HEADER IMMUNE SYSTEM 27-DEC-08 3FO0 TITLE CRYSTAL STRUCTURE OF HAPTEN COMPLEX OF CATALYTIC ELIMINATION ANTIBODY TITLE 2 13G5 (WILD-TYPE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATALYTIC ANTIBODY FAB 13G5 KAPPA LIGHT CHAIN CHIMERA; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FUSION PROTEIN. THE VARIABLE DOMAIN (RESIDUES 1-107) COMPND 6 IS FROM A MURINE SOURCE AND THE CONSTANT DOMAIN (RESIDUES 108-214) IS COMPND 7 FROM A HUMAN SOURCE; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CATALYTIC ANTIBODY FAB 13G5 IGG2B HEAVY CHAIN CHIMERA; COMPND 10 CHAIN: H; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: FUSION PROTEIN. THE VARIABLE DOMAIN (RESIDUES 1-113) COMPND 13 IS FROM A MURINE SOURCE AND THE CONSTANT DOMAIN (RESIDUES 114-235) IS COMPND 14 FROM A HUMAN SOURCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 4 ORGANISM_TAXID: 10090, 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P4XH-M13; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 13 ORGANISM_TAXID: 10090, 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: TOPP2; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: P4XH-M13 KEYWDS IMMUNOGLOBULIN, CATALYTIC ANTIBODY, CHIMERIC FAB, HAPTEN COMPLEX, KEYWDS 2 ACID BASE CATALYSIS, PROTON TRANSFER, IMMUNOGLOBULIN DOMAIN, IMMUNE KEYWDS 3 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.W.DEBLER,I.A.WILSON REVDAT 5 06-SEP-23 3FO0 1 REMARK REVDAT 4 01-NOV-17 3FO0 1 REMARK REVDAT 3 13-JUL-11 3FO0 1 VERSN REVDAT 2 17-NOV-09 3FO0 1 JRNL REVDAT 1 10-NOV-09 3FO0 0 JRNL AUTH E.W.DEBLER,R.MULLER,D.HILVERT,I.A.WILSON JRNL TITL AN ASPARTATE AND A WATER MOLECULE MEDIATE EFFICIENT JRNL TITL 2 ACID-BASE CATALYSIS IN A TAILORED ANTIBODY POCKET. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 18539 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19846764 JRNL DOI 10.1073/PNAS.0902700106 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 14790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 800 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1061 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3269 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.70000 REMARK 3 B22 (A**2) : -4.93000 REMARK 3 B33 (A**2) : 2.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.856 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.335 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.265 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.291 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3378 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4601 ; 1.409 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 6.670 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;36.786 ;24.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;17.004 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.128 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2535 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1287 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2195 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 152 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.209 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2190 ; 0.597 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3466 ; 0.754 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1388 ; 1.364 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1135 ; 2.039 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 107 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8058 -9.1594 -38.3325 REMARK 3 T TENSOR REMARK 3 T11: -0.1773 T22: -0.0998 REMARK 3 T33: -0.0239 T12: 0.0406 REMARK 3 T13: -0.0053 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 3.3856 L22: 5.7093 REMARK 3 L33: 2.6074 L12: 1.9969 REMARK 3 L13: -0.3534 L23: -1.2917 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: 0.2567 S13: -0.1248 REMARK 3 S21: -0.4151 S22: -0.0206 S23: 0.0370 REMARK 3 S31: 0.2236 S32: -0.1896 S33: 0.0437 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 108 L 211 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4809 -28.2564 -9.3827 REMARK 3 T TENSOR REMARK 3 T11: 0.0148 T22: -0.0027 REMARK 3 T33: 0.0951 T12: -0.0812 REMARK 3 T13: 0.0327 T23: 0.0690 REMARK 3 L TENSOR REMARK 3 L11: 2.2339 L22: 3.0598 REMARK 3 L33: 9.6273 L12: 0.4644 REMARK 3 L13: -1.6403 L23: 0.4378 REMARK 3 S TENSOR REMARK 3 S11: 0.3959 