HEADER OXIDOREDUCTASE 16-DEC-08 3FKF TITLE THIOL-DISULFIDE OXIDOREDUCTASE FROM BACTEROIDES FRAGILIS NCTC 9343 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL-DISULFIDE OXIDOREDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 203-347; COMPND 5 EC: 1.8.4.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: NCTC 9343; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS THIOL DISULFIDE OXIDOREDUCTASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.E.C.DUKE,L.FREEMAN,C.TESAR,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 06-NOV-24 3FKF 1 REMARK LINK REVDAT 2 13-JUL-11 3FKF 1 VERSN REVDAT 1 20-JAN-09 3FKF 0 JRNL AUTH N.E.C.DUKE,L.FREEMAN,C.TESAR,A.JOACHIMIAK JRNL TITL THIOL-DISULFIDE OXIDOREDUCTASE FROM BACTEROIDES FRAGILIS JRNL TITL 2 NCTC 9343 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 43114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2297 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2838 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4476 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : -0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4576 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6175 ; 1.827 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 6.149 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;37.721 ;24.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 860 ;18.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;22.510 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 684 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3380 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2800 ; 1.168 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4483 ; 2.170 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1776 ; 3.545 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1692 ; 5.671 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978828 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR, MIRROR REMARK 200 OPTICS : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR, MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43234 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 88.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.3640 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.029 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.10 M SODIUM ACETATE, PH 4.6 2.5 M REMARK 280 AMMONIUM SULPHATE 25% V/V GLYCEROL INCLUDED IN CRYOPROTECTANT, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 61.83500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.97350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.83500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.97350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS FOUR MONOMERS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 LYS A 1 REMARK 465 LYS A 143 REMARK 465 THR A 144 REMARK 465 GLU A 145 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 