HEADER BIOSYNTHETIC PROTEIN 15-DEC-08 3FJS TITLE CRYSTAL STRUCTURE OF A PUTATIVE BIOSYNTHETIC PROTEIN WITH RMLC-LIKE TITLE 2 CUPIN FOLD (REUT_B4087) FROM RALSTONIA EUTROPHA JMP134 AT 1.90 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN WITH RMLC-LIKE CUPIN FOLD; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RALSTONIA EUTROPHA JMP134; SOURCE 3 ORGANISM_COMMON: ALCALIGENES EUTROPHUS; SOURCE 4 ORGANISM_TAXID: 264198; SOURCE 5 GENE: REUT_B4087, YP_298287.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS RMLC-LIKE CUPIN FOLD, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3FJS 1 SEQADV REVDAT 5 24-JUL-19 3FJS 1 REMARK LINK REVDAT 4 01-NOV-17 3FJS 1 REMARK REVDAT 3 13-JUL-11 3FJS 1 VERSN REVDAT 2 28-JUL-10 3FJS 1 HEADER TITLE KEYWDS REVDAT 1 13-JAN-09 3FJS 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION WITH JRNL TITL 2 RMLC-LIKE CUPIN FOLD (YP_298287.1) FROM RALSTONIA EUTROPHA JRNL TITL 3 JMP134 AT 1.90 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1601 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.2040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3037 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.912 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3201 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2088 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4372 ; 1.782 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5201 ; 1.337 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 453 ; 3.975 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;38.368 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 561 ;11.632 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.507 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3595 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 553 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 434 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2127 ; 0.153 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1514 ; 0.143 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1850 ; 0.074 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 198 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.063 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2327 ; 1.458 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 888 ; 0.264 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3420 ; 2.058 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1113 ; 4.077 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 932 ; 5.713 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 8 A 108 6 REMARK 3 1 B 8 B 108 6 REMARK 3 1 C 8 C 108 6 REMARK 3 1 D 8 D 108 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 62.0540 35.6930 17.0430 REMARK 3 T TENSOR REMARK 3 T11: -0.0415 T22: 0.0032 REMARK 3 T33: -0.0260 T12: 0.0041 REMARK 3 T13: -0.0092 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.8583 L22: 1.1951 REMARK 3 L33: 1.0221 L12: 0.3889 REMARK 3 L13: -0.0330 L23: -0.4196 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.0867 S13: -0.1371 REMARK 3 S21: 0.0224 S22: -0.0560 S23: -0.1526 REMARK 3 S31: 0.0492 S32: 0.1158 S33: 0.0194 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 51.3380 46.4990 7.1690 REMARK 3 T