S12: -0.2524 S13: -0.1016 REMARK 3 S21: 0.8945 S22: -0.1255 S23: 0.2870 REMARK 3 S31: -0.3835 S32: -0.8926 S33: -0.2704 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 113 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4013 2.5717 -21.9344 REMARK 3 T TENSOR REMARK 3 T11: -0.1920 T22: -0.1684 REMARK 3 T33: 0.0514 T12: -0.0206 REMARK 3 T13: -0.0793 T23: 0.0441 REMARK 3 L TENSOR REMARK 3 L11: 2.5494 L22: 2.2368 REMARK 3 L33: 3.7595 L12: -0.1687 REMARK 3 L13: -2.0244 L23: 0.3523 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: 0.0009 S13: 0.0973 REMARK 3 S21: 0.2747 S22: -0.0423 S23: -0.2658 REMARK 3 S31: -0.1119 S32: -0.0185 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 114 H 227 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5195 -21.6428 -5.1770 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: -0.0361 REMARK 3 T33: -0.0830 T12: -0.0812 REMARK 3 T13: -0.0988 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.6533 L22: 9.7522 REMARK 3 L33: 2.6618 L12: -4.0583 REMARK 3 L13: -1.4807 L23: 2.0771 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: -0.2531 S13: -0.1249 REMARK 3 S21: 0.9368 S22: 0.0798 S23: -0.4387 REMARK 3 S31: 0.1148 S32: 0.2555 S33: 0.0061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FO0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000050826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15696 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 36.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.55200 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GJZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M TRIS-HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.03550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.50050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.03550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.50050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY L 217 REMARK 465 GLU L 218 REMARK 465 CYS L 219 REMARK 465 SER H 135 REMARK 465 SER H 136 REMARK 465 LYS H 137 REMARK 465 SER H 138 REMARK 465 THR H 139 REMARK 465 SER H 140 REMARK 465 GLY H 141 REMARK 465 LYS H 222 REMARK 465 SER H 223 REMARK 465 CYS H 224 REMARK 465 ASP H 225 REMARK 465 LYS H 226 REMARK 465 THR H 227 REMARK 465 HIS H 228 REMARK 465 THR H 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 56 -56.08 73.56 REMARK 500 LYS L 131 31.43 -79.20 REMARK 500 SER L 132 1.72 -150.06 REMARK 500 ASN L 143 77.52 48.14 REMARK 500 GLU L 192 8.73 -67.85 REMARK 500 LYS L 195 -61.93 -95.78 REMARK 500 SER H 15 -7.42 76.19 REMARK 500 PRO H 41 126.99 -37.73 REMARK 500 ASP H 88 -40.37 -29.08 REMARK 500 TYR H 102 -75.14 -87.08 REMARK 500 ASP H 109 -73.17 -31.28 REMARK 500 ASP H 152 60.71 65.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BZH H 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FO1 RELATED DB: PDB REMARK 900 HAPTEN COMPLEX OF CATALYTIC ELIMINATION ANTIBODY 13G5 (GLU(L39)ALA REMARK 900 MUTANT) REMARK 900 RELATED ID: 3FO2 RELATED DB: PDB REMARK 900 HAPTEN COMPLEX OF CATALYTIC ELIMINATION ANTIBODY 13G5 (GLU(L39)GLN REMARK 900 MUTANT) REMARK 900 RELATED ID: 2GJZ RELATED DB: PDB REMARK 900 CATALYTIC ELIMINATION ANTIBODY 13G5 FROM A CRYSTAL IN SPACE GROUP REMARK 900 P2(1) REMARK 900 RELATED ID: 2GK0 RELATED DB: PDB REMARK 900 CATALYTIC ELIMINATION ANTIBODY 13G5 FROM A TWINNED CRYSTAL IN SPACE REMARK 900 GROUP C2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCES OF THE FAB COMPLEXES ARE NOT REMARK 999 AVAILABLE IN ANY SEQUENCE DATABASES. DBREF 3FO0 L 1 219 PDB 3FO0 3FO0 1 219 DBREF 3FO0 H 1 229 PDB 3FO0 3FO0 1 229 SEQRES 1 L 219 GLU LEU VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER ILE VAL HIS SER ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE ASN ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 TYR CYS PHE GLN GLY SER HIS LEU PRO PRO THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 229 ASP VAL GLN LEU LEU GLU SER GLY PRO GLY LEU VAL ALA SEQRES 2 H 229 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 H 229 PHE SER LEU THR ASN TYR GLY VAL ASP TRP VAL ARG GLN SEQRES 4 H 229 PRO PRO GLY LYS GLY LEU GLU TRP VAL GLY VAL ILE TRP SEQRES 5 H 229 SER GLY GLY SER THR ASN TYR ASN SER ALA LEU MET SER SEQRES 6 H 229 ARG LEU SER ILE SER LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 H 229 PHE LEU LYS MET ASN SER LEU GLN THR