HEADER HYDROLASE 06-JAN-09 3FPS TITLE THE STRUCTURE OF SARCOPLASMIC RETICULUM CA2+-ATPASE BOUND TO TITLE 2 CYCLOPIAZONIC AND ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERCA1, CA(2+) ATPASE, CALCIUM PUMP 1, CALCIUM-TRANSPORTING COMPND 5 ATPASE SARCOPLASMIC RETICULUM TYPE, FAST TWITCH SKELETAL MUSCLE COMPND 6 ISOFORM, SR CA(2+)-ATPASE 1, ENDOPLASMIC RETICULUM CLASS 1/2 CA(2+) COMPND 7 ATPASE; COMPND 8 EC: 3.6.3.8 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 TISSUE: TWITCH SKELETAL MUSCLE KEYWDS CALCIUM-TRANSPORTING ATPASE SARCOPLASMIC RETICULUM, FAST TWITCH KEYWDS 2 SKELETAL MUSCLE ISOFORM, ENDOPLASMIC RETICULUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.MONCOQ,J.P.MORTH,M.BUBLITZ,M.LAURSEN,P.NISSEN,H.S.YOUNG REVDAT 5 06-NOV-24 3FPS 1 REMARK REVDAT 4 01-NOV-23 3FPS 1 REMARK LINK REVDAT 3 09-AUG-17 3FPS 1 JRNL REVDAT 2 02-APR-14 3FPS 1 JRNL VERSN REVDAT 1 07-APR-09 3FPS 0 JRNL AUTH M.LAURSEN,M.BUBLITZ,K.MONCOQ,C.OLESEN,J.V.MOLLER,H.S.YOUNG, JRNL AUTH 2 P.NISSEN,J.P.MORTH JRNL TITL CYCLOPIAZONIC ACID IS COMPLEXED TO A DIVALENT METAL ION WHEN JRNL TITL 2 BOUND TO THE SARCOPLASMIC RETICULUM CA2+-ATPASE. JRNL REF J.BIOL.CHEM. V. 284 13513 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19289472 JRNL DOI 10.1074/JBC.C900031200 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 30110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8918 - 7.0671 0.99 2657 137 0.1987 0.2452 REMARK 3 2 7.0671 - 5.6307 0.99 2616 138 0.2347 0.2403 REMARK 3 3 5.6307 - 4.9252 0.99 2628 142 0.1962 0.2164 REMARK 3 4 4.9252 - 4.4778 0.99 2591 142 0.1895 0.1993 REMARK 3 5 4.4778 - 4.1584 0.99 2582 132 0.1880 0.2309 REMARK 3 6 4.1584 - 3.9142 0.99 2599 153 0.2081 0.2128 REMARK 3 7 3.9142 - 3.7189 0.99 2592 122 0.2260 0.2317 REMARK 3 8 3.7189 - 3.5575 0.99 2595 141 0.2560 0.3097 REMARK 3 9 3.5575 - 3.4209 0.99 2575 145 0.2569 0.2476 REMARK 3 10 3.4209 - 3.3031 0.99 2548 137 0.2932 0.2734 REMARK 3 11 3.3031 - 3.2000 0.99 2595 143 0.3296 0.2886 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.25 REMARK 3 B_SOL : 71.75 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 93.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 141.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98100 REMARK 3 B22 (A**2) : 3.00200 REMARK 3 B33 (A**2) : -2.02100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.35500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7871 REMARK 3 ANGLE : 1.255 10687 REMARK 3 CHIRALITY : 0.092 1235 REMARK 3 PLANARITY : 0.010 1363 REMARK 3 DIHEDRAL : 21.895 2932 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 45:122 OR RESID 238:359) OR CHAIN REMARK 3 A AND (RESID 