HEADER IMMUNE SYSTEM 22-DEC-08 3FMG TITLE STRUCTURE OF ROTAVIRUS OUTER CAPSID PROTEIN VP7 TRIMER IN COMPLEX WITH TITLE 2 A NEUTRALIZING FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB OF NEUTRALIZING ANTIBODY 4F8, LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: FAB OF NEUTRALIZING ANTIBODY 4F8, HEAVY CHAIN; COMPND 6 CHAIN: H; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: GLYCOPROTEIN VP7; COMPND 9 CHAIN: A; COMPND 10 FRAGMENT: TRIMER SUBUNIT; COMPND 11 SYNONYM: SEROTYPE-SPECIFIC ANTIGEN, OUTER CAPSID GLYCOPROTEIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 OTHER_DETAILS: HYBRIDOMA; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_TAXID: 10090; SOURCE 8 OTHER_DETAILS: HYBRIDOMA; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: SIMIAN ROTAVIRUS; SOURCE 11 ORGANISM_TAXID: 10922; SOURCE 12 STRAIN: RRV; SOURCE 13 GENE: S9, VP7; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: SF9 KEYWDS ANTIBODY-ANTIGEN COMPLEX, CALCIUM DEPENDENT TRIMER, ANTIPARALLEL KEYWDS 2 BETA-SANDWICH, JELLY ROLL, ALPHA-BETA-ALPHA SANDWICH, ROSSMANN FOLD, KEYWDS 3 CAPSID PROTEIN, ENDOPLASMIC RETICULUM, GLYCOPROTEIN, MEMBRANE, KEYWDS 4 TRANSMEMBRANE, VIRION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.T.AOKI,E.C.SETTEMBRE,S.D.TRASK,H.B.GREENBERG,S.C.HARRISON, AUTHOR 2 P.R.DORMITZER REVDAT 3 06-SEP-23 3FMG 1 REMARK REVDAT 2 02-JUN-10 3FMG 1 REMARK REVDAT 1 23-JUN-09 3FMG 0 JRNL AUTH S.T.AOKI,E.C.SETTEMBRE,S.D.TRASK,H.B.GREENBERG,S.C.HARRISON, JRNL AUTH 2 P.R.DORMITZER JRNL TITL STRUCTURE OF ROTAVIRUS OUTER-LAYER PROTEIN VP7 BOUND WITH A JRNL TITL 2 NEUTRALIZING FAB. JRNL REF SCIENCE V. 324 1444 2009 JRNL REFN ISSN 0036-8075 JRNL PMID 19520960 JRNL DOI 10.1126/SCIENCE.1170481 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.8 REMARK 3 NUMBER OF REFLECTIONS : 28722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3167 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3470 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 492 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5164 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.77 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.80 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FMG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34017 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.71700 REMARK 200 R SYM FOR SHELL (I) : 0.71700 REMARK 200 FOR SHELL : 2.483 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1DBM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA CITRATE, 5% PEG 4K, 200 MM REMARK 280 NACL, 0.1 MM CACL2, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 122.08950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.08950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 122.08950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 122.08950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 122.08950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 122.08950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 122.08950 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 122.08950 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 122.08950 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 122.08950 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 122.08950 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 122.08950 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 