HEADER OXIDOREDUCTASE 23-DEC-08 3FN4 TITLE APO-FORM OF NAD-DEPENDENT FORMATE DEHYDROGENASE FROM BACTERIUM TITLE 2 MORAXELLA SP.C-1 IN CLOSED CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT FORMATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.2.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MORAXELLA SP.; SOURCE 3 ORGANISM_TAXID: 479; SOURCE 4 STRAIN: C-1; SOURCE 5 GENE: FDH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMXFDH8A KEYWDS HOMODIMER, CLOSED CONFORMATION OF APO-FORM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.G.SHABALIN,K.M.POLYAKOV,E.V.FILIPPOVA,P.V.DOROVATOVSKIY, AUTHOR 2 T.V.TIKHONOVA,E.G.SADYKHOV,V.I.TISHKOV,V.O.POPOV REVDAT 5 06-SEP-23 3FN4 1 REMARK REVDAT 4 01-NOV-17 3FN4 1 REMARK REVDAT 3 13-JUL-11 3FN4 1 VERSN REVDAT 2 15-SEP-10 3FN4 1 JRNL REVDAT 1 01-DEC-09 3FN4 0 JRNL AUTH I.G.SHABALIN,E.V.FILIPPOVA,K.M.POLYAKOV,E.G.SADYKHOV, JRNL AUTH 2 T.N.SAFONOVA,T.V.TIKHONOVA,V.I.TISHKOV,V.O.POPOV JRNL TITL STRUCTURES OF THE APO AND HOLO FORMS OF FORMATE JRNL TITL 2 DEHYDROGENASE FROM THE BACTERIUM MORAXELLA SP. C-1: TOWARDS JRNL TITL 3 UNDERSTANDING THE MECHANISM OF THE CLOSURE OF THE JRNL TITL 4 INTERDOMAIN CLEFT JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 1315 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19966418 JRNL DOI 10.1107/S0907444909040773 REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1393 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1968 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : 0.34000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.83000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.697 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3089 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4217 ; 1.820 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 6.883 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;37.767 ;23.438 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 457 ;14.097 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;13.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 473 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2373 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1982 ; 1.015 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3176 ; 1.702 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1107 ; 2.687 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1041 ; 3.993 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 3FN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : KURCHATOV SNC REMARK 200 BEAMLINE : K4.4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : MARSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27648 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 39.