1001) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9515 -15.7280 14.2946 REMARK 3 T TENSOR REMARK 3 T11: 1.7602 T22: 1.3678 REMARK 3 T33: 0.6634 T12: -0.0933 REMARK 3 T13: -0.0353 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.7547 L22: -0.5301 REMARK 3 L33: 1.0008 L12: -0.4459 REMARK 3 L13: 0.4501 L23: -0.9431 REMARK 3 S TENSOR REMARK 3 S11: 0.1695 S12: 0.7659 S13: -0.0776 REMARK 3 S21: -0.6815 S22: 0.0161 S23: 0.0004 REMARK 3 S31: 0.3313 S32: 0.2099 S33: -0.1688 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 742:994) OR CHAIN A AND (RESID REMARK 3 995:996) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4573 -3.9226 2.2547 REMARK 3 T TENSOR REMARK 3 T11: 2.6402 T22: 1.7889 REMARK 3 T33: 0.5990 T12: 0.2299 REMARK 3 T13: -0.3279 T23: 0.0967 REMARK 3 L TENSOR REMARK 3 L11: 1.2703 L22: 0.2908 REMARK 3 L33: 0.6755 L12: 0.2367 REMARK 3 L13: 0.4042 L23: 1.5018 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.7655 S13: -0.0068 REMARK 3 S21: -1.3084 S22: -0.1894 S23: 0.0859 REMARK 3 S31: -0.8669 S32: -0.4073 S33: 0.2234 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 1:44 OR RESID 123:237) REMARK 3 ORIGIN FOR THE GROUP (A): 46.5566 -20.6309 59.2032 REMARK 3 T TENSOR REMARK 3 T11: 0.5356 T22: 0.8071 REMARK 3 T33: 1.0085 T12: 0.0089 REMARK 3 T13: 0.0537 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: -0.0690 L22: 3.4091 REMARK 3 L33: 3.7928 L12: -0.8074 REMARK 3 L13: 0.5874 L23: 0.1249 REMARK 3 S TENSOR REMARK 3 S11: 0.0745 S12: 0.0954 S13: 0.2336 REMARK 3 S21: 0.1133 S22: 0.0260 S23: -0.9177 REMARK 3 S31: 0.1563 S32: 0.7848 S33: -0.0972 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 360:741) OR CHAIN A AND (RESID REMARK 3 1002) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6273 1.9556 67.0641 REMARK 3 T TENSOR REMARK 3 T11: 0.5353 T22: 0.5036 REMARK 3 T33: 0.7072 T12: -0.0205 REMARK 3 T13: 0.0040 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 1.1614 L22: 2.5899 REMARK 3 L33: 3.1842 L12: -0.3053 REMARK 3 L13: -0.3121 L23: 1.9004 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: 0.0240 S13: 0.1494 REMARK 3 S21: -0.1033 S22: -0.0733 S23: -0.0214 REMARK 3 S31: -0.1812 S32: 0.0407 S33: -0.0119 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-05; 25-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; ALS REMARK 200 BEAMLINE : 8.3.1; 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587; 1.0 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30131 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2OA0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.75-3% PEG3350, 25% GLYCEROL, 20MM REMARK 280 MGCL2, 0.1MM EGTA, 20MM MES, PH 6.1, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 