HEADER BIOSYNTHETIC PROTEIN, TRANSFERASE 05-JAN-09 3FPH TITLE CRYSTAL STRUCTURE OF E81Q MUTANT OF MTNAS IN COMPLEX WITH L-GLUTAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MTNAS; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 187420; SOURCE 4 GENE: MTH675; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET101 KEYWDS THERMONICOTIANAMINE, NICOTIANAMINE, BIOSYNTHETIC PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DREYFUS,D.PIGNOL,P.ARNOUX REVDAT 4 01-NOV-23 3FPH 1 REMARK REVDAT 3 10-NOV-21 3FPH 1 REMARK SEQADV REVDAT 2 08-DEC-10 3FPH 1 JRNL REVDAT 1 06-OCT-09 3FPH 0 JRNL AUTH C.DREYFUS,D.LEMAIRE,S.MARI,D.PIGNOL,P.ARNOUX JRNL TITL CRYSTALLOGRAPHIC SNAPSHOTS OF ITERATIVE SUBSTRATE JRNL TITL 2 TRANSLOCATIONS DURING NICOTIANAMINE SYNTHESIS IN ARCHAEA JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 16180 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19805277 JRNL DOI 10.1073/PNAS.0904439106 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 61496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3067 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4454 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 713 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.733 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4344 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5872 ; 1.611 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 5.479 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;36.998 ;23.173 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 768 ;16.162 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.843 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 656 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3282 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2272 ; 0.251 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3017 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 564 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.033 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.399 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 45 ; 0.334 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2640 ; 1.008 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4272 ; 1.850 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1748 ; 3.273 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1600 ; 5.267 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96850 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61535 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 66.227 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 5.4150 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : 0.46800 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3FPE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 400MM NABR, PH 8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.09900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.25300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.89250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.25300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.09900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.89250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 