LYS B 1 REMARK 465 LYS B 143 REMARK 465 THR B 144 REMARK 465 GLU B 145 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 LYS C 1 REMARK 465 VAL C 2 REMARK 465 LYS C 143 REMARK 465 THR C 144 REMARK 465 GLU C 145 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 LYS D 1 REMARK 465 VAL D 2 REMARK 465 THR D 3 REMARK 465 VAL D 4 REMARK 465 GLY D 5 REMARK 465 LYS D 143 REMARK 465 THR D 144 REMARK 465 GLU D 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 43 O HOH C 394 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 42 CB CYS A 42 SG -0.101 REMARK 500 CYS B 42 CB CYS B 42 SG -0.149 REMARK 500 GLU D 26 CG GLU D 26 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 31 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 127 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG C 127 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP D 43 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG D 127 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG D 127 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 101 123.59 -22.71 REMARK 500 ALA A 126 136.87 -173.22 REMARK 500 CYS B 94 133.36 -171.82 REMARK 500 SER C 24 2.15 -68.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT D 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC61440.1 RELATED DB: TARGETDB DBREF 3FKF A 1 145 UNP Q5L7K1 Q5L7K1_BACFN 203 347 DBREF 3FKF B 1 145 UNP Q5L7K1 Q5L7K1_BACFN 203 347 DBREF 3FKF C 1 145 UNP Q5L7K1 Q5L7K1_BACFN 203 347 DBREF 3FKF D 1 145 UNP Q5L7K1 Q5L7K1_BACFN 203 347 SEQADV 3FKF SER A -2 UNP Q5L7K1 EXPRESSION TAG SEQADV 3FKF ASN A -1 UNP Q5L7K1 EXPRESSION TAG SEQADV 3FKF ALA A 0 UNP Q5L7K1 EXPRESSION TAG SEQADV 3FKF SER B -2 UNP Q5L7K1 EXPRESSION TAG SEQADV 3FKF ASN B -1 UNP Q5L7K1 EXPRESSION TAG SEQADV 3FKF ALA B 0 UNP Q5L7K1 EXPRESSION TAG SEQADV 3FKF SER C -2 UNP Q5L7K1 EXPRESSION TAG SEQADV 3FKF ASN C -1 UNP Q5L7K1 EXPRESSION TAG SEQADV 3FKF ALA C 0 UNP Q5L7K1 EXPRESSION TAG SEQADV 3FKF SER D -2 UNP Q5L7K1 EXPRESSION TAG SEQADV 3FKF ASN D -1 UNP Q5L7K1 EXPRESSION TAG SEQADV 3FKF ALA D 0 UNP Q5L7K1 EXPRESSION TAG SEQRES 1 A 148 SER ASN ALA LYS VAL THR VAL GLY LYS SER ALA PRO TYR SEQRES 2 A 148 PHE SER LEU PRO ASN GLU LYS GLY GLU LYS LEU SER ARG SEQRES 3 A 148 SER ALA GLU ARG PHE ARG ASN ARG TYR LEU LEU LEU ASN SEQRES 4 A 148 PHE TRP ALA SER TRP CYS ASP PRO GLN PRO GLU ALA ASN SEQRES 5 A 148 ALA GLU LEU LYS ARG LEU ASN LYS GLU TYR LYS LYS ASN SEQRES 6 A 148 LYS ASN PHE ALA MSE LEU GLY ILE SER LEU ASP ILE ASP SEQRES 7 A 148 ARG GLU ALA TRP GLU THR ALA ILE LYS LYS ASP THR LEU SEQRES 8 A 148 SER TRP ASP GLN VAL CYS ASP PHE THR GLY LEU SER SER SEQRES 9 A 148 GLU THR ALA LYS GLN TYR ALA ILE LEU THR LEU PRO THR SEQRES 10 A 148 ASN ILE LEU LEU SER PRO THR GLY LYS ILE LEU ALA ARG SEQRES 11 A 148 ASP ILE GLN GLY GLU ALA LEU THR GLY LYS LEU LYS GLU SEQRES 12 A 148 LEU LEU LYS THR GLU SEQRES 1 