284K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.25000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MG MG A 996 O2 CZA A 1001 1.65 REMARK 500 OG SER A 287 CG ARG A 290 1.93 REMARK 500 O PRO A 518 N GLY A 520 1.97 REMARK 500 O ILE A 307 OD1 ASN A 768 2.02 REMARK 500 O ILE A 307 CG ASN A 768 2.03 REMARK 500 O HIS A 32 N GLU A 34 2.07 REMARK 500 OH TYR A 130 OE2 GLU A 152 2.09 REMARK 500 CB SER A 287 CB ARG A 290 2.11 REMARK 500 O ILE A 307 ND2 ASN A 768 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 139 OD1 ASP A 650 1655 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 308 C - N - CD ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 57.98 -95.24 REMARK 500 HIS A 32 -79.34 -60.59 REMARK 500 LEU A 33 -26.75 -26.35 REMARK 500 SER A 48 129.93 164.00 REMARK 500 LEU A 49 2.84 -66.39 REMARK 500 ALA A 76 -90.21 -67.16 REMARK 500 TRP A 77 -143.38 -160.45 REMARK 500 PHE A 78 -129.03 -105.52 REMARK 500 GLU A 82 -134.02 -127.65 REMARK 500 ILE A 85 -58.73 1.31 REMARK 500 ALA A 87 -71.41 -72.54 REMARK 500 VAL A 106 -79.09 -141.83 REMARK 500 GLU A 109 58.33 -115.32 REMARK 500 ARG A 110 120.49 -36.25 REMARK 500 ALA A 112 -104.41 -97.05 REMARK 500 ARG A 134 -146.79 -156.24 REMARK 500 LYS A 135 -16.44 -159.64 REMARK 500 GLN A 177 35.15 -85.44 REMARK 500 THR A 181 -66.05 -91.91 REMARK 500 SER A 184 -44.12 -13.14 REMARK 500 ARG A 198 60.24 -111.54 REMARK 500 TRP A 288 -96.91 -46.78 REMARK 500 ILE A 289 -37.77 -26.52 REMARK 500 TYR A 295 -10.14 -47.67 REMARK 500 ILE A 307 -174.56 -58.95 REMARK 500 PRO A 308 5.07 -159.10 REMARK 500 GLU A 309 -47.31 23.13 REMARK 500 LEU A 311 -75.33 -9.37 REMARK 500 ASN A 330 5.88 83.06 REMARK 500 ARG A 334 -63.83 -91.72 REMARK 500 SER A 338 -18.98 -44.89 REMARK 500 LYS A 352 -76.98 -78.07 REMARK 500 ASN A 359 27.03 48.37 REMARK 500 GLN A 360 70.88 -101.82 REMARK 500 CYS A 364 15.89 -155.38 REMARK 500 ASP A 370 -64.10 -100.42 REMARK 500 PRO A 391 16.70 -63.74 REMARK 500 LYS A 400 122.09 -170.66 REMARK 500 CYS A 420 40.03 -96.34 REMARK 500 THR A 430 -73.91 -60.97 REMARK 500 ALA A 470 -72.12 -48.05 REMARK 500 GLU A 482 -84.21 -68.03 REMARK 500 ALA A 501 -73.25 -120.13 REMARK 500 LYS A 502 -168.67 -104.06 REMARK 500 SER A 503 63.95 -58.07 REMARK 500 SER A 504 -133.30 -94.27 REMARK 500 ARG A 505 -44.42 -136.74 REMARK 500 ALA A 506 158.14 -38.05 REMARK 500 ALA A 507 -165.24 172.36 REMARK 500 VAL A 508 -18.81 60.15 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 83 THR A 84 147.63 REMARK 500 THR A 86 ALA A 87 -144.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 996 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 56 OE1 REMARK 620 2 CZA A1001 O1 81.