266 REMARK 465 LYS A 267 REMARK 465 GLY A 268 REMARK 465 GLU A 269 REMARK 465 LEU A 270 REMARK 465 ASN A 271 REMARK 465 SER A 272 REMARK 465 LYS A 273 REMARK 465 LEU A 274 REMARK 465 GLU A 275 REMARK 465 GLY A 276 REMARK 465 LYS A 277 REMARK 465 PRO A 278 REMARK 465 ILE A 279 REMARK 465 PRO A 280 REMARK 465 ASN A 281 REMARK 465 PRO A 282 REMARK 465 LEU A 283 REMARK 465 LEU A 284 REMARK 465 GLY A 285 REMARK 465 LEU A 286 REMARK 465 ASP A 287 REMARK 465 SER A 288 REMARK 465 THR A 289 REMARK 465 ARG A 290 REMARK 465 THR A 291 REMARK 465 GLY A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 MET B 1 REMARK 465 ASP B 266 REMARK 465 LYS B 267 REMARK 465 GLY B 268 REMARK 465 GLU B 269 REMARK 465 LEU B 270 REMARK 465 ASN B 271 REMARK 465 SER B 272 REMARK 465 LYS B 273 REMARK 465 LEU B 274 REMARK 465 GLU B 275 REMARK 465 GLY B 276 REMARK 465 LYS B 277 REMARK 465 PRO B 278 REMARK 465 ILE B 279 REMARK 465 PRO B 280 REMARK 465 ASN B 281 REMARK 465 PRO B 282 REMARK 465 LEU B 283 REMARK 465 LEU B 284 REMARK 465 GLY B 285 REMARK 465 LEU B 286 REMARK 465 ASP B 287 REMARK 465 SER B 288 REMARK 465 THR B 289 REMARK 465 ARG B 290 REMARK 465 THR B 291 REMARK 465 GLY B 292 REMARK 465 HIS B 293 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 109 O HOH A 718 1.11 REMARK 500 SD MET A 147 O HOH A 721 1.93 REMARK 500 CB ASN A 175 O HOH A 709 2.00 REMARK 500 OD2 ASP A 172 O HOH A 605 2.12 REMARK 500 O HOH A 575 O HOH A 608 2.16 REMARK 500 NH1 ARG B 210 O HOH B 371 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 202 O HOH A 369 3655 1.55 REMARK 500 CZ ARG B 202 O HOH A 369 3655 1.78 REMARK 500 NH2 ARG B 202 O HOH A 510 3655 1.99 REMARK 500 O HOH A 718 O HOH B 331 3545 2.02 REMARK 500 NH2 ARG B 202 O HOH A 369 3655 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 188 CG GLU A 188 CD 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 106 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 217 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 217 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG B 99 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG B 99 NE - CZ - NH2 ANGL. DEV. = -7.8 DEGREES REMARK 500 ARG B 106 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 217 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 217 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 3 42.94 -155.43 REMARK 500 TYR A 231 149.56 -173.99 REMARK 500 CYS B 3 42.82 -147.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 299 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FPE RELATED DB: PDB REMARK 900 MTNAS IN COMPLEX WITH THERMONICOTIANAMINE REMARK 900 RELATED ID: 3FPF RELATED DB: PDB REMARK 900 MTNAS IN COMPLEX WITH MTA AND TNA REMARK 900 RELATED ID: 3FPG RELATED DB: PDB REMARK 900 E81Q MUTANT OF MTNAS REMARK 900 RELATED ID: 3FPJ RELATED DB: PDB REMARK 900 E81Q MUTANT OF MTNAS IN COMPLEX WITH S-ADENOSYLMETHIONINE DBREF 3FPH A 1 266 UNP O26771 O26771_METTH 1 266 DBREF 3FPH B 1 266 UNP O26771 O26771_METTH 1 