B 148 SER ASN ALA LYS VAL THR VAL GLY LYS SER ALA PRO TYR SEQRES 2 B 148 PHE SER LEU PRO ASN GLU LYS GLY GLU LYS LEU SER ARG SEQRES 3 B 148 SER ALA GLU ARG PHE ARG ASN ARG TYR LEU LEU LEU ASN SEQRES 4 B 148 PHE TRP ALA SER TRP CYS ASP PRO GLN PRO GLU ALA ASN SEQRES 5 B 148 ALA GLU LEU LYS ARG LEU ASN LYS GLU TYR LYS LYS ASN SEQRES 6 B 148 LYS ASN PHE ALA MSE LEU GLY ILE SER LEU ASP ILE ASP SEQRES 7 B 148 ARG GLU ALA TRP GLU THR ALA ILE LYS LYS ASP THR LEU SEQRES 8 B 148 SER TRP ASP GLN VAL CYS ASP PHE THR GLY LEU SER SER SEQRES 9 B 148 GLU THR ALA LYS GLN TYR ALA ILE LEU THR LEU PRO THR SEQRES 10 B 148 ASN ILE LEU LEU SER PRO THR GLY LYS ILE LEU ALA ARG SEQRES 11 B 148 ASP ILE GLN GLY GLU ALA LEU THR GLY LYS LEU LYS GLU SEQRES 12 B 148 LEU LEU LYS THR GLU SEQRES 1 C 148 SER ASN ALA LYS VAL THR VAL GLY LYS SER ALA PRO TYR SEQRES 2 C 148 PHE SER LEU PRO ASN GLU LYS GLY GLU LYS LEU SER ARG SEQRES 3 C 148 SER ALA GLU ARG PHE ARG ASN ARG TYR LEU LEU LEU ASN SEQRES 4 C 148 PHE TRP ALA SER TRP CYS ASP PRO GLN PRO GLU ALA ASN SEQRES 5 C 148 ALA GLU LEU LYS ARG LEU ASN LYS GLU TYR LYS LYS ASN SEQRES 6 C 148 LYS ASN PHE ALA MSE LEU GLY ILE SER LEU ASP ILE ASP SEQRES 7 C 148 ARG GLU ALA TRP GLU THR ALA ILE LYS LYS ASP THR LEU SEQRES 8 C 148 SER TRP ASP GLN VAL CYS ASP PHE THR GLY LEU SER SER SEQRES 9 C 148 GLU THR ALA LYS GLN TYR ALA ILE LEU THR LEU PRO THR SEQRES 10 C 148 ASN ILE LEU LEU SER PRO THR GLY LYS ILE LEU ALA ARG SEQRES 11 C 148 ASP ILE GLN GLY GLU ALA LEU THR GLY LYS LEU LYS GLU SEQRES 12 C 148 LEU LEU LYS THR GLU SEQRES 1 D 148 SER ASN ALA LYS VAL THR VAL GLY LYS SER ALA PRO TYR SEQRES 2 D 148 PHE SER LEU PRO ASN GLU LYS GLY GLU LYS LEU SER ARG SEQRES 3 D 148 SER ALA GLU ARG PHE ARG ASN ARG TYR LEU LEU LEU ASN SEQRES 4 D 148 PHE TRP ALA SER TRP CYS ASP PRO GLN PRO GLU ALA ASN SEQRES 5 D 148 ALA GLU LEU LYS ARG LEU ASN LYS GLU TYR LYS LYS ASN SEQRES 6 D 148 LYS ASN PHE ALA MSE LEU GLY ILE SER LEU ASP ILE ASP SEQRES 7 D 148 ARG GLU ALA TRP GLU THR ALA ILE LYS LYS ASP THR LEU SEQRES 8 D 148 SER TRP ASP GLN VAL CYS ASP PHE THR GLY LEU SER SER SEQRES 9 D 148 GLU THR ALA LYS GLN TYR ALA ILE LEU THR LEU PRO THR SEQRES 10 D 148 ASN ILE LEU LEU SER PRO THR GLY LYS ILE LEU ALA ARG SEQRES 11 D 148 ASP ILE GLN GLY GLU ALA LEU THR GLY LYS LEU LYS GLU SEQRES 12 D 148 LEU LEU LYS THR GLU MODRES 3FKF MSE A 67 MET SELENOMETHIONINE MODRES 3FKF MSE B 67 MET SELENOMETHIONINE MODRES 3FKF MSE C 67 MET SELENOMETHIONINE MODRES 3FKF MSE D 67 MET SELENOMETHIONINE HET MSE A 67 8 HET MSE B 67 8 HET MSE C 67 8 HET MSE D 67 8 HET ACT A 501 4 HET ACT B 502 4 HET ACT C 503 4 HET ACT D 504 4 HETNAM MSE SELENOMETHIONINE HETNAM ACT ACETATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 9 HOH *327(H2 O) HELIX 1 1 ALA A 39 ASP A 43 5 5 HELIX 2 2 GLN A 45 TYR A 59 1 15 HELIX 3 3 ASP A 75 ASP A 86 1 12 HELIX 4 4 THR A 97 SER A 100 5 4 HELIX 5 5 SER A 101 