HEADER TRANSFERASE 08-JAN-09 3FR3 TITLE TETRAMERIZATION AND COOPERATIVITY IN PLASMODIUM FALCIPARUM GLUTATHIONE TITLE 2 TRANSFERASE ARE MEDIATED BY THE ATYPIC LOOP 113-118 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PFGST; COMPND 5 EC: 2.5.1.18; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PJC20 KEYWDS PLASMODIUM FALCIPARUM, PFGST, OXIDATIVE STRESS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.PERBANDT,E.LIEBAU,G.RICCI REVDAT 2 01-NOV-23 3FR3 1 REMARK SEQADV REVDAT 1 26-JAN-10 3FR3 0 JRNL AUTH M.PERBANDT,E.LIEBAU,G.RICCI JRNL TITL TETRAMERIZATION AND COOPERATIVITY IN PLASMODIUM FALCIPARUM JRNL TITL 2 GLUTATHIONE TRANSFERASE ARE MEDIATED BY THE ATYPIC LOOP JRNL TITL 3 113-118 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 29646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1591 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2111 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.72000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.171 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.943 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3456 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4673 ; 1.941 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 9.769 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;37.706 ;24.972 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 573 ;17.757 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.174 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.166 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2686 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1775 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2370 ; 0.321 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 207 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 103 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.201 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2051 ; 1.222 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3214 ; 1.957 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1606 ; 2.878 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1456 ; 4.063 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FR3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29646 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1Q4J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.44500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.53100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.44500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.53100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 205 REMARK 465 SER A 206 REMARK 465 VAL A 207 REMARK 465 TYR A 208 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ASP B 3 REMARK 465 ASN B 144 REMARK 465 ASN B 145 REMARK 465 ASP B 146 REMARK 465 GLU B 205 REMARK 465 SER B 206 REMARK 465 VAL B 207 REMARK 465 TYR B 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 GLU A 51 CB CG CD OE1 OE2 REMARK 470 LYS A 147 CB CG CD CE NZ REMARK 470 ASN A 153 CB CG OD1 ND2 REMARK 470 GLU B 29 CB CG CD OE1 OE2 REMARK 470 GLU B 51 CB CG CD OE1 OE2 REMARK 470 ASP B 66 CB CG OD1 OD2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 THR B 141 CB OG1 CG2 REMARK 470 ASN B 142 CB CG OD1 ND2 REMARK 470 LYS B 147 CA CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 117 O HOH B 266 2.14 REMARK 500 O LYS A 204 O HOH A 331 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR B 108 OH TYR B 108 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU A 79 CB - CG - CD2 ANGL. DEV. = 11.1 DEGREES REMARK 500 LYS A 147 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 LEU B 62 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 -81.71 -81.34 REMARK 500 ASN A 38 -51.65 -124.47 REMARK 500 GLN A 71 97.38 83.42 REMARK 500 THR A 113 153.12 84.03 REMARK 500 ALA A 114 10.16 80.85 REMARK 500 ASN A 116 54.99 -93.23 REMARK 500 ASN A 139 43.78 -104.24 REMARK 500 THR A 141 95.05 65.92 REMARK 500 ASN A 142 106.71 68.58 REMARK 500 ASN A 143 175.45 179.67 REMARK 500 ASN A 144 -49.25 151.54 REMARK 500 ASN A 145 -29.66 139.95 REMARK 500 ASP A 146 74.48 173.33 REMARK 500 LYS A 147 81.84 64.19 REMARK 500 ARG B 13 -75.53 -78.62 REMARK 500 ASN B 38 -46.70 140.42 REMARK 500 ALA B 41 -42.10 -153.58 REMARK 500 PHE B 42 -78.43 176.60 REMARK 500 VAL B 43 97.44 39.39 REMARK 500 GLU B 44 -56.19 107.35 REMARK 500 GLN B 71 99.87 75.43 REMARK 500 ASN B 116 56.00 31.10 REMARK 500 GLU B 123 -68.65 -123.83 REMARK 500 HIS B 140 149.43 99.11 REMARK 500 THR B 141 79.81 -67.45 REMARK 500 ASN B 142 116.66 69.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 112 THR A 113 148.25 REMARK 500 ALA A 114 ALA A 115 144.57 REMARK 500 HIS A 140 THR A 141 40.55 REMARK 500 ASN A 143 ASN A 144 142.25 REMARK 500 ASP A 146 LYS A 147 38.18 REMARK 500 LYS A 147 TYR A 148 108.44 REMARK 500 ARG A 203 LYS A 204 146.41 REMARK 500 ALA B 115 ASN B 116 -144.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDS A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDS B 401 DBREF 3FR3 A 1 208 UNP Q8MU52 GST_PLAFA 1 211 DBREF 3FR3 B 1 208 UNP Q8MU52 GST_PLAFA 1 211 SEQADV 3FR3 A UNP Q8MU52 ASN 114 DELETION SEQADV 3FR3 A UNP Q8MU52 LEU 115 DELETION SEQADV 3FR3 A UNP Q8MU52 PHE 116 DELETION SEQADV 3FR3 A UNP Q8MU52 LYS 117 DELETION SEQADV 3FR3 A UNP Q8MU52 GLN 118 DELETION SEQADV 3FR3 ALA A 114 UNP Q8MU52 INSERTION SEQADV 3FR3 ALA A 115 UNP Q8MU52 INSERTION SEQADV 3FR3 B UNP Q8MU52 ASN 114 DELETION SEQADV 3FR3 B UNP Q8MU52 LEU 115 DELETION SEQADV 3FR3 B UNP Q8MU52 PHE 116 DELETION SEQADV 3FR3 B UNP Q8MU52 LYS 117 DELETION SEQADV 3FR3 B UNP Q8MU52 GLN 118 DELETION SEQADV 3FR3 ALA B 114 UNP Q8MU52 INSERTION SEQADV 3FR3 ALA B 115 UNP Q8MU52 INSERTION SEQRES 1 A 208 MET GLY ASP ASN ILE VAL LEU TYR TYR PHE ASP ALA ARG SEQRES 2 A 208 GLY LYS ALA GLU LEU ILE ARG LEU ILE PHE ALA TYR LEU SEQRES 3 A 208 GLY ILE GLU TYR THR ASP LYS ARG PHE GLY VAL ASN GLY SEQRES 4 A 208 ASP ALA PHE VAL GLU PHE LYS ASN PHE LYS LYS GLU LYS SEQRES 5 A 208 ASP THR PRO PHE GLU GLN VAL PRO ILE LEU GLN ILE GLY SEQRES 6 A 208 ASP LEU ILE LEU ALA GLN SER GLN ALA ILE VAL ARG TYR SEQRES 7 A 208 LEU SER LYS LYS TYR ASN ILE CYS GLY GLU SER GLU LEU SEQRES 8 A 208 ASN GLU PHE TYR ALA ASP MET ILE PHE CYS GLY VAL GLN SEQRES 9 A 208 ASP ILE HIS TYR LYS PHE ASN ASN THR ALA ALA ASN GLU SEQRES 10 A 208 THR THR PHE LEU ASN GLU ASP LEU PRO LYS TRP SER GLY SEQRES 11 A 208 TYR PHE GLU LYS LEU LEU LYS LYS ASN HIS THR ASN ASN SEQRES 12 A 208 ASN ASN ASP LYS TYR TYR PHE VAL GLY ASN ASN LEU THR SEQRES 13 A 208 TYR ALA ASP LEU ALA VAL PHE ASN LEU TYR ASP ASP ILE SEQRES 14 A 208 GLU THR LYS TYR PRO SER SER LEU LYS ASN PHE PRO LEU SEQRES 15 A 208 LEU LYS ALA HIS ASN GLU PHE ILE SER ASN LEU PRO ASN SEQRES 16 A 208 ILE LYS ASN TYR ILE THR ASN ARG LYS GLU SER VAL TYR SEQRES 1 B 208 MET