122.08950 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 122.08950 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 122.08950 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 122.08950 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 122.08950 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 122.08950 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 183.13425 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 61.04475 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 61.04475 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 183.13425 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 183.13425 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 183.13425 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 61.04475 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 61.04475 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 183.13425 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 61.04475 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 183.13425 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 61.04475 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 183.13425 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 61.04475 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 61.04475 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 61.04475 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 183.13425 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 61.04475 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 183.13425 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 183.13425 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 183.13425 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 61.04475 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 61.04475 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 183.13425 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 183.13425 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 61.04475 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 61.04475 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 61.04475 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 61.04475 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 183.13425 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 61.04475 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 183.13425 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 61.04475 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 183.13425 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 183.13425 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 183.13425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 122.08950 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 122.08950 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -122.08950 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 122.08950 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 51 REMARK 465 ASN A 52 REMARK 465 TYR A 53 REMARK 465 GLY A 54 REMARK 465 ILE A 55 REMARK 465 ASN A 56 REMARK 465 LEU A 57 REMARK 465 PRO A 58 REMARK 465 ILE A 59 REMARK 465 THR A 60 REMARK 465 GLY A 61 REMARK 465 SER A 62 REMARK 465 MET A 63 REMARK 465 ASP A 64 REMARK 465 THR A 65 REMARK 465 ALA A 66 REMARK 465 TYR A 67 REMARK 465 ALA A 68 REMARK 465 ASN A 69 REMARK 465 SER A 70 REMARK 465 THR A 71 REMARK 465 GLN A 72 REMARK 