARG PRO ALA GLN SER ARG PRO SEQRES 18 B 566 ASN LEU SER VAL LEU ILE ASN ALA GLN VAL THR LYS LEU SEQRES 19 B 566 VAL ASN SER GLY THR THR ASN GLY LEU PRO ALA PHE ARG SEQRES 20 B 566 CYS VAL GLU TYR ALA GLU GLN GLU GLY ALA PRO THR THR SEQRES 21 B 566 THR VAL CYS ALA LYS LYS GLU VAL VAL LEU SER ALA GLY SEQRES 22 B 566 SER VAL GLY THR PRO ILE LEU LEU GLN LEU SER GLY ILE SEQRES 23 B 566 GLY ASP GLU ASN ASP LEU SER SER VAL GLY ILE ASP THR SEQRES 24 B 566 ILE VAL ASN ASN PRO SER VAL GLY ARG ASN LEU SER ASP SEQRES 25 B 566 HIS LEU LEU LEU PRO ALA ALA PHE PHE VAL ASN SER ASN SEQRES 26 B 566 GLN THR PHE ASP ASN ILE PHE ARG ASP SER SER GLU PHE SEQRES 27 B 566 ASN VAL ASP LEU ASP GLN TRP THR ASN THR ARG THR GLY SEQRES 28 B 566 PRO LEU THR ALA LEU ILE ALA ASN HIS LEU ALA TRP LEU SEQRES 29 B 566 ARG LEU PRO SER ASN SER SER ILE PHE GLN THR PHE PRO SEQRES 30 B 566 ASP PRO ALA ALA GLY PRO ASN SER ALA HIS TRP GLU THR SEQRES 31 B 566 ILE PHE SER ASN GLN TRP PHE HIS PRO ALA ILE PRO ARG SEQRES 32 B 566 PRO ASP THR GLY SER PHE MET SER VAL THR ASN ALA LEU SEQRES 33 B 566 ILE SER PRO VAL ALA ARG GLY ASP ILE LYS LEU ALA THR SEQRES 34 B 566 SER ASN PRO PHE ASP LYS PRO LEU ILE ASN PRO GLN TYR SEQRES 35 B 566 LEU SER THR GLU PHE ASP ILE PHE THR MET ILE GLN ALA SEQRES 36 B 566 VAL LYS SER ASN LEU ARG PHE LEU SER GLY GLN ALA TRP SEQRES 37 B 566 ALA ASP PHE VAL ILE ARG PRO PHE ASP PRO ARG LEU ARG SEQRES 38 B 566 ASP PRO THR ASP ASP ALA ALA ILE GLU SER TYR ILE ARG SEQRES 39 B 566 ASP ASN ALA ASN THR ILE PHE HIS PRO VAL GLY THR ALA SEQRES 40 B 566 SER MET SER PRO ARG GLY ALA SER TRP GLY VAL VAL ASP SEQRES 41 B 566 PRO ASP LEU LYS VAL LYS GLY VAL ASP GLY LEU ARG ILE SEQRES 42 B 566 VAL ASP GLY SER ILE LEU PRO PHE ALA PRO ASN ALA HIS SEQRES 43 B 566 THR GLN GLY PRO ILE TYR LEU VAL GLY LYS GLN GLY ALA SEQRES 44 B 566 ASP LEU ILE LYS ALA ASP GLN HET FAD B 0 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *225(H2 O) HELIX 1 1 ALA B 13 THR B 22 1 10 HELIX 2 2 VAL B 41 GLU B 45 5 5 HELIX 3 3 ALA B 46 VAL B 54 5 9 HELIX 4 4 GLN B 68 ASN B 72 5 5 HELIX 5 5 GLY B 85 VAL B 90 5 6 HELIX 6 6 SER B 99 GLY B 111 1 13 HELIX 7 7 ASN B 116 ASN B 127 1 12 HELIX 8 8 ILE B 144 HIS B 148 5 5 HELIX 9 9 PRO B 164 GLN B 176 1 13 HELIX 10 10 GLN B 176 PHE B 181 1 6 HELIX 11 11 ASP B 185 GLY B 189 5 5 HELIX 12 12 SER B 208 TYR B 213 1 6 HELIX 13 13 TYR B 213 GLN B 218 1 6 HELIX 14 14 ALA B 272 SER B 284 1 13 HELIX 15 15 ASP B 288 VAL B 295 1 8 HELIX 16 16 PHE B 328 ARG B 333 5 6 HELIX 17 17 ASP B 334 ARG B 349 1 16 HELIX 18 18 GLY B 351 ALA B 355 5 5 HELIX 19 19 SER B 370 THR B 375 5 6 HELIX 20 20 THR B 445 SER B 464 1 20 HELIX 21 21 GLY B 465 ALA B 