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 995 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A1002 O3B REMARK 620 2 ADP A1002 O2B 66.5 REMARK 620 3 ADP A1002 O1B 60.5 55.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 995 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 996 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CZA A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OA0 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 DPEDERRK (994-1001) HAVE BEEN REPLACED DURING EXON SPLICING WITH G. REMARK 999 UNIPROT P04191 SHOWS THAT DPEDERRK (994-1001)-> G IN ISOFORM SERCA1A DBREF 3FPS A 1 994 UNP P04191 AT2A1_RABIT 1 1001 SEQADV 3FPS GLY A 994 UNP P04191 ASP 994 SEE REMARK 999 SEQRES 1 A 994 MET GLU ALA ALA HIS SER LYS SER THR GLU GLU CYS LEU SEQRES 2 A 994 ALA TYR PHE GLY VAL SER GLU THR THR GLY LEU THR PRO SEQRES 3 A 994 ASP GLN VAL LYS ARG HIS LEU GLU LYS TYR GLY HIS ASN SEQRES 4 A 994 GLU LEU PRO ALA GLU GLU GLY LYS SER LEU TRP GLU LEU SEQRES 5 A 994 VAL ILE GLU GLN PHE GLU ASP LEU LEU VAL ARG ILE LEU SEQRES 6 A 994 LEU LEU ALA ALA CYS ILE SER PHE VAL LEU ALA TRP PHE SEQRES 7 A 994 GLU GLU GLY GLU GLU THR ILE THR ALA PHE VAL GLU PRO SEQRES 8 A 994 PHE VAL ILE LEU LEU ILE LEU ILE ALA ASN ALA ILE VAL SEQRES 9 A 994 GLY VAL TRP GLN GLU ARG ASN ALA GLU ASN ALA ILE GLU SEQRES 10 A 994 ALA LEU LYS GLU TYR GLU PRO GLU MET GLY LYS VAL TYR SEQRES 11 A 994 ARG ALA ASP ARG LYS SER VAL GLN ARG ILE LYS ALA ARG SEQRES 12 A 994 ASP ILE VAL PRO GLY ASP ILE VAL GLU VAL ALA VAL GLY SEQRES 13 A 994 ASP LYS VAL PRO ALA ASP ILE ARG ILE LEU SER ILE LYS SEQRES 14 A 994 SER THR THR LEU ARG VAL ASP GLN SER ILE LEU THR GLY SEQRES 15 A 994 GLU SER VAL SER VAL ILE LYS HIS THR GLU PRO VAL PRO SEQRES 16 A 994 ASP PRO ARG ALA VAL ASN GLN ASP LYS LYS ASN MET LEU SEQRES 17 A 994 PHE SER GLY THR ASN ILE ALA ALA GLY LYS ALA LEU GLY SEQRES 18 A 994 ILE VAL ALA THR THR GLY VAL SER THR GLU ILE GLY LYS SEQRES 19 A 994 ILE ARG ASP GLN MET ALA ALA THR GLU GLN ASP LYS THR SEQRES 20 A 994 PRO LEU GLN GLN LYS LEU ASP GLU PHE GLY GLU GLN LEU SEQRES 21 A 994 SER LYS VAL ILE SER LEU ILE CYS VAL ALA VAL TRP LEU SEQRES 22 A 994 ILE ASN ILE GLY HIS PHE ASN ASP PRO VAL HIS GLY GLY SEQRES 23 A 994 SER TRP ILE ARG GLY ALA ILE TYR TYR PHE LYS ILE ALA SEQRES 24 A 994 VAL ALA LEU ALA VAL ALA ALA ILE PRO GLU GLY LEU PRO SEQRES 25 A 994 ALA VAL ILE THR THR CYS LEU ALA LEU GLY THR ARG ARG SEQRES 26 A 994 MET ALA LYS LYS ASN ALA ILE VAL ARG SER LEU PRO SER SEQRES 27 A 994 VAL GLU THR LEU GLY CYS THR SER VAL ILE CYS SER ASP SEQRES 28 A 994 LYS THR GLY THR LEU THR THR ASN GLN MET SER VAL CYS SEQRES 29 A 994 LYS MET PHE ILE ILE ASP LYS VAL ASP GLY ASP PHE CYS SEQRES 30 A 994 SER