465 GLU A 73 REMARK 465 GLU A 74 REMARK 465 THR A 75 REMARK 465 PHE A 76 REMARK 465 LEU A 77 REMARK 465 ARG A 313 REMARK 465 SER A 314 REMARK 465 ARG A 315 REMARK 465 SER A 316 REMARK 465 LEU A 317 REMARK 465 ASN A 318 REMARK 465 SER A 319 REMARK 465 ALA A 320 REMARK 465 ALA A 321 REMARK 465 PHE A 322 REMARK 465 TYR A 323 REMARK 465 TYR A 324 REMARK 465 ARG A 325 REMARK 465 ILE A 326 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE LYS H 23 CG2 THR H 79 1.82 REMARK 500 CD ARG L 108 CD1 TYR L 140 1.90 REMARK 500 CD LYS H 23 CG2 THR H 79 1.94 REMARK 500 OD1 ASN A 288 NZ LYS A 290 1.96 REMARK 500 CB CYS A 82 SG CYS A 135 2.15 REMARK 500 CD ARG L 108 CE1 TYR L 140 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 151 OD1 ASN A 288 8555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 245 CB THR A 245 OG1 0.127 REMARK 500 ILE A 246 CB ILE A 246 CG2 0.189 REMARK 500 MET A 285 C ARG A 286 N 0.235 REMARK 500 ARG A 286 N ARG A 286 CA 0.206 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS L 23 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 PRO H 185 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 LYS A 223 CD - CE - NZ ANGL. DEV. = 14.2 DEGREES REMARK 500 THR A 245 CA - CB - OG1 ANGL. DEV. = -12.6 DEGREES REMARK 500 ILE A 246 CA - CB - CG2 ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG A 286 CB - CA - C ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG A 286 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 15 150.80 -48.77 REMARK 500 GLU L 27 -163.28 -111.12 REMARK 500 SER L 31 18.12 -162.28 REMARK 500 GLN L 40 114.62 -31.25 REMARK 500 LYS L 42 -154.99 -135.82 REMARK 500 LYS L 50 47.98 31.47 REMARK 500 ALA L 51 -57.34 72.67 REMARK 500 PRO L 55 -166.26 -64.35 REMARK 500 VAL L 58 132.14 -30.92 REMARK 500 PRO L 59 -175.83 -58.22 REMARK 500 SER L 76 -80.88 -95.68 REMARK 500 VAL L 78 119.95 -35.76 REMARK 500 PRO L 80 -18.00 -43.11 REMARK 500 ASN L 92 40.85 -101.85 REMARK 500 ARG L 108 163.81 171.63 REMARK 500 PRO L 120 165.54 -47.81 REMARK 500 ASN L 138 81.54 39.23 REMARK 500 TYR L 140 -81.45 -92.23 REMARK 500 PRO L 141 111.68 -37.87 REMARK 500 ASP L 151 50.99 75.68 REMARK 500 GLN L 156 -10.68 -168.31 REMARK 500 GLN L 166 125.53 -39.82 REMARK 500 SER L 171 28.34 85.66 REMARK 500 TYR L 173 -158.86 -88.66 REMARK 500 SER L 174 139.39 -175.72 REMARK 500 GLN H 3 133.52 -173.06 REMARK 500 ASN H 78 34.90 73.22 REMARK 500 ALA H 94 -174.88 176.01 REMARK 500 HIS H 102 173.84 -45.33 REMARK 500 PRO H 105 -79.11 -30.99 REMARK 500 THR H 126 150.95 -48.84 REMARK 500 PRO H 136 153.60 -45.51 REMARK 500 SER H 138 -6.08 -53.57 REMARK 500 ALA H 139 159.26 -39.65 REMARK 500 ASN H 145 -89.28 -47.79 REMARK 500 SER H 146 -95.73 -65.79 REMARK 500 PRO H 159 -166.52 -117.25 REMARK 500 PRO H 161 -162.75 -113.73 REMARK 500 ASP H 193 -6.56 74.06 REMARK 500 SER H 213 25.59 -71.89 REMARK 500 GLU H 214 -155.61 -137.79 REMARK 500 THR H 215 65.56 -153.52 REMARK 500 PRO H 223 -9.89 -50.15 REMARK 500 ILE H 233 88.62 -65.13 REMARK 500 PRO H 237 174.76 -54.66 REMARK 500 PRO A 112 158.94 -43.97 REMARK 500 ASP A 130 66.02 -110.24 REMARK 500 GLN A 132 83.68 -52.11 REMARK 500 THR A 147 32.80 -91.20 REMARK 500 LEU A 148 -12.03 -141.34 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 328 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A171T AND N324Y ARE NATURAL VARIANTS. DBREF 3FMG A 51 326 UNP P12476 