ASP ASP THR ALA SEQRES 8 H 229 VAL TYR TYR CYS ALA LYS HIS TRP GLY GLY TYR TYR ILE SEQRES 9 H 229 PRO TYR GLY MET ASP HIS TRP GLY GLN GLY THR THR VAL SEQRES 10 H 229 THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 229 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 229 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 229 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 229 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 229 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 229 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 229 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 H 229 LYS SER CYS ASP LYS THR HIS THR HET BZH H 401 19 HET GOL H 501 6 HETNAM BZH 5-[(2-AMINO-1H-BENZIMIDAZOL-6-YL)AMINO]-5-OXOPENTANOIC HETNAM 2 BZH ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 BZH C12 H14 N4 O3 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *49(H2 O) HELIX 1 1 GLU L 84 LEU L 88 5 5 HELIX 2 2 SER L 126 LYS L 131 1 6 HELIX 3 3 LYS L 188 GLU L 192 1 5 HELIX 4 4 GLN H 86 THR H 90 5 5 HELIX 5 5 SER H 164 ALA H 166 5 3 HELIX 6 6 SER H 195 GLY H 198 5 4 HELIX 7 7 LYS H 209 ASN H 212 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 75 ILE L 80 -1 O LEU L 78 N ILE L 21 SHEET 4 A 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 B 6 SER L 10 SER L 14 0 SHEET 2 B 6 THR L 107 LYS L 112 1 O LYS L 108 N LEU L 11 SHEET 3 B 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 B 6 LEU L 38 GLN L 43 -1 N TYR L 41 O TYR L 92 SHEET 5 B 6 LYS L 50 TYR L 54 -1 O LYS L 50 N LEU L 42 SHEET 6 B 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 C 4 SER L 10 SER L 14 0 SHEET 2 C 4 THR L 107 LYS L 112 1 O LYS L 108 N LEU L 11 SHEET 3 C 4 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 C 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 D 4 SER L 119 PHE L 123 0 SHEET 2 D 4 THR L 134 PHE L 144 -1 O LEU L 140 N PHE L 121 SHEET 3 D 4 TYR L 178 SER L 187 -1 O LEU L 186 N ALA L 135 SHEET 4 D 4 SER L 164 VAL L 168 -1 N SER L 167 O SER L 181 SHEET 1 E 4 ALA L 158 LEU L 159 0 SHEET 2 E 4 LYS L 150 VAL L 155 -1 N VAL L 155 O ALA L 158 SHEET 3 E 4 VAL L 196 THR L 202 -1 O GLU L 200 N GLN L 152 SHEET 4 E 4 VAL L 210 ASN L 215 -1 O LYS L 212 N CYS L 199 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 F 4 GLN H 77 MET H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 F 4 LEU H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 G 6 LEU H 11 VAL H 12 0 SHEET 2 G 6 THR H 115 VAL H 119 1 O THR H 118 N VAL H 12 SHEET 3 G 6 ALA H 91 TRP H 99 -1 N ALA H 91 O VAL H 117 SHEET 4 G 6 VAL H 34 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 G 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 THR H 57 TYR H 59 -1 O ASN H 58 N VAL H 50 SHEET 1 H 4 LEU H 11 VAL H 12 0 SHEET 2 H 4 THR H 115 VAL H 119 1 O THR H 118 N VAL H 12 SHEET 3 H 4 ALA H 91 TRP H 99 -1 N ALA H 91 O VAL H 117 SHEET 4 H 4 GLY H 107 TRP H 111 -1 O HIS H 110 N LYS H 97 SHEET 1 I 4 SER H 128 LEU H 132 0 SHEET 2 I 4 THR H 143 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 I 4 TYR H 184 PRO H 193 -1 O VAL H 192 N ALA H 144 SHEET 4 I 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 J 4 SER H 128 LEU H 132 0 SHEET 2 J 4 THR H 143 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 J 4 TYR H 184 PRO H 193 -1 O VAL H 192 N ALA H 144 SHEET 4 J 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 K 3 THR H 159 TRP H 162 0 SHEET 2 K 3 ILE H 203 HIS H 208 -1 O ASN H 205 N SER H 161 SHEET 3 K 3 THR H 213 LYS H 218 -1 O VAL H 215 N VAL H 206 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.09 SSBOND 2 CYS L 139 CYS L 199 1555 1555 2.06 SSBOND 3 CYS H 22 CYS H 95 1555 1555 2.05 SSBOND 4 CYS H 148 CYS H 204 1555 1555 2.05 CISPEP 1 THR L 7 PRO L 8 0 -8.12 CISPEP 2 LEU L 99 PRO L 100 0 -4.21 CISPEP 3 TYR L 145 PRO L 146 0 1.54 CISPEP 4 PHE H 154 PRO H 155 0 -12.13 CISPEP 5 GLU H 156 PRO H 157 0 -7.00 SITE 1 AC1 14 ASP H 35 TRP H 52 HIS H 98 PRO H 105 SITE 2 AC1 14 MET H 108 SER H 169 HIS L 31 PHE L 94 SITE 3 AC1 14 GLY L 96 SER L 97 LEU L 99 PRO L 101 SITE 4 AC1 14 HOH L 226 HOH L 243 SITE 1 AC2 8 TYR H 32 GLY H 33 HIS H 98 GLY H 100 SITE 2 AC2 8 GLY H 101 TYR H 102 PRO H 105 HOH H 240 CRYST1 84.071 87.001 59.419 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011895 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016830 0.00000