266 SEQADV 3FPH GLN A 81 UNP O26771 GLU 81 ENGINEERED MUTATION SEQADV 3FPH LYS A 267 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLY A 268 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLU A 269 UNP O26771 EXPRESSION TAG SEQADV 3FPH LEU A 270 UNP O26771 EXPRESSION TAG SEQADV 3FPH ASN A 271 UNP O26771 EXPRESSION TAG SEQADV 3FPH SER A 272 UNP O26771 EXPRESSION TAG SEQADV 3FPH LYS A 273 UNP O26771 EXPRESSION TAG SEQADV 3FPH LEU A 274 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLU A 275 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLY A 276 UNP O26771 EXPRESSION TAG SEQADV 3FPH LYS A 277 UNP O26771 EXPRESSION TAG SEQADV 3FPH PRO A 278 UNP O26771 EXPRESSION TAG SEQADV 3FPH ILE A 279 UNP O26771 EXPRESSION TAG SEQADV 3FPH PRO A 280 UNP O26771 EXPRESSION TAG SEQADV 3FPH ASN A 281 UNP O26771 EXPRESSION TAG SEQADV 3FPH PRO A 282 UNP O26771 EXPRESSION TAG SEQADV 3FPH LEU A 283 UNP O26771 EXPRESSION TAG SEQADV 3FPH LEU A 284 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLY A 285 UNP O26771 EXPRESSION TAG SEQADV 3FPH LEU A 286 UNP O26771 EXPRESSION TAG SEQADV 3FPH ASP A 287 UNP O26771 EXPRESSION TAG SEQADV 3FPH SER A 288 UNP O26771 EXPRESSION TAG SEQADV 3FPH THR A 289 UNP O26771 EXPRESSION TAG SEQADV 3FPH ARG A 290 UNP O26771 EXPRESSION TAG SEQADV 3FPH THR A 291 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLY A 292 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS A 293 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS A 294 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS A 295 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS A 296 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS A 297 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS A 298 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLN B 81 UNP O26771 GLU 81 ENGINEERED MUTATION SEQADV 3FPH LYS B 267 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLY B 268 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLU B 269 UNP O26771 EXPRESSION TAG SEQADV 3FPH LEU B 270 UNP O26771 EXPRESSION TAG SEQADV 3FPH ASN B 271 UNP O26771 EXPRESSION TAG SEQADV 3FPH SER B 272 UNP O26771 EXPRESSION TAG SEQADV 3FPH LYS B 273 UNP O26771 EXPRESSION TAG SEQADV 3FPH LEU B 274 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLU B 275 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLY B 276 UNP O26771 EXPRESSION TAG SEQADV 3FPH LYS B 277 UNP O26771 EXPRESSION TAG SEQADV 3FPH PRO B 278 UNP O26771 EXPRESSION TAG SEQADV 3FPH ILE B 279 UNP O26771 EXPRESSION TAG SEQADV 3FPH PRO B 280 UNP O26771 EXPRESSION TAG SEQADV 3FPH ASN B 281 UNP O26771 EXPRESSION TAG SEQADV 3FPH PRO B 282 UNP O26771 EXPRESSION TAG SEQADV 3FPH LEU B 283 UNP O26771 EXPRESSION TAG SEQADV 3FPH LEU B 284 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLY B 285 UNP O26771 EXPRESSION TAG SEQADV 3FPH LEU B 286 UNP O26771 EXPRESSION TAG SEQADV 3FPH ASP B 287 UNP O26771 EXPRESSION TAG SEQADV 3FPH SER B 288 UNP O26771 EXPRESSION TAG SEQADV 3FPH THR B 289 UNP O26771 EXPRESSION TAG SEQADV 3FPH ARG B 290 UNP O26771 EXPRESSION TAG SEQADV 3FPH THR B 291 