TENSOR REMARK 3 T11: -0.0323 T22: -0.0149 REMARK 3 T33: -0.0262 T12: 0.0087 REMARK 3 T13: -0.0162 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.0461 L22: 1.1751 REMARK 3 L33: 0.8925 L12: 0.5163 REMARK 3 L13: 0.4223 L23: 0.0264 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.0086 S13: 0.1701 REMARK 3 S21: -0.1054 S22: -0.0019 S23: 0.1781 REMARK 3 S31: -0.0941 S32: -0.0240 S33: 0.0336 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 113 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9080 22.3780 2.5050 REMARK 3 T TENSOR REMARK 3 T11: -0.0208 T22: -0.0053 REMARK 3 T33: 0.0824 T12: -0.0110 REMARK 3 T13: -0.0624 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 0.8716 L22: 1.5218 REMARK 3 L33: 0.3490 L12: 0.9936 REMARK 3 L13: -0.0997 L23: -0.0832 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: 0.2687 S13: -0.2606 REMARK 3 S21: -0.1586 S22: 0.0663 S23: 0.1102 REMARK 3 S31: 0.0662 S32: -0.0647 S33: -0.0983 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 7 D 108 REMARK 3 ORIGIN FOR THE GROUP (A): 38.4480 16.1090 19.0180 REMARK 3 T TENSOR REMARK 3 T11: -0.0624 T22: -0.0250 REMARK 3 T33: 0.1342 T12: -0.0361 REMARK 3 T13: -0.0350 T23: 0.0883 REMARK 3 L TENSOR REMARK 3 L11: 4.5643 L22: 1.1257 REMARK 3 L33: 1.9691 L12: -1.0335 REMARK 3 L13: 1.2056 L23: -0.5264 REMARK 3 S TENSOR REMARK 3 S11: 0.1278 S12: -0.3826 S13: -0.7879 REMARK 3 S21: 0.0699 S22: 0.1335 S23: 0.3754 REMARK 3 S31: 0.1672 S32: -0.0971 S33: -0.2613 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 4 REMARK 4 3FJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97876,0.97843 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31808 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 6.1980 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : 0.50900 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70.0000% MPD, 0.1M HEPES PH 7.5, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.55550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.67200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.01350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.67200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.55550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.01350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 109 REMARK 465 ARG A 110 REMARK 465 GLY A 111 REMARK 465 GLY A 112 REMARK 465 SER A 113 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 LEU B 3 REMARK 465 ASP B 109 REMARK 465 ARG B 110 REMARK 465 GLY B 111 REMARK 465 GLY B 112 REMARK 465 SER B 113 REMARK 465 GLY C 0 REMARK 465 MSE C 1 REMARK 465 SER C 2 REMARK 465 LEU C 3 REMARK 465 PRO C 4 REMARK 465 HIS C 5 REMARK 465 LEU C 6 REMARK 465 GLY D 0 REMARK 465 MSE D 1 REMARK 465 SER D 2 REMARK 465 LEU D 3 REMARK 465 PRO D 4 REMARK 465 HIS D 5 REMARK 465 LEU D 6 REMARK 465 ASP D 109 REMARK 465 ARG D 110 REMARK 465 GLY D 111 REMARK 465 GLY D 112 REMARK 465 SER D 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 34 NE CZ NH1 NH2 REMARK 470 LYS C 31 CG CD CE NZ REMARK 470 ARG C 34 CD NE CZ NH1 NH2 REMARK 470 HIS D 33 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 39 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG C 39 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG D 76 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391247 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3FJS A 1 113 UNP Q46TU1 Q46TU1_RALEJ 1 113 DBREF 3FJS B 1 113 UNP Q46TU1 Q46TU1_RALEJ 1 113 DBREF 3FJS C 1 113 UNP Q46TU1 Q46TU1_RALEJ 1 113 DBREF 3FJS D 1 113 UNP Q46TU1 Q46TU1_RALEJ 1 113 SEQADV 3FJS GLY A 0 UNP Q46TU1 EXPRESSION TAG SEQADV 3FJS GLY B 0 UNP Q46TU1 EXPRESSION TAG SEQADV 3FJS GLY C 0 UNP Q46TU1 EXPRESSION TAG SEQADV 3FJS GLY D 0 UNP Q46TU1 EXPRESSION TAG SEQRES 1 A 114 GLY MSE SER LEU PRO HIS LEU SER SER GLY GLU VAL ALA SEQRES 2 A 114 SER VAL LEU PRO LEU GLY LYS GLN LEU THR GLN THR PRO SEQRES 3 A 114 SER ALA ALA LEU PHE LYS GLU HIS ARG LEU GLU VAL MSE SEQRES 4 A 114 ARG MSE VAL LEU PRO ALA GLY LYS GLN VAL GLY SER HIS SEQRES 5 A 114 SER VAL ALA GLY PRO SER THR ILE GLN CYS LEU GLU GLY SEQRES 6 A 114 GLU VAL GLU ILE GLY VAL ASP GLY ALA GLN ARG ARG LEU SEQRES 7 A 114 HIS GLN GLY ASP LEU LEU TYR LEU GLY ALA GLY ALA ALA SEQRES 8 A 114 HIS ASP VAL ASN ALA ILE THR ASN THR SER LEU LEU VAL SEQRES 9 A 114 THR VAL VAL LEU VAL ASP ARG GLY GLY SER SEQRES 1 B 114 GLY MSE SER LEU PRO HIS LEU SER SER GLY GLU VAL ALA SEQRES 2 B 114 SER VAL LEU PRO LEU GLY LYS GLN LEU THR GLN THR PRO SEQRES 3 B 114 SER ALA ALA LEU PHE LYS GLU HIS ARG LEU GLU VAL MSE SEQRES 4 B 114 ARG MSE VAL LEU PRO ALA GLY LYS GLN VAL GLY SER HIS SEQRES 5 B 114 SER VAL ALA GLY PRO SER THR ILE GLN CYS LEU GLU GLY SEQRES 6 B 114 GLU VAL GLU ILE GLY VAL ASP GLY ALA GLN ARG ARG LEU SEQRES 7 B 114 HIS GLN GLY ASP LEU LEU TYR LEU GLY ALA GLY ALA ALA SEQRES 8 B 114 HIS ASP VAL ASN ALA ILE THR ASN THR SER LEU LEU VAL SEQRES 9 B 114 THR VAL VAL LEU VAL ASP ARG GLY GLY SER SEQRES 1 C 114 GLY MSE SER LEU PRO HIS LEU SER SER GLY GLU VAL ALA SEQRES 2 C 114 SER VAL LEU PRO LEU GLY LYS GLN LEU THR GLN THR PRO SEQRES 3 C 114 SER ALA ALA LEU PHE LYS GLU HIS ARG LEU GLU VAL MSE SEQRES 4 C 114 ARG MSE VAL LEU PRO ALA GLY LYS GLN VAL GLY SER HIS SEQRES 5 C 114 SER VAL ALA GLY PRO SER THR ILE GLN CYS LEU GLU GLY SEQRES 6 C 114 GLU VAL GLU ILE GLY VAL ASP GLY ALA GLN ARG ARG LEU SEQRES 7 C 114 HIS GLN GLY ASP LEU LEU TYR LEU GLY ALA GLY ALA ALA SEQRES 8 C 114 HIS ASP VAL ASN ALA ILE THR ASN THR SER LEU LEU VAL SEQRES 9 C 114 THR VAL VAL LEU VAL ASP ARG GLY GLY SER SEQRES 1 D 114 GLY MSE SER LEU PRO HIS LEU SER SER GLY GLU VAL ALA SEQRES 2 D 114 SER VAL LEU PRO LEU GLY LYS GLN LEU THR GLN THR PRO SEQRES 3 D 114 SER ALA ALA LEU PHE LYS GLU HIS ARG LEU GLU VAL MSE SEQRES 4 D 114 ARG MSE VAL LEU PRO ALA GLY LYS GLN VAL GLY SER HIS SEQRES 5 D 114 SER VAL ALA GLY PRO SER THR ILE GLN CYS LEU GLU GLY SEQRES 6 D 114 GLU VAL GLU ILE GLY VAL ASP GLY ALA GLN ARG ARG LEU SEQRES 7 D 114 HIS GLN GLY ASP LEU LEU TYR LEU GLY ALA GLY ALA ALA SEQRES 8 D 114 HIS ASP VAL ASN ALA ILE THR ASN THR SER LEU LEU VAL SEQRES 9 D 114 THR VAL VAL LEU VAL ASP ARG GLY GLY SER MODRES 3FJS MSE A 38 MET SELENOMETHIONINE MODRES 3FJS MSE A 40 MET SELENOMETHIONINE MODRES 3FJS MSE B 38 MET SELENOMETHIONINE MODRES 3FJS MSE B 40 MET SELENOMETHIONINE MODRES 3FJS MSE C 38 MET SELENOMETHIONINE MODRES 3FJS MSE C 40 MET SELENOMETHIONINE MODRES 3FJS MSE D 38 MET SELENOMETHIONINE MODRES 3FJS MSE D 40 MET