HEADER TRANSFERASE 23-DEC-08 3FN2 TITLE CRYSTAL STRUCTURE OF A PUTATIVE SENSOR HISTIDINE KINASE DOMAIN FROM TITLE 2 CLOSTRIDIUM SYMBIOSUM ATCC 14940 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SENSOR HISTIDINE KINASE DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 41-143; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM SYMBIOSUM ATCC 14940; SOURCE 3 ORGANISM_TAXID: 411472; SOURCE 4 ATCC: 14940; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS GUT MICROBIOME, SENSOR HISTIDINE KINASE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,C.TESAR,L.FREEMAN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 4 09-OCT-24 3FN2 1 REMARK SEQADV LINK REVDAT 3 01-NOV-17 3FN2 1 REMARK REVDAT 2 13-JUL-11 3FN2 1 VERSN REVDAT 1 27-JAN-09 3FN2 0 JRNL AUTH M.E.CUFF,C.TESAR,L.FREEMAN,A.JOACHIMIAK JRNL TITL THE STRUCTURE OF A PUTATIVE SENSOR HISTIDINE KINASE DOMAIN JRNL TITL 2 FROM CLOSTRIDIUM SYMBIOSUM ATCC 14940 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 16072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 812 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 883 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.41000 REMARK 3 B22 (A**2) : -2.41000 REMARK 3 B33 (A**2) : 3.62000 REMARK 3 B12 (A**2) : -1.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.653 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1700 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1190 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2283 ; 1.475 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2887 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 202 ; 5.040 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;43.310 ;24.624 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 334 ;16.338 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;25.062 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 237 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1891 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 363 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 981 ; 0.925 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 409 ; 0.239 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1581 ; 1.687 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 719 ; 2.746 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 701 ; 4.398 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 139 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3288 6.7520 33.5816 REMARK 3 T TENSOR REMARK 3 T11: 0.0148 T22: 0.0370 REMARK 3 T33: 0.0606 T12: -0.0059 REMARK 3 T13: -0.0047 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.1249 L22: 2.5377 REMARK 3 L33: 2.1390 L12: -0.2736 REMARK 3 L13: 0.3458 L23: 0.7382 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.0260 S13: 0.2274 REMARK 3 S21: 0.0397 S22: -0.0619 S23: -0.2561 REMARK 3 S31: -0.1282 S32: -0.0299 S33: 0.0452 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 139 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6172 0.7754 30.7089 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.0527 REMARK 3 T33: 0.0607 T12: -0.0056 REMARK 3 T13: 0.0151 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.2041 L22: 2.8456 REMARK 3 L33: 1.6585 L12: -0.4823 REMARK 3 L13: 0.0707 L23: 0.6650 REMARK 3 S TENSOR REMARK 3 S11: 0.0668 S12: 0.1328 S13: -0.0296 REMARK 3 S21: -0.1106 S22: -0.0448 S23: -0.2897 REMARK 3 S31: 0.0661 S32: -0.0284 S33: -0.0220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3FN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945, 0.97921 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16144 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.4180 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 6.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M ACETATE PH 4.5, 0.8M NAH2PO4, REMARK 280 1.4M K2HPO3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.62600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.96099 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.57000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 53.62600 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.96099 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.57000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 53.62600 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.96099 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.57000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.92197 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 33.14000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.92197 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 33.14000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.92197 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 33.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -151.