HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-DEC-08 3FKQ TITLE CRYSTAL STRUCTURE OF NTRC-LIKE TWO-DOMAIN PROTEIN (RER070207001320) TITLE 2 FROM EUBACTERIUM RECTALE AT 2.10 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NTRC-LIKE TWO-DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EUBACTERIUM RECTALE; SOURCE 3 ORGANISM_TAXID: 39491; SOURCE 4 GENE: RER070207001320; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS RER070207001320, NTRC-LIKE TWO-DOMAIN PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 24-JUL-19 3FKQ 1 REMARK DBREF LINK REVDAT 4 25-OCT-17 3FKQ 1 REMARK REVDAT 3 14-MAR-12 3FKQ 1 JRNL REVDAT 2 13-JUL-11 3FKQ 1 VERSN REVDAT 1 06-JAN-09 3FKQ 0 JRNL AUTH Q.XU,B.CHRISTEN,H.J.CHIU,L.JAROSZEWSKI,H.E.KLOCK,M.W.KNUTH, JRNL AUTH 2 M.D.MILLER,M.A.ELSLIGER,A.M.DEACON,A.GODZIK,S.A.LESLEY, JRNL AUTH 3 D.H.FIGURSKI,L.SHAPIRO,I.A.WILSON JRNL TITL STRUCTURE OF THE PILUS ASSEMBLY PROTEIN TADZ FROM JRNL TITL 2 EUBACTERIUM RECTALE: IMPLICATIONS FOR POLAR LOCALIZATION. JRNL REF MOL.MICROBIOL. V. 83 712 2012 JRNL REFN ISSN 0950-382X JRNL PMID 22211578 JRNL DOI 10.1111/J.1365-2958.2011.07954.X REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1535 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2149 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.36000 REMARK 3 B22 (A**2) : 3.46000 REMARK 3 B33 (A**2) : -1.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.171 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.899 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2891 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1900 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3907 ; 1.381 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4696 ; 0.985 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 361 ; 5.844 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;40.547 ;26.129 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;13.714 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 9.848 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 453 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3146 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 538 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1768 ; 1.500 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 725 ; 0.399 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2862 ; 2.663 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1123 ; 5.077 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1041 ; 7.478 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6633 92.0824 8.1982 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.1297 REMARK 3 T33: 0.0241 T12: -0.0660 REMARK 3 T13: -0.0062 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 4.2712 L22: 2.3166 REMARK 3 L33: 2.2567 L12: 0.9541 REMARK 3 L13: 0.3901 L23: 0.1908 REMARK 3 S TENSOR REMARK 3 S11: -0.1159 S12: 0.2052 S13: 0.1432 REMARK 3 S21: -0.0899 S22: 0.1297 S23: 0.2298 REMARK 3 S31: -0.0888 S32: -0.2781 S33: -0.0138 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 354 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8129 60.1498 16.6049 REMARK 3 T TENSOR REMARK 3 