UNP O26771 EXPRESSION TAG SEQADV 3FPH GLY B 292 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS B 293 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS B 294 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS B 295 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS B 296 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS B 297 UNP O26771 EXPRESSION TAG SEQADV 3FPH HIS B 298 UNP O26771 EXPRESSION TAG SEQRES 1 A 298 MET SER CYS TYR ILE TYR TRP ASP LYS ILE LYS ARG ILE SEQRES 2 A 298 ALA SER ARG LEU GLU GLY MET ASN TYR HIS PHE ASP GLU SEQRES 3 A 298 MET ASP THR SER GLY VAL MET PRO LEU LEU ASP GLU ILE SEQRES 4 A 298 GLU GLU ILE ALA HIS ASP SER THR ILE ASP PHE GLU SER SEQRES 5 A 298 ALA LYS HIS ILE LEU ASP ASP ALA GLU MET ASN HIS ALA SEQRES 6 A 298 LEU SER LEU ILE ARG LYS PHE TYR VAL ASN LEU GLY MET SEQRES 7 A 298 LYS LEU GLN MET GLU LYS ALA GLN GLU VAL ILE GLU SER SEQRES 8 A 298 ASP SER PRO TRP GLU THR LEU ARG SER PHE TYR PHE TYR SEQRES 9 A 298 PRO ARG TYR LEU GLU LEU LEU LYS ASN GLU ALA ALA LEU SEQRES 10 A 298 GLY ARG PHE ARG ARG GLY GLU ARG ALA VAL PHE ILE GLY SEQRES 11 A 298 GLY GLY PRO LEU PRO LEU THR GLY ILE LEU LEU SER HIS SEQRES 12 A 298 VAL TYR GLY MET ARG VAL ASN VAL VAL GLU ILE GLU PRO SEQRES 13 A 298 ASP ILE ALA GLU LEU SER ARG LYS VAL ILE GLU GLY LEU SEQRES 14 A 298 GLY VAL ASP GLY VAL ASN VAL ILE THR GLY ASP GLU THR SEQRES 15 A 298 VAL ILE ASP GLY LEU GLU PHE ASP VAL LEU MET VAL ALA SEQRES 16 A 298 ALA LEU ALA GLU PRO LYS ARG ARG VAL PHE ARG ASN ILE SEQRES 17 A 298 HIS ARG TYR VAL ASP THR GLU THR ARG ILE ILE TYR ARG SEQRES 18 A 298 THR TYR THR GLY MET ARG ALA ILE LEU TYR ALA PRO VAL SEQRES 19 A 298 SER ASP ASP ASP ILE THR GLY PHE ARG ARG ALA GLY VAL SEQRES 20 A 298 VAL LEU PRO SER GLY LYS VAL ASN ASN THR SER VAL LEU SEQRES 21 A 298 VAL PHE LYS CYS PRO ASP LYS GLY GLU LEU ASN SER LYS SEQRES 22 A 298 LEU GLU GLY LYS PRO ILE PRO ASN PRO LEU LEU GLY LEU SEQRES 23 A 298 ASP SER THR ARG THR GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 298 MET SER CYS TYR ILE TYR TRP ASP LYS ILE LYS ARG ILE SEQRES 2 B 298 ALA SER ARG LEU GLU GLY MET ASN TYR HIS PHE ASP GLU SEQRES 3 B 298 MET ASP THR SER GLY VAL MET PRO LEU LEU ASP GLU ILE SEQRES 4 B 298 GLU GLU ILE ALA HIS ASP SER THR ILE ASP PHE GLU SER SEQRES 5 B 298 ALA LYS HIS ILE LEU ASP ASP ALA GLU MET ASN HIS ALA SEQRES 6 B 298 LEU SER LEU ILE ARG LYS PHE TYR VAL ASN LEU GLY MET SEQRES 7 B 298 LYS LEU GLN MET GLU LYS ALA GLN GLU VAL ILE GLU SER SEQRES 8 B 298 ASP SER PRO TRP GLU THR LEU ARG SER PHE TYR PHE TYR SEQRES 9 B 298 PRO ARG TYR LEU GLU LEU LEU LYS ASN GLU ALA ALA LEU SEQRES 10 B 298 GLY ARG PHE ARG ARG GLY GLU ARG ALA VAL PHE ILE GLY SEQRES 11 B 298 GLY GLY PRO LEU PRO LEU THR GLY ILE LEU LEU SER HIS SEQRES 12 B 298 VAL TYR GLY MET ARG VAL ASN VAL VAL GLU ILE GLU PRO SEQRES 13 B 298 ASP ILE ALA GLU LEU SER ARG LYS VAL ILE GLU GLY LEU SEQRES 14 B 298 GLY VAL ASP GLY VAL ASN VAL ILE THR GLY ASP GLU THR SEQRES 15 B 298 VAL ILE ASP GLY LEU GLU PHE ASP VAL LEU MET VAL ALA SEQRES 16 B 298 ALA LEU ALA GLU PRO LYS ARG ARG VAL PHE ARG ASN ILE SEQRES 