VS09_ROTHR 51 326 DBREF 3FMG L 1 211 PDB 3FMG 3FMG 1 211 DBREF 3FMG H 1 238 PDB 3FMG 3FMG 1 238 SEQADV 3FMG THR A 171 UNP P12476 ALA 171 SEE REMARK 999 SEQADV 3FMG TYR A 324 UNP P12476 ASN 324 SEE REMARK 999 SEQRES 1 L 211 ASP ILE GLN MET THR GLN SER PRO ALA SER LEU SER ALA SEQRES 2 L 211 SER VAL GLY GLU THR VAL THR ILE THR CYS ARG PRO SER SEQRES 3 L 211 GLU ASN ILE TYR SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 211 GLN GLY LYS SER PRO GLN LEU LEU VAL TYR LYS ALA LYS SEQRES 5 L 211 THR LEU PRO GLU GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 211 GLY SER GLY THR HIS PHE SER LEU LYS ILE SER SER VAL SEQRES 7 L 211 GLN PRO GLU ASP PHE GLY THR TYR TYR CYS GLN HIS HIS SEQRES 8 L 211 ASN GLY PRO PRO LEU THR PHE GLY ALA GLY THR LYS LEU SEQRES 9 L 211 GLU LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 211 PHE PRO PRO SER SER LYS GLN LEU THR SER GLY GLY ALA SEQRES 11 L 211 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 211 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 211 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 211 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 211 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 211 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 211 PHE ASN ARG SEQRES 1 H 221 GLN VAL GLN LEU GLN GLN SER GLY ALA GLU LEU MET LYS SEQRES 2 H 221 PRO GLY ALA LEU VAL LYS ILE SER CYS LYS ALA THR GLY SEQRES 3 H 221 TYR THR PHE SER SER TYR TRP ILE GLU TRP VAL LYS GLN SEQRES 4 H 221 ARG PRO GLY HIS GLY LEU GLU TRP ILE GLY GLU ILE LEU SEQRES 5 H 221 PRO GLY SER GLY SER ILE ASN TYR ASN GLU LYS PHE LYS SEQRES 6 H 221 GLY LYS ALA THR PHE THR ALA ASP THR SER SER ASN THR SEQRES 7 H 221 ALA TYR MET GLN LEU ASN SER LEU THR SER GLU ASP SER SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA ARG ASN HIS GLY SER PRO ASP SEQRES 9 H 221 PHE HIS VAL MET ASP TYR TRP GLY GLN GLY THR SER ILE SEQRES 10 H 221 THR VAL SER SER ALA LYS THR THR ALA PRO PRO VAL TYR SEQRES 11 H 221 PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER MET SEQRES 12 H 221 VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU SEQRES 13 H 221 PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER SEQRES 14 H 221 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU SEQRES 15 H 221 TYR THR LEU SER SER SER VAL THR VAL PRO SER SER PRO SEQRES 16 H 221 ARG PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO SEQRES 17 H 221 ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 1 A 276 GLN ASN TYR GLY ILE ASN LEU PRO ILE THR GLY SER MET SEQRES 2 A 276 ASP THR ALA TYR ALA ASN SER THR GLN GLU GLU THR PHE SEQRES 3 A 276 LEU THR SER THR LEU CYS LEU TYR TYR PRO THR GLU ALA SEQRES 4 A 276 ALA THR GLU ILE ASN ASP ASN SER TRP LYS ASP THR LEU SEQRES 5 A 276 SER GLN LEU PHE LEU THR LYS GLY TRP PRO THR GLY SER SEQRES 6 A 276 VAL TYR PHE LYS GLU TYR THR ASP ILE ALA SER PHE SER SEQRES 7 A 276 VAL ASP PRO GLN LEU TYR CYS ASP TYR ASN VAL VAL LEU SEQRES 8 A 276 MET LYS TYR ASP ALA THR LEU GLN LEU ASP MET SER GLU SEQRES 9 A 276 LEU ALA ASP LEU ILE LEU ASN GLU TRP LEU CYS ASN PRO SEQRES 10 A 276 MET ASP ILE THR LEU TYR TYR TYR GLN GLN THR ASP GLU SEQRES 11 A 276 ALA ASN LYS TRP ILE SER MET GLY SER SER CYS THR ILE SEQRES 12 A 276 LYS VAL CYS PRO LEU ASN THR GLN THR LEU GLY ILE GLY SEQRES 13 A 276 CYS LEU THR THR ASP THR ALA THR PHE GLU GLU VAL ALA SEQRES 14 A 276 THR ALA GLU LYS LEU VAL ILE