TYR A 107 1 7 HELIX 6 6 GLN A 130 LEU A 142 1 13 HELIX 7 7 ALA B 39 ASP B 43 5 5 HELIX 8 8 GLN B 45 TYR B 59 1 15 HELIX 9 9 ASP B 75 ASP B 86 1 12 HELIX 10 10 THR B 97 SER B 100 5 4 HELIX 11 11 SER B 101 TYR B 107 1 7 HELIX 12 12 GLN B 130 LEU B 142 1 13 HELIX 13 13 GLN C 45 TYR C 59 1 15 HELIX 14 14 ASP C 75 ASP C 86 1 12 HELIX 15 15 THR C 97 SER C 100 5 4 HELIX 16 16 SER C 101 TYR C 107 1 7 HELIX 17 17 GLN C 130 LEU C 142 1 13 HELIX 18 18 PRO D 46 TYR D 59 1 14 HELIX 19 19 ASP D 75 ASP D 86 1 12 HELIX 20 20 THR D 97 SER D 100 5 4 HELIX 21 21 SER D 101 TYR D 107 1 7 HELIX 22 22 GLN D 130 LEU D 142 1 13 SHEET 1 A 2 LEU A 13 PRO A 14 0 SHEET 2 A 2 LYS A 20 LEU A 21 -1 O LEU A 21 N LEU A 13 SHEET 1 B 5 ASP A 91 VAL A 93 0 SHEET 2 B 5 PHE A 65 SER A 71 1 N GLY A 69 O ASP A 91 SHEET 3 B 5 TYR A 32 TRP A 38 1 N LEU A 34 O ALA A 66 SHEET 4 B 5 THR A 114 LEU A 118 -1 O ILE A 116 N LEU A 35 SHEET 5 B 5 ILE A 124 ARG A 127 -1 O LEU A 125 N LEU A 117 SHEET 1 C 2 LEU B 13 PRO B 14 0 SHEET 2 C 2 LYS B 20 LEU B 21 -1 O LEU B 21 N LEU B 13 SHEET 1 D 5 ASP B 91 VAL B 93 0 SHEET 2 D 5 PHE B 65 SER B 71 1 N GLY B 69 O ASP B 91 SHEET 3 D 5 TYR B 32 TRP B 38 1 N LEU B 34 O LEU B 68 SHEET 4 D 5 THR B 114 LEU B 118 -1 O LEU B 118 N LEU B 33 SHEET 5 D 5 ILE B 124 ARG B 127 -1 O LEU B 125 N LEU B 117 SHEET 1 E 2 LEU C 13 PRO C 14 0 SHEET 2 E 2 LYS C 20 LEU C 21 -1 O LEU C 21 N LEU C 13 SHEET 1 F 5 ASP C 91 CYS C 94 0 SHEET 2 F 5 PHE C 65 SER C 71 1 N GLY C 69 O VAL C 93 SHEET 3 F 5 TYR C 32 TRP C 38 1 N ASN C 36 O ILE C 70 SHEET 4 F 5 THR C 114 LEU C 118 -1 O LEU C 118 N LEU C 33 SHEET 5 F 5 ILE C 124 ARG C 127 -1 O ALA C 126 N LEU C 117 SHEET 1 G 2 LEU D 13 PRO D 14 0 SHEET 2 G 2 LYS D 20 LEU D 21 -1 O LEU D 21 N LEU D 13 SHEET 1 H 5 ASP D 91 CYS D 94 0 SHEET 2 H 5 PHE D 65 SER D 71 1 N GLY D 69 O VAL D 93 SHEET 3 H 5 TYR D 32 TRP D 38 1 N ASN D 36 O LEU D 68 SHEET 4 H 5 THR D 114 LEU D 118 -1 O ILE D 116 N LEU D 35 SHEET 5 H 5 ILE D 124 ARG D 127 -1 O LEU D 125 N LEU D 117 LINK C ALA A 66 N MSE A 67 1555 1555 1.34 LINK C MSE A 67 N LEU A 68 1555 1555 1.33 LINK C ALA B 66 N MSE B 67 1555 1555 1.34 LINK C MSE B 67 N LEU B 68 1555 1555 1.33 LINK C ALA C 66 N MSE C 67 1555 1555 1.35 LINK C MSE C 67 N LEU C 68 1555 1555 1.33 LINK C ALA D 66 N MSE D 67 1555 1555 1.32 LINK C MSE D 67 N LEU D 68 1555 1555 1.34 CISPEP 1 ASP A 43 PRO A 44 0 5.80 CISPEP 2 LEU A 112 PRO A 113 0 -5.25 CISPEP 3 ASP B 43 PRO B 44 0 3.09 CISPEP 4 LEU B 112 PRO B 113 0 -5.77 CISPEP 5 LEU C 112 PRO C 113 0 -4.79 CISPEP 6 LEU D 112 PRO D 113 0 -9.01 SITE 1 AC1 4 GLU A 19 GLU A 26 ARG A 27 HOH A 411 SITE 1 AC2 4 GLU B 19 GLU B 26 ARG B 27 HOH B 412 SITE 1 AC3 4 ALA C 25 GLU C 26 ARG C 27 HOH C 413 SITE 1 AC4 2 GLU D 26 ARG D 27 CRYST1 123.670 125.947 56.951 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008086 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017559 0.00000