LEU ASN GLU PHE SER ILE THR GLY SER THR TYR ALA SEQRES 31 A 994 PRO GLU GLY GLU VAL LEU LYS ASN ASP LYS PRO ILE ARG SEQRES 32 A 994 SER GLY GLN PHE ASP GLY LEU VAL GLU LEU ALA THR ILE SEQRES 33 A 994 CYS ALA LEU CYS ASN ASP SER SER LEU ASP PHE ASN GLU SEQRES 34 A 994 THR LYS GLY VAL TYR GLU LYS VAL GLY GLU ALA THR GLU SEQRES 35 A 994 THR ALA LEU THR THR LEU VAL GLU LYS MET ASN VAL PHE SEQRES 36 A 994 ASN THR GLU VAL ARG ASN LEU SER LYS VAL GLU ARG ALA SEQRES 37 A 994 ASN ALA CYS ASN SER VAL ILE ARG GLN LEU MET LYS LYS SEQRES 38 A 994 GLU PHE THR LEU GLU PHE SER ARG ASP ARG LYS SER MET SEQRES 39 A 994 SER VAL TYR CYS SER PRO ALA LYS SER SER ARG ALA ALA SEQRES 40 A 994 VAL GLY ASN LYS MET PHE VAL LYS GLY ALA PRO GLU GLY SEQRES 41 A 994 VAL ILE ASP ARG CYS ASN TYR VAL ARG VAL GLY THR THR SEQRES 42 A 994 ARG VAL PRO MET THR GLY PRO VAL LYS GLU LYS ILE LEU SEQRES 43 A 994 SER VAL ILE LYS GLU TRP GLY THR GLY ARG ASP THR LEU SEQRES 44 A 994 ARG CYS LEU ALA LEU ALA THR ARG ASP THR PRO PRO LYS SEQRES 45 A 994 ARG GLU GLU MET VAL LEU ASP ASP SER SER ARG PHE MET SEQRES 46 A 994 GLU TYR GLU THR ASP LEU THR PHE VAL GLY VAL VAL GLY SEQRES 47 A 994 MET LEU ASP PRO PRO ARG LYS GLU VAL MET GLY SER ILE SEQRES 48 A 994 GLN LEU CYS ARG ASP ALA GLY ILE ARG VAL ILE MET ILE SEQRES 49 A 994 THR GLY ASP ASN LYS GLY THR ALA ILE ALA ILE CYS ARG SEQRES 50 A 994 ARG ILE GLY ILE PHE GLY GLU ASN GLU GLU VAL ALA ASP SEQRES 51 A 994 ARG ALA TYR THR GLY ARG GLU PHE ASP ASP LEU PRO LEU SEQRES 52 A 994 ALA GLU GLN ARG GLU ALA CYS ARG ARG ALA CYS CYS PHE SEQRES 53 A 994 ALA ARG VAL GLU PRO SER HIS LYS SER LYS ILE VAL GLU SEQRES 54 A 994 TYR LEU GLN SER TYR ASP GLU ILE THR ALA MET THR GLY SEQRES 55 A 994 ASP GLY VAL ASN ASP ALA PRO ALA LEU LYS LYS ALA GLU SEQRES 56 A 994 ILE GLY ILE ALA MET GLY SER GLY THR ALA VAL ALA LYS SEQRES 57 A 994 THR ALA SER GLU MET VAL LEU ALA ASP ASP ASN PHE SER SEQRES 58 A 994 THR ILE VAL ALA ALA VAL GLU GLU GLY ARG ALA ILE TYR SEQRES 59 A 994 ASN ASN MET LYS GLN PHE ILE ARG TYR LEU ILE SER SER SEQRES 60 A 994 ASN VAL GLY GLU VAL VAL CYS ILE PHE LEU THR ALA ALA SEQRES 61 A 994 LEU GLY LEU PRO GLU ALA LEU ILE PRO VAL GLN LEU LEU SEQRES 62 A 994 TRP VAL ASN LEU VAL THR ASP GLY LEU PRO ALA THR ALA SEQRES 63 A 994 LEU GLY PHE ASN PRO PRO ASP LEU ASP ILE MET ASP ARG SEQRES 64 A 994 PRO PRO ARG SER PRO LYS GLU PRO LEU ILE SER GLY TRP SEQRES 65 A 994 LEU PHE PHE ARG TYR MET ALA ILE GLY GLY TYR VAL GLY SEQRES 66 A 994 ALA ALA THR VAL GLY ALA ALA ALA TRP TRP PHE MET TYR SEQRES 67 A 994 ALA GLU ASP GLY PRO GLY VAL THR TYR HIS GLN LEU THR SEQRES 68 A 994 HIS PHE MET GLN CYS THR GLU ASP HIS PRO HIS PHE GLU SEQRES 69 A 994 GLY LEU ASP CYS GLU ILE