SELENOMETHIONINE HET MSE A 38 13 HET MSE A 40 13 HET MSE B 38 13 HET MSE B 40 13 HET MSE C 38 13 HET MSE C 40 13 HET MSE D 38 8 HET MSE D 40 13 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 5 HOH *233(H2 O) HELIX 1 1 LEU A 17 THR A 24 5 8 HELIX 2 2 LEU B 17 THR B 24 5 8 HELIX 3 3 LEU C 17 THR C 24 5 8 HELIX 4 4 LEU D 17 THR D 24 5 8 SHEET 1 A 6 VAL A 11 SER A 13 0 SHEET 2 A 6 ASP B 81 LEU B 85 -1 O LEU B 82 N ALA A 12 SHEET 3 A 6 SER B 57 GLU B 63 -1 N ILE B 59 O LEU B 83 SHEET 4 A 6 THR B 99 VAL B 106 -1 O LEU B 102 N GLN B 60 SHEET 5 A 6 LEU B 35 LEU B 42 -1 N LEU B 42 O THR B 99 SHEET 6 A 6 ALA B 27 GLU B 32 -1 N LEU B 29 O VAL B 37 SHEET 1 B 6 ALA A 27 GLU A 32 0 SHEET 2 B 6 LEU A 35 LEU A 42 -1 O ARG A 39 N ALA A 27 SHEET 3 B 6 THR A 99 VAL A 106 -1 O VAL A 105 N GLU A 36 SHEET 4 B 6 SER A 57 GLU A 63 -1 N GLN A 60 O LEU A 102 SHEET 5 B 6 ASP A 81 LEU A 85 -1 O LEU A 83 N ILE A 59 SHEET 6 B 6 VAL B 11 SER B 13 -1 O ALA B 12 N LEU A 82 SHEET 1 C 4 GLN A 47 HIS A 51 0 SHEET 2 C 4 HIS A 91 ALA A 95 -1 O VAL A 93 N VAL A 48 SHEET 3 C 4 VAL A 66 VAL A 70 -1 N GLU A 67 O ASN A 94 SHEET 4 C 4 ALA A 73 LEU A 77 -1 O ALA A 73 N VAL A 70 SHEET 1 D 4 GLN B 47 HIS B 51 0 SHEET 2 D 4 HIS B 91 ALA B 95 -1 O VAL B 93 N VAL B 48 SHEET 3 D 4 VAL B 66 VAL B 70 -1 N GLU B 67 O ASN B 94 SHEET 4 D 4 ALA B 73 LEU B 77 -1 O LEU B 77 N VAL B 66 SHEET 1 E 6 VAL C 11 SER C 13 0 SHEET 2 E 6 ASP D 81 LEU D 85 -1 O LEU D 82 N ALA C 12 SHEET 3 E 6 SER D 57 GLU D 63 -1 N SER D 57 O LEU D 85 SHEET 4 E 6 THR D 99 VAL D 106 -1 O LEU D 102 N GLN D 60 SHEET 5 E 6 LEU D 35 LEU D 42 -1 N GLU D 36 O VAL D 105 SHEET 6 E 6 ALA D 27 GLU D 32 -1 N LEU D 29 O VAL D 37 SHEET 1 F 6 ALA C 27 LYS C 31 0 SHEET 2 F 6 LEU C 35 LEU C 42 -1 O VAL C 37 N LEU C 29 SHEET 3 F 6 THR C 99 VAL C 106 -1 O THR C 99 N LEU C 42 SHEET 4 F 6 SER C 57 GLU C 63 -1 N GLN C 60 O LEU C 102 SHEET 5 F 6 ASP C 81 LEU C 85 -1 O LEU C 83 N ILE C 59 SHEET 6 F 6 VAL D 11 SER D 13 -1 O ALA D 12 N LEU C 82 SHEET 1 G 4 GLN C 47 HIS C 51 0 SHEET 2 G 4 HIS C 91 ALA C 95 -1 O VAL C 93 N VAL C 48 SHEET 3 G 4 VAL C 66 VAL C 70 -1 N GLU C 67 O ASN C 94 SHEET 4 G 4 ALA C 73 LEU C 77 -1 O LEU C 77 N VAL C 66 SHEET 1 H 4 GLN D 47 HIS D 51 0 SHEET 2 H 4 HIS D 91 ALA D 95 -1 O HIS D 91 N HIS D 51 SHEET 3 H 4 VAL D 66 VAL D 70 -1 N GLU D 67 O ASN D 94 SHEET 4 H 4 ALA D 73 LEU D 77 -1 O LEU D 77 N VAL D 66 LINK C VAL A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N ARG A 39 1555 1555 1.33 LINK C ARG A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N VAL A 41 1555 1555 1.32 LINK C VAL B 37 N MSE B 38 1555 1555 1.35 LINK C MSE B 38 N ARG B 39 1555 1555 1.33 LINK C ARG B 39 N MSE B 40 1555 1555 1.34 LINK C MSE B 40 N VAL B 41 1555 1555 1.33 LINK C VAL C 37 N MSE C 38 1555 1555 1.35 LINK C MSE C 38 N ARG C 39 1555 1555 1.33 LINK C ARG C 39 N MSE C 40 1555 1555 1.33 LINK C MSE C 40 N VAL C 41 1555 1555 1.33 LINK C VAL D 37 N MSE D 38 1555 1555 1.33 LINK C MSE D 38 N ARG D 39 1555 1555 1.33 LINK C ARG D 39 N MSE D 40 1555 1555 1.33 LINK C MSE D 40 N VAL D 41 1555 1555 1.33 CRYST1 63.111 64.027 97.344 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015845 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010273 0.00000