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 38 REMARK 465 ASN A 39 REMARK 465 ALA A 40 REMARK 465 ASN A 41 REMARK 465 GLY A 42 REMARK 465 GLU A 140 REMARK 465 LYS A 141 REMARK 465 GLN A 142 REMARK 465 ASN A 143 REMARK 465 SER B 38 REMARK 465 ASN B 39 REMARK 465 ALA B 40 REMARK 465 ASN B 41 REMARK 465 GLY B 42 REMARK 465 GLU B 140 REMARK 465 LYS B 141 REMARK 465 GLN B 142 REMARK 465 ASN B 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 GLN B 97 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 25 O HOH B 149 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 107 CB GLN A 107 CG -0.208 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 105 -31.10 -34.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 201 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 85 O REMARK 620 2 GLY A 87 O 88.3 REMARK 620 3 GLY B 85 O 176.1 92.2 REMARK 620 4 GLY B 87 O 91.0 173.6 88.0 REMARK 620 5 HOH B 166 O 90.7 95.3 93.1 91.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC21265.1 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN WAS NOT AVAILABLE AT THE REMARK 999 UNIPROT KNOWLEDGEBASE DATABASE (UNIPROTKB) AT THE TIME REMARK 999 OF DEPOSITION. DBREF 3FN2 A 38 143 PDB 3FN2 3FN2 38 143 DBREF 3FN2 B 38 143 PDB 3FN2 3FN2 38 143 SEQADV 3FN2 SER A 38 PDB 3FN2 EXPRESSION TAG SEQADV 3FN2 ASN A 39 PDB 3FN2 EXPRESSION TAG SEQADV 3FN2 ALA A 40 PDB 3FN2 EXPRESSION TAG SEQADV 3FN2 SER B 38 PDB 3FN2 EXPRESSION TAG SEQADV 3FN2 ASN B 39 PDB 3FN2 EXPRESSION TAG SEQADV 3FN2 ALA B 40 PDB 3FN2 EXPRESSION TAG SEQRES 1 A 106 SER ASN ALA ASN GLY TYR THR MSE GLN ARG ASP ASN GLN SEQRES 2 A 106 LYS THR LEU ALA VAL TYR MSE PHE GLU GLU ILE ASN ARG SEQRES 3 A 106 ASP VAL GLU TYR LEU SER GLY ARG LEU SER GLU LYS GLU SEQRES 4 A 106 LEU LYS ASP LYS TYR ARG TYR TYR GLY ARG GLY TYR VAL SEQRES 5 A 106 ARG ILE THR ASP LYS ASP GLY GLN VAL ILE THR TYR GLU SEQRES 6 A 106 ASP GLY SER VAL GLN ASP LYS THR VAL PHE LEU THR ASN SEQRES 7 A 106 GLU GLY ALA ASN LYS LEU GLY TRP LYS LEU GLU PHE LEU SEQRES 8 A 106 ILE ASP GLU LYS MSE PHE GLU GLU GLU ILE LEU GLU LYS SEQRES 9 A 106 GLN ASN SEQRES 1 B 106 SER ASN ALA ASN GLY TYR THR MSE GLN ARG ASP ASN GLN SEQRES 2 B 106 LYS THR LEU ALA VAL TYR MSE PHE GLU GLU ILE ASN ARG SEQRES 3 B 106 ASP VAL GLU TYR LEU SER GLY ARG LEU SER GLU LYS GLU SEQRES 4 B 106 LEU LYS ASP LYS TYR ARG TYR TYR GLY ARG GLY TYR VAL SEQRES 5 B 106 ARG ILE THR ASP LYS ASP GLY GLN VAL ILE THR TYR GLU SEQRES 6 B 106 ASP GLY SER VAL GLN ASP LYS THR VAL PHE LEU THR ASN SEQRES 7 B 106 GLU GLY ALA ASN LYS LEU GLY TRP LYS LEU GLU PHE LEU SEQRES 8 B 106 ILE ASP GLU LYS MSE PHE GLU GLU GLU ILE LEU GLU LYS SEQRES 9 B 106 GLN ASN MODRES 3FN2 MSE A 45 MET SELENOMETHIONINE MODRES 3FN2 MSE A 57 MET SELENOMETHIONINE MODRES 3FN2 MSE A 133 MET SELENOMETHIONINE MODRES 3FN2 MSE B 45 MET SELENOMETHIONINE MODRES 3FN2 MSE B 57 MET SELENOMETHIONINE MODRES 3FN2 MSE B 133 MET SELENOMETHIONINE HET MSE A 45 8 HET MSE A 57 16 HET MSE A 133 8 HET MSE B 45 8 HET MSE B 57 16 HET MSE B 133 8 HET K A 201 1 HET PO4 B 202 5 HET EDO B 203 4 HETNAM MSE SELENOMETHIONINE HETNAM K POTASSIUM ION HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 K K 1+ FORMUL 4 PO4 O4 P 3- FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *154(H2 O) HELIX 1 1 THR A 44 SER A 69 1 26 HELIX 2 2 SER A 73 ARG A 82 1 10 HELIX 3 3 GLU A 131 LEU A 139 1 9 HELIX 4 4 THR B 44 SER B 69 1 26 HELIX 5 5 SER B 73 ARG B 82 1 10 HELIX 6 6 ASP B 103 GLN B 107 5 5 HELIX 7 7 GLU B 131 LEU B 139 1 9 SHEET 1 A 3 TYR A 88 THR A 92 0 SHEET 2 A 3 LYS A 124 ASP A 130 -1 O LYS A 124 N THR A 92 SHEET 3 A 3 LYS A 109 ASN A 115 -1 N ASN A 115 O LEU A 125 SHEET 1 B 3 TYR B 88 THR B 92 0 SHEET 2 B 3 LYS B 124 ASP B 130 -1 O LEU B 128 N TYR B 88 SHEET 3 B 3 LYS B 109 ASN B 115 -1 N LEU B 113 O PHE B 127 LINK C THR A 44 N MSE A 45 1555 1555 1.33 LINK C MSE A 45 N GLN A 46 1555 1555 1.34 LINK C TYR A 56 N AMSE A 57 1555 1555 1.33 LINK C TYR A 56 N BMSE A 57 1555 1555 1.34 LINK C AMSE A 57 N PHE A 58 1555 1555 1.34 LINK C BMSE A 57 N PHE A 58 1555 1555 1.33 LINK C LYS A 132 N MSE A 133 1555 1555 1.33 LINK C MSE A 133 N PHE A 134 1555 1555 1.34 LINK C THR B 44 N MSE B 45 1555 1555 1.33 LINK C MSE B 45 N GLN B 46 1555 1555 1.34 LINK C TYR B 56 N AMSE B 57 1555 1555 1.34 LINK C TYR B 56 N BMSE B 57 1555 1555 1.33 LINK C AMSE B 57 N PHE B 58 1555 1555 1.33 LINK C BMSE B 57 N PHE B 58 1555 1555 1.33 LINK C LYS B 132 N MSE B 133 1555 1555 1.33 LINK C MSE B 133 N PHE B 134 1555 1555 1.34 LINK O GLY A 85 K K A 201 1555 1555 2.76 LINK O GLY A 87 K K A 201 1555 1555 2.73 LINK K K A 201 O GLY B 85 1555 1555 2.71 LINK K K A 201 O GLY B 87 1555 1555 2.63 LINK K K A 201 O HOH B 166 1555 1555 2.51 SITE 1 AC1 5 GLY A 85 GLY A 87 GLY B 85 GLY B 87 SITE 2 AC1 5 HOH B 166 SITE 1 AC2 8 HOH B 13 ARG B 90 VAL B 106 LYS B 109 SITE 2 AC2 8 THR B 110 VAL B 111 LEU B 128 EDO B 203 SITE 1 AC3 6 GLY A 104 GLN B 107 LYS B 109 THR B 110 SITE 2 AC3 6 HOH B 147 PO4 B 202 CRYST1 107.252 107.252 49.710 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009324 0.005383 0.000000 0.00000 SCALE2 0.000000 0.010766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020117 0.00000