PHE GLU ALA PRO GLU PRO MET SEQRES 70 A 994 THR MET ALA LEU SER VAL LEU VAL THR ILE GLU MET CYS SEQRES 71 A 994 ASN ALA LEU ASN SER LEU SER GLU ASN GLN SER LEU MET SEQRES 72 A 994 ARG MET PRO PRO TRP VAL ASN ILE TRP LEU LEU GLY SER SEQRES 73 A 994 ILE CYS LEU SER MET SER LEU HIS PHE LEU ILE LEU TYR SEQRES 74 A 994 VAL ASP PRO LEU PRO MET ILE PHE LYS LEU LYS ALA LEU SEQRES 75 A 994 ASP LEU THR GLN TRP LEU MET VAL LEU LYS ILE SER LEU SEQRES 76 A 994 PRO VAL ILE GLY LEU ASP GLU ILE LEU LYS PHE ILE ALA SEQRES 77 A 994 ARG ASN TYR LEU GLU GLY HET MG A 995 1 HET MG A 996 1 HET CZA A1001 25 HET ADP A1002 27 HETNAM MG MAGNESIUM ION HETNAM CZA (6AR,11AS,11BR)-10-ACETYL-9-HYDROXY-7,7-DIMETHYL-2,6, HETNAM 2 CZA 6A,7,11A,11B-HEXAHYDRO-11H-PYRROLO[1',2':2, HETNAM 3 CZA 3]ISOINDOLO[4,5,6-CD]INDOL-11-ONE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 CZA C20 H20 N2 O3 FORMUL 5 ADP C10 H15 N5 O10 P2 FORMUL 6 HOH *10(H2 O) HELIX 1 1 ALA A 3 LYS A 7 5 5 HELIX 2 2 SER A 8 GLY A 17 1 10 HELIX 3 3 ASP A 27 GLY A 37 1 11 HELIX 4 4 TRP A 50 PHE A 57 1 8 HELIX 5 5 ASP A 59 SER A 72 1 14 HELIX 6 6 VAL A 89 ILE A 103 1 15 HELIX 7 7 VAL A 104 VAL A 106 5 3 HELIX 8 8 ASN A 114 LEU A 119 1 6 HELIX 9 9 ARG A 143 ILE A 145 5 3 HELIX 10 10 VAL A 200 LYS A 204 5 5 HELIX 11 11 THR A 226 SER A 229 5 4 HELIX 12 12 THR A 230 ALA A 241 1 12 HELIX 13 13 THR A 247 LEU A 253 1 7 HELIX 14 14 LEU A 253 CYS A 268 1 16 HELIX 15 15 ASN A 275 ASP A 281 5 7 HELIX 16 16 SER A 287 ILE A 307 1 21 HELIX 17 17 GLY A 310 ALA A 327 1 18 HELIX 18 18 PRO A 337 LEU A 342 1 6 HELIX 19 19 GLY A 343 THR A 345 5 3 HELIX 20 20 ARG A 403 GLN A 406 5 4 HELIX 21 21 PHE A 407 CYS A 420 1 14 HELIX 22 22 GLU A 439 ASN A 453 1 15 HELIX 23 23 SER A 463 ASN A 469 1 7 HELIX 24 24 ASN A 469 LEU A 478 1 10 HELIX 25 25 VAL A 521 ASP A 523 5 3 HELIX 26 26 THR A 538 GLY A 555 1 18 HELIX 27 27 ASP A 580 SER A 582 5 3 HELIX 28 28 ARG A 583 GLU A 588 1 6 HELIX 29 29 GLU A 606 ALA A 617 1 12 HELIX 30 30 ASN A 628 ILE A 639 1 12 HELIX 31 31 GLY A 655 ASP A 660 1 6 HELIX 32 32 PRO A 662 ALA A 673 1 12 HELIX 33 33 GLU A 680 SER A 693 1 14 HELIX 34 34 GLY A 704 ASN A 706 5 3 HELIX 35 35 ASP A 707 ALA A 714 1 8 HELIX 36 36 THR A 724 SER A 731 1 8 HELIX 37 37 ASN A 739 LEU A 781 1 43 HELIX 38 38 ILE A 788 VAL A 798 1 11 HELIX 39 39 ASP A 800 LEU A 807 1 8 HELIX 40 40 GLY A 808 ASN A 810 5 3 HELIX 41 41 GLY A 831 MET A 838 1 8 HELIX 42 42 MET A 838 TRP A 854 1 17 HELIX 43 43 CYS A 888 GLU A 892 5 5 HELIX 44 44 ALA A 893 ASN A 914 1 22 HELIX 45 45 ASN A 930 PHE A 945 1 16 HELIX 46 46 PHE A 945 VAL A 950 1 6 HELIX 47 47 ASP A 951 PHE A 957 1 7 HELIX 48 48 TRP A 967 SER A 974 1 8 HELIX 49 49 PRO A 976 ARG A 989 1 