469 5 5 HELIX 22 22 ASP B 477 ARG B 481 5 5 HELIX 23 23 ASP B 485 ALA B 497 1 13 HELIX 24 24 ASP B 535 LEU B 539 5 5 HELIX 25 25 THR B 547 ASP B 565 1 19 SHEET 1 A 6 LEU B 223 LEU B 226 0 SHEET 2 A 6 VAL B 29 LEU B 32 1 N VAL B 31 O LEU B 226 SHEET 3 A 6 PHE B 3 VAL B 7 1 N VAL B 7 O LEU B 32 SHEET 4 A 6 THR B 260 LEU B 270 1 O LYS B 265 N PHE B 3 SHEET 5 A 6 CYS B 248 ALA B 252 -1 N TYR B 251 O THR B 260 SHEET 6 A 6 GLN B 230 VAL B 235 -1 N GLN B 230 O ALA B 252 SHEET 1 B 5 LEU B 223 LEU B 226 0 SHEET 2 B 5 VAL B 29 LEU B 32 1 N VAL B 31 O LEU B 226 SHEET 3 B 5 PHE B 3 VAL B 7 1 N VAL B 7 O LEU B 32 SHEET 4 B 5 THR B 260 LEU B 270 1 O LYS B 265 N PHE B 3 SHEET 5 B 5 LEU B 531 ILE B 533 1 O ARG B 532 N LEU B 270 SHEET 1 C 2 GLU B 128 VAL B 130 0 SHEET 2 C 2 VAL B 154 ILE B 156 1 O ILE B 156 N MET B 129 SHEET 1 D 6 GLY B 193 TRP B 196 0 SHEET 2 D 6 HIS B 360 LEU B 364 -1 O TRP B 363 N GLY B 193 SHEET 3 D 6 TRP B 388 SER B 393 -1 O TRP B 388 N LEU B 364 SHEET 4 D 6 PHE B 409 LEU B 416 -1 O THR B 413 N ILE B 391 SHEET 5 D 6 ALA B 319 VAL B 322 -1 N PHE B 320 O MET B 410 SHEET 6 D 6 VAL B 472 PRO B 475 -1 O ILE B 473 N PHE B 321 SHEET 1 E 6 GLY B 193 TRP B 196 0 SHEET 2 E 6 HIS B 360 LEU B 364 -1 O TRP B 363 N GLY B 193 SHEET 3 E 6 TRP B 388 SER B 393 -1 O TRP B 388 N LEU B 364 SHEET 4 E 6 PHE B 409 LEU B 416 -1 O THR B 413 N ILE B 391 SHEET 5 E 6 LEU B 314 LEU B 316 -1 N LEU B 316 O ASN B 414 SHEET 6 E 6 ASN B 498 THR B 499 -1 O ASN B 498 N LEU B 315 SHEET 1 F 2 VAL B 201 GLY B 202 0 SHEET 2 F 2 GLN B 205 ARG B 206 -1 O GLN B 205 N GLY B 202 SHEET 1 G 2 GLY B 238 THR B 240 0 SHEET 2 G 2 LEU B 243 ALA B 245 -1 O ALA B 245 N GLY B 238 SHEET 1 H 2 ILE B 286 GLY B 287 0 SHEET 2 H 2 VAL B 301 ASN B 302 1 O VAL B 301 N GLY B 287 SHEET 1 I 2 ASP B 424 LYS B 426 0 SHEET 2 I 2 LEU B 437 ASN B 439 -1 O LEU B 437 N LYS B 426 SSBOND 1 CYS B 248 CYS B 263 1555 1555 2.23 CISPEP 1 VAL B 54 PRO B 55 0 -1.11 SITE 1 AC1 39 GLY B 9 GLY B 11 ASN B 12 ALA B 13 SITE 2 AC1 39 LEU B 32 GLU B 33 ALA B 34 TRP B 61 SITE 3 AC1 39 PRO B 79 GLY B 81 ARG B 82 MET B 83 SITE 4 AC1 39 GLY B 86 SER B 87 HIS B 91 TYR B 92 SITE 5 AC1 39 MET B 93 VAL B 94 ALA B 229 VAL B 231 SITE 6 AC1 39 SER B 271 ALA B 272 GLY B 273 PHE B 501 SITE 7 AC1 39 HIS B 502 ASP B 535 GLY B 536 HIS B 546 SITE 8 AC1 39 THR B 547 GLN B 548 ILE B 551 HOH B 580 SITE 9 AC1 39 HOH B 582 HOH B 583 HOH B 586 HOH B 587 SITE 10 AC1 39 HOH B 589 HOH B 590 HOH B 592 CRYST1 180.226 180.226 160.407 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005549 0.003203 0.000000 0.00000 SCALE2 0.000000 0.006407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006234 0.00000