GLY ASP ASN ILE VAL LEU TYR TYR PHE ASP ALA ARG SEQRES 2 B 208 GLY LYS ALA GLU LEU ILE ARG LEU ILE PHE ALA TYR LEU SEQRES 3 B 208 GLY ILE GLU TYR THR ASP LYS ARG PHE GLY VAL ASN GLY SEQRES 4 B 208 ASP ALA PHE VAL GLU PHE LYS ASN PHE LYS LYS GLU LYS SEQRES 5 B 208 ASP THR PRO PHE GLU GLN VAL PRO ILE LEU GLN ILE GLY SEQRES 6 B 208 ASP LEU ILE LEU ALA GLN SER GLN ALA ILE VAL ARG TYR SEQRES 7 B 208 LEU SER LYS LYS TYR ASN ILE CYS GLY GLU SER GLU LEU SEQRES 8 B 208 ASN GLU PHE TYR ALA ASP MET ILE PHE CYS GLY VAL GLN SEQRES 9 B 208 ASP ILE HIS TYR LYS PHE ASN ASN THR ALA ALA ASN GLU SEQRES 10 B 208 THR THR PHE LEU ASN GLU ASP LEU PRO LYS TRP SER GLY SEQRES 11 B 208 TYR PHE GLU LYS LEU LEU LYS LYS ASN HIS THR ASN ASN SEQRES 12 B 208 ASN ASN ASP LYS TYR TYR PHE VAL GLY ASN ASN LEU THR SEQRES 13 B 208 TYR ALA ASP LEU ALA VAL PHE ASN LEU TYR ASP ASP ILE SEQRES 14 B 208 GLU THR LYS TYR PRO SER SER LEU LYS ASN PHE PRO LEU SEQRES 15 B 208 LEU LYS ALA HIS ASN GLU PHE ILE SER ASN LEU PRO ASN SEQRES 16 B 208 ILE LYS ASN TYR ILE THR ASN ARG LYS GLU SER VAL TYR HET GDS A 400 40 HET GDS B 401 40 HETNAM GDS OXIDIZED GLUTATHIONE DISULFIDE FORMUL 3 GDS 2(C20 H32 N6 O12 S2) FORMUL 5 HOH *212(H2 O) HELIX 1 1 ARG A 13 LYS A 15 5 3 HELIX 2 2 ALA A 16 GLY A 27 1 12 HELIX 3 3 ASP A 40 LYS A 52 1 13 HELIX 4 4 GLN A 71 TYR A 83 1 13 HELIX 5 5 SER A 89 ASN A 112 1 24 HELIX 6 6 ASN A 116 GLU A 123 1 8 HELIX 7 7 GLU A 123 ASN A 139 1 17 HELIX 8 8 THR A 156 TYR A 173 1 18 HELIX 9 9 PHE A 180 LEU A 193 1 14 HELIX 10 10 LEU A 193 ARG A 203 1 11 HELIX 11 11 ARG B 13 LYS B 15 5 3 HELIX 12 12 ALA B 16 GLY B 27 1 12 HELIX 13 13 GLU B 44 LYS B 52 1 9 HELIX 14 14 GLN B 71 TYR B 83 1 13 HELIX 15 15 SER B 89 ASN B 112 1 24 HELIX 16 16 GLU B 117 GLU B 123 1 7 HELIX 17 17 GLU B 123 ASN B 139 1 17 HELIX 18 18 THR B 156 TYR B 173 1 18 HELIX 19 19 PHE B 180 LEU B 193 1 14 HELIX 20 20 LEU B 193 ARG B 203 1 11 SHEET 1 A 4 THR A 31 PHE A 35 0 SHEET 2 A 4 ILE A 5 PHE A 10 1 N TYR A 9 O PHE A 35 SHEET 3 A 4 ILE A 61 ILE A 64 -1 O ILE A 61 N TYR A 8 SHEET 4 A 4 LEU A 67 ALA A 70 -1 O LEU A 69 N LEU A 62 SHEET 1 B 4 THR B 31 PHE B 35 0 SHEET 2 B 4 ILE B 5 PHE B 10 1 N ILE B 5 O THR B 31 SHEET 3 B 4 ILE B 61 ILE B 64 -1 O ILE B 61 N TYR B 8 SHEET 4 B 4 LEU B 67 ALA B 70 -1 O LEU B 67 N ILE B 64 CISPEP 1 VAL A 59 PRO A 60 0 4.03 CISPEP 2 THR A 113 ALA A 114 0 -5.85 CISPEP 3 ASN A 144 ASN A 145 0 -25.29 CISPEP 4 ASN A 145 ASP A 146 0 3.99 CISPEP 5 VAL B 37 ASN B 38 0 -18.03 CISPEP 6 ASN B 38 GLY B 39 0 10.95 CISPEP 7 GLY B 39 ASP B 40 0 15.37 CISPEP 8 ASP B 40 ALA B 41 0 -5.27 CISPEP 9 ALA B 41 PHE B 42 0 -23.17 CISPEP 10 PHE B 42 VAL B 43 0 9.37 CISPEP 11 VAL B 59 PRO B 60 0 3.84 CISPEP 12 ALA B 114 ALA B 115 0 -15.15 SITE 1 AC1 26 TYR A 9 PHE A 10 ALA A 12 ARG A 13 SITE 2 AC1 26 GLY A 14 LYS A 15 PHE A 45 GLN A 58 SITE 3 AC1 26 VAL A 59 PRO A 60 GLN A 71 SER A 72 SITE 4 AC1 26 ASP A 105 HOH A 211 HOH A 228 HOH A 271 SITE 5 AC1 26 HOH A 285 HOH A 304 HOH A 315 ALA B 115 SITE 6 AC1 26 ASN B 116 GLU B 117 THR B 118 LYS B 172 SITE 7 AC1 26 HOH B 257 HOH B 266 SITE 1 AC2 17 ALA A 115 GLU A 117 THR A 118 HOH A 338 SITE 2 AC2 17 TYR B 9 PHE B 10 ALA B 12 ARG B 13 SITE 3 AC2 17 GLY B 14 GLN B 58 VAL B 59 PRO B 60 SITE 4 AC2 17 GLN B 71 SER B 72 ASP B 105 HOH B 222 SITE 5 AC2 17 HOH B 237 CRYST1 60.890 87.062 74.823 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013365 0.00000