14 SHEET 1 A 6 ARG A 139 LYS A 141 0 SHEET 2 A 6 MET A 126 VAL A 129 -1 N GLY A 127 O ILE A 140 SHEET 3 A 6 ILE A 150 ALA A 154 -1 O GLU A 152 N LYS A 128 SHEET 4 A 6 LYS A 218 THR A 225 -1 O GLY A 221 N VAL A 151 SHEET 5 A 6 ASP A 162 ILE A 168 -1 N ASP A 162 O ALA A 224 SHEET 6 A 6 MET A 207 LEU A 208 -1 O LEU A 208 N ILE A 163 SHEET 1 B 3 VAL A 187 ILE A 188 0 SHEET 2 B 3 ARG A 174 ASP A 176 -1 N VAL A 175 O VAL A 187 SHEET 3 B 3 ASN A 213 ALA A 216 -1 O ALA A 215 N ARG A 174 SHEET 1 C 8 ALA A 331 VAL A 333 0 SHEET 2 C 8 MET A 733 LEU A 735 -1 O VAL A 734 N ILE A 332 SHEET 3 C 8 ILE A 716 MET A 720 1 N ALA A 719 O MET A 733 SHEET 4 C 8 THR A 698 THR A 701 1 N THR A 698 O ILE A 716 SHEET 5 C 8 VAL A 347 ASP A 351 1 N VAL A 347 O ALA A 699 SHEET 6 C 8 ARG A 620 THR A 625 1 O ILE A 622 N ILE A 348 SHEET 7 C 8 CYS A 675 ALA A 677 1 O PHE A 676 N MET A 623 SHEET 8 C 8 ALA A 652 THR A 654 1 N TYR A 653 O ALA A 677 SHEET 1 D 9 LYS A 400 PRO A 401 0 SHEET 2 D 9 VAL A 395 LYS A 397 -1 N LYS A 397 O LYS A 400 SHEET 3 D 9 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 D 9 SER A 362 ASP A 373 -1 N ILE A 368 O ASN A 380 SHEET 5 D 9 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 6 D 9 ARG A 560 ARG A 567 -1 N ARG A 560 O MET A 599 SHEET 7 D 9 LYS A 511 GLY A 516 -1 N VAL A 514 O ALA A 565 SHEET 8 D 9 SER A 495 PRO A 500 -1 N CYS A 498 O LYS A 511 SHEET 9 D 9 MET A 479 LEU A 485 -1 N LYS A 480 O SER A 499 SHEET 1 E 7 LYS A 400 PRO A 401 0 SHEET 2 E 7 VAL A 395 LYS A 397 -1 N LYS A 397 O LYS A 400 SHEET 3 E 7 PHE A 376 ILE A 384 -1 N SER A 383 O LEU A 396 SHEET 4 E 7 SER A 362 ASP A 373 -1 N ILE A 368 O ASN A 380 SHEET 5 E 7 LEU A 591 LEU A 600 -1 O GLY A 598 N LYS A 365 SHEET 6 E 7 CYS A 525 VAL A 528 1 N TYR A 527 O PHE A 593 SHEET 7 E 7 VAL A 535 PRO A 536 -1 O VAL A 535 N VAL A 528 SHEET 1 F 2 SER A 424 PHE A 427 0 SHEET 2 F 2 TYR A 434 VAL A 437 -1 O GLU A 435 N ASP A 426 SSBOND 1 CYS A 876 CYS A 888 1555 1555 2.21 LINK OE1 GLN A 56 MG MG A 996 1555 1555 2.03 LINK MG MG A 995 O3B ADP A1002 1555 1555 2.16 LINK MG MG A 995 O2B ADP A1002 1555 1555 2.53 LINK MG MG A 995 O1B ADP A1002 1555 1555 2.91 LINK MG MG A 996 O1 CZA A1001 1555 1555 2.51 SITE 1 AC1 1 ADP A1002 SITE 1 AC2 2 GLN A 56 CZA A1001 SITE 1 AC3 9 GLN A 56 VAL A 62 LEU A 65 LEU A 98 SITE 2 AC3 9 ASN A 101 ALA A 102 GLU A 309 LEU A 311 SITE 3 AC3 9 MG A 996 SITE 1 AC4 7 THR A 353 ARG A 489 LYS A 492 GLY A 626 SITE 2 AC4 7 ARG A 678 VAL A 679 MG A 995 CRYST1 62.340 96.500 155.130 90.00 94.84 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016041 0.000000 0.001358 0.00000 SCALE2 0.000000 0.010363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006469 0.00000