T11: 0.0290 T22: 0.0520 REMARK 3 T33: 0.0218 T12: 0.0126 REMARK 3 T13: 0.0186 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 1.1920 L22: 0.5002 REMARK 3 L33: 1.6564 L12: 0.2175 REMARK 3 L13: -0.0846 L23: 0.0185 REMARK 3 S TENSOR REMARK 3 S11: -0.0498 S12: 0.1518 S13: 0.0450 REMARK 3 S21: -0.0621 S22: -0.0101 S23: 0.0037 REMARK 3 S31: 0.1007 S32: 0.2073 S33: 0.0599 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. ATP AND MG ARE MODELED BASED ON DENSITY AND STRUCTURAL REMARK 3 HOMOLOGS. PEG 400 (2PE), SULFATE (SO4), CHLORIDE(CL), AND REMARK 3 GLYCEROL (GOL) MODELED ARE PRESENT IN CRYO/CRYSTALLIZATION REMARK 3 CONDITIONS REMARK 4 REMARK 4 3FKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.57 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97908,0.97845 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30416 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.161 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 5.8320 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : 0.62700 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1M AMMONIUM SULFATE, 2.25% REMARK 280 POLYETHYLENE GLYCOL 400, 15.0% GLYCEROL, 0.1M HEPES PH 7.57, REMARK 280 NANODROP', VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.75300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.74750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.75300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.74750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER REMARK 300 AS A SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -5.90415 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 54.70431 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 ARG A 17 CD NE CZ NH1 NH2 REMARK 470 LYS A 46 CD CE NZ REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 300 CD NE CZ NH1 NH2 REMARK 470 LYS A 312 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 24 -71.40 -112.60 REMARK 500 CYS A 164 42.50 -108.55 REMARK 500 ARG A 189 68.62 -65.77 REMARK 500 ILE A 298 -54.80 -128.24 REMARK 500 SER A 321 44.10 -98.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 356 REMARK 610 2PE A 357 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 139 OG REMARK 620 2 GLU A 162 OE2 91.9 REMARK 620 3 ATP A 500 O2G 170.2 96.1 REMARK 620 4 ATP A 500 O1B 86.5 178.1 85.6 REMARK 620 5 HOH A 388 O 85.4 81.7 101.3 97.2 REMARK 620 6 HOH A 372 O 82.2 87.2 92.5 93.5 163.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE A 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE A 357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 360 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 389300 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. DBREF 3FKQ A -18 354 PDB 3FKQ 3FKQ -18 354 SEQRES 1 A 373 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 373 ASN LEU TYR PHE GLN GLY MSE LYS ILE LYS VAL ALA LEU SEQRES 3 A 373 LEU ASP LYS ASP LYS GLU TYR LEU ASP ARG LEU THR GLY SEQRES 4 A 373 VAL PHE ASN THR LYS TYR ALA ASP LYS LEU GLU VAL TYR SEQRES 5 A 373 SER PHE THR ASP GLU LYS ASN ALA ILE GLU SER VAL LYS SEQRES 6 A 373 GLU TYR ARG ILE ASP VAL LEU ILE ALA GLU GLU ASP PHE SEQRES 7 A 