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2GSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (2MCL): 10.5 MG/ML REMARK 280 FDH, 0.1M NA2HPO4 PH 7.0, RESERVOIR SOLUTION (2MCL): 0.1M HEPES REMARK 280 PH 7.5, 2.2M AMMONIUM SULFATE, 2% PEG 400, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.33000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.04450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.33000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.04450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 142.87628 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.26515 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 400 REMARK 465 ALA A 401 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 13 OD1 ND2 REMARK 470 ASP A 22 CG OD1 OD2 REMARK 470 ASP A 23 OD1 OD2 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 28 OD1 OD2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 GLN A 66 CG CD OE1 NE2 REMARK 470 LYS A 113 CE NZ REMARK 470 LYS A 115 CD CE NZ REMARK 470 ARG A 222 CD NE CZ NH1 NH2 REMARK 470 GLU A 227 OE1 OE2 REMARK 470 LYS A 231 CD CE NZ REMARK 470 ASN A 234 OD1 ND2 REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 LYS A 271 CD CE NZ REMARK 470 ARG A 275 NE CZ NH1 NH2 REMARK 470 ARG A 301 NE CZ NH1 NH2 REMARK 470 ARG A 359 NE CZ NH1 NH2 REMARK 470 HIS A 379 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 382 OG REMARK 470 LYS A 383 CE NZ REMARK 470 GLU A 391 CG CD OE1 OE2 REMARK 470 LYS A 395 CE NZ REMARK 470 LYS A 398 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 165.62 179.52 REMARK 500 LEU A 36 171.86 -56.40 REMARK 500 SER A 65 -3.77 -49.83 REMARK 500 LYS A 76 -22.26 -140.20 REMARK 500 VAL A 142 71.27 -103.03 REMARK 500 THR A 143 131.64 -38.91 REMARK 500 TYR A 144 -1.78 71.74 REMARK 500 ASN A 164 45.64 70.80 REMARK 500 TRP A 177 -65.76 -144.94 REMARK 500 ALA A 198 140.43 84.57 REMARK 500 ASN A 254 32.12 -143.33 REMARK 500 ALA A 283 -78.22 -93.44 REMARK 500 PRO A 316 143.70 -39.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GSD RELATED DB: PDB REMARK 900 FDH FROM MORAXELLA SP.C-1 IN HOLO-FORM REMARK 900 RELATED ID: 2NAC RELATED DB: PDB REMARK 900 FDH FROM PDEUDOMONAS SP.101 IN APO-FORM REMARK 900 RELATED ID: 2NAD RELATED DB: PDB REMARK 900 FDH FROM PDEUDOMONAS SP.101 IN HOLO-FORM REMARK 900 RELATED ID: 2FSS RELATED DB: PDB REMARK 900 FDH FROM CANDIDA BOIDINII IN APO-FORM DBREF 3FN4 A 1 401 UNP O08375 O08375_MORSP 2 402 SEQRES 1 A 401 ALA LYS VAL VAL CYS VAL LEU TYR ASP ASP PRO ILE ASN SEQRES 2 A 401 GLY TYR PRO THR SER TYR ALA ARG ASP ASP LEU PRO ARG SEQRES 3 A 401 ILE ASP LYS TYR PRO ASP GLY GLN THR LEU PRO THR PRO SEQRES 4 A 401 LYS ALA ILE ASP PHE THR PRO GLY ALA LEU LEU GLY SER SEQRES 5 A 401 VAL SER GLY GLU LEU GLY LEU ARG LYS TYR LEU GLU SER SEQRES 6 A 401 GLN GLY HIS GLU LEU VAL VAL THR SER SER LYS ASP GLY SEQRES 7 A 401 PRO ASP SER GLU LEU GLU LYS HIS LEU HIS ASP ALA GLU SEQRES 8 A 401 VAL ILE ILE SER GLN PRO PHE TRP PRO ALA TYR LEU THR SEQRES 9 A 401 ALA GLU ARG ILE ALA LYS ALA PRO LYS LEU LYS LEU ALA SEQRES 10 A 401 LEU THR ALA GLY ILE GLY SER ASP HIS VAL ASP LEU GLN SEQRES 11 A 401 ALA ALA ILE ASP ASN ASN ILE THR VAL ALA GLU VAL THR SEQRES 12 A 401 TYR CYS ASN SER ASN SER VAL ALA GLU HIS VAL VAL MET SEQRES 13 A 401 MET VAL LEU GLY LEU VAL ARG ASN TYR ILE PRO SER HIS SEQRES 14 A 401 ASP TRP ALA ARG ASN GLY GLY TRP ASN ILE ALA ASP CYS SEQRES 15 A 401 VAL ALA ARG SER TYR ASP VAL GLU GLY MET HIS VAL GLY SEQRES 16 A 401 