17 B 298 HIS ARG TYR VAL ASP THR GLU THR ARG ILE ILE TYR ARG SEQRES 18 B 298 THR TYR THR GLY MET ARG ALA ILE LEU TYR ALA PRO VAL SEQRES 19 B 298 SER ASP ASP ASP ILE THR GLY PHE ARG ARG ALA GLY VAL SEQRES 20 B 298 VAL LEU PRO SER GLY LYS VAL ASN ASN THR SER VAL LEU SEQRES 21 B 298 VAL PHE LYS CYS PRO ASP LYS GLY GLU LEU ASN SER LYS SEQRES 22 B 298 LEU GLU GLY LYS PRO ILE PRO ASN PRO LEU LEU GLY LEU SEQRES 23 B 298 ASP SER THR ARG THR GLY HIS HIS HIS HIS HIS HIS HET GLU A 302 20 HET NA A 299 1 HET GLU B 302 20 HET NA B 299 1 HETNAM GLU GLUTAMIC ACID HETNAM NA SODIUM ION FORMUL 3 GLU 2(C5 H9 N O4) FORMUL 4 NA 2(NA 1+) FORMUL 7 HOH *713(H2 O) HELIX 1 1 TYR A 4 MET A 20 1 17 HELIX 2 2 ASP A 28 HIS A 44 1 17 HELIX 3 3 ASP A 49 ASP A 59 1 11 HELIX 4 4 MET A 62 SER A 91 1 30 HELIX 5 5 SER A 93 SER A 100 1 8 HELIX 6 6 PHE A 103 GLY A 118 1 16 HELIX 7 7 PRO A 135 VAL A 144 1 10 HELIX 8 8 GLU A 155 GLY A 170 1 16 HELIX 9 9 ASP A 180 LEU A 187 5 8 HELIX 10 10 PRO A 200 VAL A 212 1 13 HELIX 11 11 THR A 224 LEU A 230 5 7 HELIX 12 12 TYR B 4 ASN B 21 1 18 HELIX 13 13 THR B 29 GLY B 31 5 3 HELIX 14 14 VAL B 32 HIS B 44 1 13 HELIX 15 15 ASP B 49 ASP B 58 1 10 HELIX 16 16 ASP B 59 GLU B 61 5 3 HELIX 17 17 MET B 62 SER B 91 1 30 HELIX 18 18 SER B 93 SER B 100 1 8 HELIX 19 19 PHE B 103 GLY B 118 1 16 HELIX 20 20 PRO B 135 VAL B 144 1 10 HELIX 21 21 GLU B 155 GLY B 170 1 16 HELIX 22 22 ASP B 180 LEU B 187 5 8 HELIX 23 23 PRO B 200 VAL B 212 1 13 HELIX 24 24 THR B 224 LEU B 230 5 7 HELIX 25 25 ASP B 236 THR B 240 5 5 SHEET 1 A 7 VAL A 174 THR A 178 0 SHEET 2 A 7 ARG A 148 GLU A 153 1 N VAL A 151 O ASN A 175 SHEET 3 A 7 ARG A 125 ILE A 129 1 N PHE A 128 O VAL A 152 SHEET 4 A 7 VAL A 191 VAL A 194 1 O MET A 193 N ILE A 129 SHEET 5 A 7 ARG A 217 THR A 222 1 O ILE A 219 N LEU A 192 SHEET 6 A 7 THR A 257 LYS A 263 -1 O VAL A 261 N ILE A 218 SHEET 7 A 7 PHE A 242 VAL A 248 -1 N ALA A 245 O LEU A 260 SHEET 1 B 7 VAL B 174 THR B 178 0 SHEET 2 B 7 ARG B 148 GLU B 153 1 N VAL B 151 O ASN B 175 SHEET 3 B 7 ARG B 125 ILE B 129 1 N PHE B 128 O VAL B 152 SHEET 4 B 7 VAL B 191 VAL B 194 1 O MET B 193 N ILE B 129 SHEET 5 B 7 ARG B 217 THR B 222 1 O ILE B 219 N LEU B 192 SHEET 6 B 7 THR B 257 LYS B 263 -1 O VAL B 261 N ILE B 218 SHEET 7 B 7 PHE B 242 VAL B 248 -1 N ALA B 245 O LEU B 260 SSBOND 1 CYS A 3 CYS B 264 1555 1555 2.07 SSBOND 2 CYS A 264 CYS B 3 1555 1555 2.03 CISPEP 1 GLU A 199 PRO A 200 0 -3.37 CISPEP 2 GLU B 199 PRO B 200 0 -2.12 SITE 1 AC1 14 GLN A 81 PHE A 101 TYR A 107 PHE A 128 SITE 2 AC1 14 GLY A 131 LEU A 134 PRO A 135 LEU A 136 SITE 3 AC1 14 THR A 137 NA A 299 HOH A 312 HOH A 473 SITE 4 AC1 14 HOH A 553 HOH A 725 SITE 1 AC2 3 GLN A 81 GLY A 131 LEU A 134 SITE 1 AC3 14 GLN B 81 PHE B 101 TYR B 107 PHE B 128 SITE 2 AC3 14 GLY B 131 LEU B 134 PRO B 135 LEU B 136 SITE 3 AC3 14 THR B 137 NA B 299 HOH B 329 HOH B 468 SITE 4 AC3 14 HOH B 692 HOH B 693 SITE 1 AC4 3 GLN B 81 GLY B 131 LEU B 134 CRYST1 66.198 69.785 146.506 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014330 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006826 0.00000