373 ASN ILE ASP LYS SER GLU PHE LYS ARG ASN CYS GLY LEU SEQRES 8 A 373 ALA TYR PHE THR GLY THR PRO GLY ILE GLU LEU ILE LYS SEQRES 9 A 373 ASP GLU ILE ALA ILE CYS LYS TYR GLN ARG VAL ASP VAL SEQRES 10 A 373 ILE PHE LYS GLN ILE LEU GLY VAL TYR SER ASP MSE ALA SEQRES 11 A 373 ALA ASN VAL ALA THR ILE SER GLY GLU ASN ASP LYS SER SEQRES 12 A 373 SER VAL VAL ILE PHE THR SER PRO CYS GLY GLY VAL GLY SEQRES 13 A 373 THR SER THR VAL ALA ALA ALA CYS ALA ILE ALA HIS ALA SEQRES 14 A 373 ASN MSE GLY LYS LYS VAL PHE TYR LEU ASN ILE GLU GLN SEQRES 15 A 373 CYS GLY THR THR ASP VAL PHE PHE GLN ALA GLU GLY ASN SEQRES 16 A 373 ALA THR MSE SER ASP VAL ILE TYR SER LEU LYS SER ARG SEQRES 17 A 373 LYS ALA ASN LEU LEU LEU LYS LEU GLU SER CYS ILE LYS SEQRES 18 A 373 GLN SER GLN GLU GLY VAL SER TYR PHE SER SER THR LYS SEQRES 19 A 373 VAL ALA LEU ASP ILE LEU GLU ILE SER TYR ALA ASP ILE SEQRES 20 A 373 ASP THR LEU ILE GLY ASN ILE GLN GLY MSE ASP ASN TYR SEQRES 21 A 373 ASP GLU ILE ILE VAL ASP LEU PRO PHE SER LEU GLU ILE SEQRES 22 A 373 GLU LYS LEU LYS LEU LEU SER LYS ALA TRP ARG ILE ILE SEQRES 23 A 373 VAL VAL ASN ASP GLY SER GLN LEU SER ASN TYR LYS PHE SEQRES 24 A 373 MSE ARG ALA TYR GLU SER VAL VAL LEU LEU GLU GLN ASN SEQRES 25 A 373 ASP ASP ILE ASN ILE ILE ARG ASN MSE ASN MSE ILE TYR SEQRES 26 A 373 ASN LYS PHE SER ASN LYS ASN SER GLU MSE LEU SER ASN SEQRES 27 A 373 ILE SER ILE LYS THR ILE GLY GLY ALA PRO ARG TYR GLU SEQRES 28 A 373 HIS ALA THR VAL ARG GLN ILE ILE GLU ALA LEU THR LYS SEQRES 29 A 373 MSE GLU PHE PHE GLU GLU ILE LEU GLN MODRES 3FKQ MSE A 1 MET SELENOMETHIONINE MODRES 3FKQ MSE A 110 MET SELENOMETHIONINE MODRES 3FKQ MSE A 152 MET SELENOMETHIONINE MODRES 3FKQ MSE A 179 MET SELENOMETHIONINE MODRES 3FKQ MSE A 238 MET SELENOMETHIONINE MODRES 3FKQ MSE A 281 MET SELENOMETHIONINE MODRES 3FKQ MSE A 302 MET SELENOMETHIONINE MODRES 3FKQ MSE A 304 MET SELENOMETHIONINE MODRES 3FKQ MSE A 316 MET SELENOMETHIONINE MODRES 3FKQ MSE A 346 MET SELENOMETHIONINE HET MSE A 1 5 HET MSE A 110 8 HET MSE A 152 8 HET MSE A 179 8 HET MSE A 238 8 HET MSE A 281 8 HET MSE A 302 8 HET MSE A 304 8 HET MSE A 316 8 HET MSE A 346 8 HET ATP A 500 31 HET MG A 501 1 HET CL A 355 1 HET 2PE A 356 13 HET 2PE A 357 16 HET GOL A 358 6 HET GOL A 359 6 HET SO4 A 360 5 HETNAM MSE SELENOMETHIONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM 2PE NONAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 CL CL 1- FORMUL 5 2PE 2(C18 H38 O10) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *140(H2 O) HELIX 1 1 ASP A 11 TYR A 26 1 16 HELIX 2 2 ASP A 37 ARG A 49 1 13 HELIX 3 3 ASP A 62 LYS A 67 5 6 HELIX 4 4 ARG A 95 VAL A 114 1 20 HELIX 5 5 GLY A 137 GLY A 153 1 17 HELIX 6 6 THR A 166 PHE A 171 1 6 HELIX 7 7 THR A 178 SER A 188 1 11 HELIX 8 8 ASN A 192 CYS A 200 1 9 HELIX 9 9 VAL A 216 ILE A 223 5 8 HELIX 10 10 SER A 224 MSE A 238 1 15 HELIX 11 11 GLU A 253 SER A 261 1 9 HELIX 12 12 SER A 273 GLU A 291 1 19 HELIX 13 13 ILE A 298 ARG A 300 5 3 HELIX 14 14 THR A 335 LYS A 345 1 11 HELIX 15 15 PHE A 348 LEU A 353 1 6 SHEET 1 A 6 LEU A 30 PHE A 35 0 SHEET 2 A 6 ILE A 3 LEU A 8 1 N LEU A 7 O PHE A 35 SHEET 3 A 6 VAL A 52 GLU A 56 1 O ILE