THR VAL ALA ALA GLY ARG ILE GLY LEU ARG VAL LEU ARG SEQRES 17 A 401 LEU LEU ALA PRO PHE ASP MET HIS LEU HIS TYR THR ASP SEQRES 18 A 401 ARG HIS ARG LEU PRO GLU ALA VAL GLU LYS GLU LEU ASN SEQRES 19 A 401 LEU THR TRP HIS ALA THR ARG GLU ASP MET TYR GLY ALA SEQRES 20 A 401 CYS ASP VAL VAL THR LEU ASN CYS PRO LEU HIS PRO GLU SEQRES 21 A 401 THR GLU HIS MET ILE ASN ASP GLU THR LEU LYS LEU PHE SEQRES 22 A 401 LYS ARG GLY ALA TYR LEU VAL ASN THR ALA ARG GLY LYS SEQRES 23 A 401 LEU CYS ASP ARG ASP ALA ILE VAL ARG ALA LEU GLU SER SEQRES 24 A 401 GLY ARG LEU ALA GLY TYR ALA GLY ASP VAL TRP PHE PRO SEQRES 25 A 401 GLN PRO ALA PRO ASN ASP HIS PRO TRP ARG THR MET PRO SEQRES 26 A 401 HIS ASN GLY MET THR PRO HIS ILE SER GLY THR SER LEU SEQRES 27 A 401 SER ALA GLN THR ARG TYR ALA ALA GLY THR ARG GLU ILE SEQRES 28 A 401 LEU GLU CYS TYR PHE GLU GLY ARG PRO ILE ARG ASP GLU SEQRES 29 A 401 TYR LEU ILE VAL GLN GLY GLY GLY LEU ALA GLY VAL GLY SEQRES 30 A 401 ALA HIS SER TYR SER LYS GLY ASN ALA THR GLY GLY SER SEQRES 31 A 401 GLU GLU ALA ALA LYS TYR GLU LYS LEU ASP ALA HET GOL A 402 7 HET SO4 A 403 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *97(H2 O) HELIX 1 1 GLY A 55 GLY A 58 5 4 HELIX 2 2 LEU A 59 SER A 65 1 7 HELIX 3 3 SER A 81 LEU A 87 1 7 HELIX 4 4 THR A 104 LYS A 110 1 7 HELIX 5 5 ASP A 128 ASN A 135 1 8 HELIX 6 6 ASN A 146 ASN A 164 1 19 HELIX 7 7 ASN A 164 ASN A 174 1 11 HELIX 8 8 ASN A 178 ALA A 184 1 7 HELIX 9 9 GLY A 200 ALA A 211 1 12 HELIX 10 10 PRO A 212 ASP A 214 5 3 HELIX 11 11 PRO A 226 ASN A 234 1 9 HELIX 12 12 THR A 240 GLY A 246 1 7 HELIX 13 13 ASN A 266 LYS A 271 1 6 HELIX 14 14 ARG A 284 CYS A 288 5 5 HELIX 15 15 ASP A 289 SER A 299 1 11 HELIX 16 16 HIS A 319 THR A 323 5 5 HELIX 17 17 ILE A 333 THR A 336 5 4 HELIX 18 18 SER A 337 GLY A 358 1 22 HELIX 19 19 ARG A 362 GLU A 364 5 3 HELIX 20 20 ALA A 374 TYR A 381 1 8 HELIX 21 21 GLY A 389 TYR A 396 5 8 SHEET 1 A 7 GLU A 69 THR A 73 0 SHEET 2 A 7 LYS A 2 VAL A 6 1 N VAL A 3 O GLU A 69 SHEET 3 A 7 ALA A 90 SER A 95 1 O ILE A 94 N VAL A 6 SHEET 4 A 7 LEU A 116 THR A 119 1 O LEU A 118 N ILE A 93 SHEET 5 A 7 THR A 138 GLU A 141 1 O ALA A 140 N THR A 119 SHEET 6 A 7 LEU A 366 GLN A 369 -1 O ILE A 367 N VAL A 139 SHEET 7 A 7 GLY A 372 LEU A 373 -1 O GLY A 372 N GLN A 369 SHEET 1 B 6 THR A 236 TRP A 237 0 SHEET 2 B 6 HIS A 216 THR A 220 1 N TYR A 219 O THR A 236 SHEET 3 B 6 HIS A 193 VAL A 197 1 N VAL A 194 O HIS A 218 SHEET 4 B 6 VAL A 250 LEU A 253 1 O THR A 252 N VAL A 197 SHEET 5 B 6 ALA A 277 ASN A 281 1 O TYR A 278 N VAL A 251 SHEET 6 B 6 LEU A 302 GLY A 307 1 O ALA A 303 N ALA A 277 CISPEP 1 PHE A 311 PRO A 312 0 -5.66 CISPEP 2 GLN A 313 PRO A 314 0 -0.80 SITE 1 AC1 9 PRO A 97 ILE A 122 ASN A 146 VAL A 150 SITE 2 AC1 9 THR A 282 ARG A 284 HIS A 332 SER A 334 SITE 3 AC1 9 GLY A 335 SITE 1 AC2 6 GLY A 200 ARG A 201 ILE A 202 HOH A 460 SITE 2 AC2 6 HOH A 466 HOH A 485 CRYST1 80.660 66.089 75.551 90.00 104.13 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012398 0.000000 0.003121 0.00000 SCALE2 0.000000 0.015131 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013649 0.00000