THR ASP VAL VAL ASP GLY SEQRES 15 A 276 VAL ASN HIS LYS LEU ASP VAL THR THR ALA THR CYS THR SEQRES 16 A 276 ILE ARG ASN CYS LYS LYS LEU GLY PRO ARG GLU ASN VAL SEQRES 17 A 276 ALA VAL ILE GLN VAL GLY GLY SER ASP VAL LEU ASP ILE SEQRES 18 A 276 THR ALA ASP PRO THR THR ALA PRO GLN THR GLU ARG MET SEQRES 19 A 276 MET ARG ILE ASN TRP LYS LYS TRP TRP GLN VAL PHE TYR SEQRES 20 A 276 THR VAL VAL ASP TYR VAL ASN GLN ILE ILE GLN ALA MET SEQRES 21 A 276 SER LYS ARG SER ARG SER LEU ASN SER ALA ALA PHE TYR SEQRES 22 A 276 TYR ARG ILE HET CA A 327 1 HET CA A 328 1 HETNAM CA CALCIUM ION FORMUL 4 CA 2(CA 2+) HELIX 1 1 PRO L 80 ASP L 82 1 3 HELIX 2 2 SER L 122 SER L 127 1 6 HELIX 3 3 LYS L 183 ARG L 188 1 6 HELIX 4 4 PHE H 29 SER H 31 1 3 HELIX 5 5 LYS H 66 LYS H 68 1 3 HELIX 6 6 THR A 87 ILE A 93 1 7 HELIX 7 7 TRP A 98 LYS A 109 1 12 HELIX 8 8 ILE A 124 VAL A 129 1 6 HELIX 9 9 ALA A 146 LEU A 148 1 3 HELIX 10 10 MET A 152 LEU A 160 1 9 HELIX 11 11 TRP A 292 ASP A 301 1 10 HELIX 12 12 TYR A 302 MET A 310 1 9 SHEET 1 1 1 MET L 4 SER L 7 0 SHEET 1 2 1 SER L 10 ALA L 13 0 SHEET 1 3 1 VAL L 19 PRO L 25 0 SHEET 1 4 1 LEU L 33 GLN L 38 0 SHEET 1 6 1 PHE L 62 SER L 67 0 SHEET 1 7 1 HIS L 70 ILE L 75 0 SHEET 1 8 1 GLY L 84 HIS L 90 0 SHEET 1 9 1 THR L 102 LEU L 106 0 SHEET 1 10 1 THR L 114 PHE L 118 0 SHEET 1 11 1 GLY L 129 PHE L 139 0 SHEET 1 12 1 ASN L 145 ILE L 150 0 SHEET 1 13 1 VAL L 159 TRP L 163 0 SHEET 1 14 1 TYR L 173 THR L 182 0 SHEET 1 15 1 SER L 191 THR L 197 0 SHEET 1 16 1 ILE L 205 ASN L 210 0 SHEET 1 17 1 GLN H 3 GLN H 6 0 SHEET 1 18 1 GLU H 10 MET H 12 0 SHEET 1 19 1 VAL H 18 THR H 25 0 SHEET 1 20 1 ILE H 34 GLN H 39 0 SHEET 1 21 1 GLU H 46 LEU H 52 0 SHEET 1 22 1 GLY H 57 TYR H 61 0 SHEET 1 23 1 ALA H 69 ASP H 74 0 SHEET 1 24 1 ASN H 78 LEU H 84 0 SHEET 1 25 1 ALA H 94 ARG H 100 0 SHEET 1 26 1 MET H 110 TRP H 113 0 SHEET 1 27 1 THR H 117 VAL H 121 0 SHEET 1 28 1 VAL H 131 LEU H 134 0 SHEET 1 29 1 MET H 147 TYR H 157 0 SHEET 1 30 1 THR H 163 TRP H 167 0 SHEET 1 31 1 VAL H 181 THR H 183 0 SHEET 1 32 1 VAL H 187 GLN H 189 0 SHEET 1 33 1 LEU H 194 PRO H 204 0 SHEET 1 34 1 THR H 217 HIS H 222 0 SHEET 1 35 1 SER H 226 LYS H 232 0 SHEET 1 36 1 THR A 80 PRO A 86 0 SHEET 1 37 1 VAL A 116 TYR A 121 0 SHEET 1 38 1 TYR A 137 LYS A 143 0 SHEET 1 39 1 ASN A 161 PRO A 167 0 SHEET 1 40 1 ASN A 182 GLY A 188 0 SHEET 1 41 1 THR A 192 PRO A 197 0 SHEET 1 42 1 GLU A 216 ALA A 219 0 SHEET 1 43 1 LEU A 224 THR A 227 0 SHEET 1 44 1 ASN A 234 VAL A 239 0 SHEET 1 45 1 CYS A 244 PRO A 254 0 SHEET 1 46 1 VAL A 258 VAL A 263 0 SHEET 1 47 1 MET A 284 ILE A 287 0 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 98 1555 1555 2.04 SSBOND 4 CYS H 152 CYS H 218 1555 1555 2.03 SSBOND 5 CYS A 82 CYS A 135 1555 1555 2.49 SSBOND 6 CYS A 165 CYS A 249 1555 1555 2.04 SSBOND 7 CYS A 191 CYS A 244 1555 1555 2.45 SSBOND 8 CYS A 196 CYS A 207 1555 1555 2.04 LINK OD2 ASP A 95 CA CA A 328 1555 1555 2.36 LINK OD2 ASP A 301 CA CA A 327 1555 1555 2.71 CISPEP 1 SER L 7 PRO L 8 0 -0.08 CISPEP 2 PRO L 94 PRO L 95 0 0.08 CISPEP 3 PHE H 158 PRO H 159 0 -0.47 CISPEP 4 GLU H 160 PRO H 161 0 -0.56 CISPEP 5 ARG H 210 PRO H 212 0 -0.30 SITE 1 AC1 6 GLN A 177 LYS A 183 ASP A 228 VAL A 229 SITE 2 AC1 6 ASP A 231 ASP A 301 SITE 1 AC2 4 ASP A 95 GLY A 206 THR A 214 GLU A 216 CRYST1 244.179 244.179 244.179 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004095 0.00000