A 54 N ALA A 6 SHEET 4 A 6 GLY A 71 THR A 76 1 O GLY A 71 N LEU A 53 SHEET 5 A 6 GLU A 87 CYS A 91 1 O ILE A 90 N TYR A 74 SHEET 6 A 6 LEU A 83 ILE A 84 -1 N ILE A 84 O GLU A 87 SHEET 1 B 8 LYS A 202 GLN A 203 0 SHEET 2 B 8 SER A 209 TYR A 210 -1 O TYR A 210 N LYS A 202 SHEET 3 B 8 VAL A 156 ASN A 160 1 N VAL A 156 O SER A 209 SHEET 4 B 8 GLU A 243 ASP A 247 1 O ILE A 245 N PHE A 157 SHEET 5 B 8 SER A 125 THR A 130 1 N PHE A 129 O VAL A 246 SHEET 6 B 8 ARG A 265 ASN A 270 1 O ILE A 267 N ILE A 128 SHEET 7 B 8 MSE A 302 TYR A 306 1 O ASN A 303 N VAL A 268 SHEET 8 B 8 LYS A 323 GLY A 327 1 O GLY A 326 N TYR A 306 LINK C MSE A 1 N LYS A 2 1555 1555 1.34 LINK C ASP A 109 N MSE A 110 1555 1555 1.32 LINK C MSE A 110 N ALA A 111 1555 1555 1.33 LINK C ASN A 151 N MSE A 152 1555 1555 1.33 LINK C MSE A 152 N GLY A 153 1555 1555 1.33 LINK C THR A 178 N MSE A 179 1555 1555 1.33 LINK C MSE A 179 N SER A 180 1555 1555 1.33 LINK C GLY A 237 N MSE A 238 1555 1555 1.33 LINK C MSE A 238 N ASP A 239 1555 1555 1.33 LINK C PHE A 280 N MSE A 281 1555 1555 1.32 LINK C MSE A 281 N ARG A 282 1555 1555 1.33 LINK C ASN A 301 N MSE A 302 1555 1555 1.33 LINK C MSE A 302 N ASN A 303 1555 1555 1.33 LINK C ASN A 303 N MSE A 304 1555 1555 1.32 LINK C MSE A 304 N ILE A 305 1555 1555 1.33 LINK C GLU A 315 N MSE A 316 1555 1555 1.32 LINK C MSE A 316 N LEU A 317 1555 1555 1.34 LINK C LYS A 345 N MSE A 346 1555 1555 1.33 LINK C MSE A 346 N GLU A 347 1555 1555 1.32 LINK OG SER A 139 MG MG A 501 1555 1555 2.07 LINK OE2 GLU A 162 MG MG A 501 1555 1555 2.12 LINK O2G ATP A 500 MG MG A 501 1555 1555 1.99 LINK O1B ATP A 500 MG MG A 501 1555 1555 2.21 LINK MG MG A 501 O HOH A 388 1555 1555 1.93 LINK MG MG A 501 O HOH A 372 1555 1555 1.96 SITE 1 AC1 27 GLY A 134 GLY A 135 VAL A 136 GLY A 137 SITE 2 AC1 27 THR A 138 SER A 139 THR A 140 GLU A 162 SITE 3 AC1 27 SER A 273 LEU A 275 LYS A 279 ASN A 307 SITE 4 AC1 27 LYS A 308 PRO A 329 ARG A 330 TYR A 331 SITE 5 AC1 27 ILE A 339 GOL A 358 HOH A 365 HOH A 372 SITE 6 AC1 27 HOH A 375 HOH A 377 HOH A 387 HOH A 388 SITE 7 AC1 27 HOH A 425 HOH A 435 MG A 501 SITE 1 AC2 5 SER A 139 GLU A 162 HOH A 372 HOH A 388 SITE 2 AC2 5 ATP A 500 SITE 1 AC3 3 SER A 310 ASN A 311 LYS A 312 SITE 1 AC4 7 ASP A 16 ARG A 17 VAL A 21 MSE A 152 SITE 2 AC4 7 LYS A 154 ASP A 242 HOH A 480 SITE 1 AC5 9 ASP A 11 GLU A 56 GLY A 77 LYS A 92 SITE 2 AC5 9 TYR A 93 MSE A 281 GLU A 285 HOH A 391 SITE 3 AC5 9 HOH A 413 SITE 1 AC6 8 SER A 273 GLN A 274 LEU A 275 ASN A 313 SITE 2 AC6 8 ALA A 334 VAL A 336 ILE A 339 ATP A 500 SITE 1 AC7 5 SER A 310 ASN A 313 ARG A 330 GLU A 332 SITE 2 AC7 5 HIS A 333 SITE 1 AC8 3 LEU A 221 GLU A 253 ILE A 254 CRYST1 121.506 79.495 55.022 90.00 96.16 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008230 0.000000 0.000889 0.00000 SCALE2 0.000000 0.012579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018280 0.00000 HETATM 1 N MSE A 1 21.764 80.074 -4.216 1.00 57.27 N HETATM 2 CA MSE A 1 21.469 81.320 -3.449 1.00 57.72 C HETATM 3 C MSE A 1 22.673 81.770 -2.592 1.00 57.45 C HETATM 4 O MSE A 1 22.898 81.248 -1.490 1.00 59.54 O HETATM 5 CB MSE A 1 20.229 81.114 -2.569 1.00 57.14 C