HEADER DNA BINDING PROTEIN 08-JAN-09 3FRQ TITLE STRUCTURE OF THE MACROLIDE BIOSENSOR PROTEIN, MPHR(A), WITH TITLE 2 ERYTHROMCYIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPRESSOR PROTEIN MPHR(A); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MPHR(A); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS MACROLIDE ANTIBIOTIC. REPRESSOR, BIOSENSOR, ERYTHROMYCIN, KEYWDS 2 STRPTOMYCES, NATURAL PRODUCTS, BIOSYNTHESIS, DNA-BINDING, KEYWDS 3 TRANSCRIPTION, TRANSCRIPTION REGULATION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.ZHENG,V.SAGAR,A.SMOLINSKY,C.BOURKE,N.LARONDE-LEBLANC,T.A.CROPP REVDAT 4 21-FEB-24 3FRQ 1 REMARK REVDAT 3 13-JUL-11 3FRQ 1 VERSN REVDAT 2 21-APR-09 3FRQ 1 JRNL REVDAT 1 24-MAR-09 3FRQ 0 JRNL AUTH J.ZHENG,V.SAGAR,A.SMOLINSKY,C.BOURKE,N.LARONDE-LEBLANC, JRNL AUTH 2 T.A.CROPP JRNL TITL STRUCTURE AND FUNCTION OF THE MACROLIDE BIOSENSOR PROTEIN, JRNL TITL 2 MPHR(A), WITH AND WITHOUT ERYTHROMYCIN JRNL REF J.MOL.BIOL. V. 387 1250 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19265703 JRNL DOI 10.1016/J.JMB.2009.02.058 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 35192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1844 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 140 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.350 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3139 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4290 ; 1.554 ; 2.017 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 4.939 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;27.395 ;22.932 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 520 ;13.162 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;20.049 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2287 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1625 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2244 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 190 ; 0.141 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1939 ; 1.085 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3038 ; 1.565 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1335 ; 2.556 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1242 ; 3.875 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7660 6.7565 22.4942 REMARK 3 T TENSOR REMARK 3 T11: -0.0508 T22: -0.0106 REMARK 3 T33: -0.0516 T12: 0.0081 REMARK 3 T13: 0.0037 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.9751 L22: 0.8702 REMARK 3 L33: 0.6601 L12: -0.3007 REMARK 3 L13: 0.3088 L23: 0.0546 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.0569 S13: 0.0461 REMARK 3 S21: 0.0090 S22: 0.0160 S23: -0.0705 REMARK 3 S31: 0.0174 S32: 0.1095 S33: -0.0051 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 189 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9243 7.3702 8.6324 REMARK 3 T TENSOR REMARK 3 T11: -0.0235 T22: -0.0350 REMARK 3 T33: -0.0234 T12: -0.0232 REMARK 3 T13: -0.0420 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.9013 L22: 1.4692 REMARK 3 L33: 1.1357 L12: -0.0328 REMARK 3 L13: 0.1823 L23: 0.7172 REMARK 3 S TENSOR REMARK 3 S11: -0.1176 S12: 0.0507 S13: 0.0097 REMARK 3 S21: -0.2060 S22: 0.0365 S23: 0.2549 REMARK 3 S31: -0.0770 S32: -0.1180 S33: 0.0811 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FRQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000050960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : KONZU HLD8-24 FILTER REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35192 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 67.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35-40% (W/V) PEG 3350, 0.2M MGCL2, REMARK 280 0.1M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K. 35-40% (W/V) PEG 3350, 0.2M MGCL2, 0.1M BIS- REMARK 280 TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.14700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.32100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.60050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.32100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.14700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.60050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ARG A 3 REMARK 465 PRO A 4 REMARK 465 LEU A 190 REMARK 465 GLN A 191 REMARK 465 ALA A 192 REMARK 465 HIS A 193 REMARK 465 ALA A 194 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 190 REMARK 465 GLN B 191 REMARK 465 ALA B 192 REMARK 465 HIS B 193 REMARK 465 ALA B 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 185 CG OD1 OD2 REMARK 470 GLN A 188 CG CD OE1 NE2 REMARK 470 LEU A 189 CG CD1 CD2 REMARK 470 LEU B 6 CG CD1 CD2 REMARK 470 ASP B 185 CG OD1 OD2 REMARK 470 ASP B 186 CG OD1 OD2 REMARK 470 GLN B 188 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 22 CA CB CG CD NE CZ NH1 REMARK 480 ARG A 22 NH2 REMARK 480 LEU A 145 CA CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 155 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 49 -71.84 71.74 REMARK 500 ASN A 97 -164.03 -121.03 REMARK 500 LYS B 7 -67.85 -96.69 REMARK 500 THR B 49 -58.49 71.05 REMARK 500 ASN B 97 -97.55 -108.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ERY A 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ERY B 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 197 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 198 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 200 DBREF 3FRQ A 1 194 UNP Q9EVJ6 Q9EVJ6_ECOLX 1 194 DBREF 3FRQ B 1 194 UNP Q9EVJ6 Q9EVJ6_ECOLX 1 194 SEQADV 3FRQ GLY A 0 UNP Q9EVJ6 EXPRESSION TAG SEQADV 3FRQ GLY B 0 UNP Q9EVJ6 EXPRESSION TAG SEQRES 1 A 195 GLY MET PRO ARG PRO LYS LEU LYS SER ASP ASP GLU VAL SEQRES 2 A 195 LEU GLU ALA ALA THR VAL VAL LEU LYS ARG CYS GLY PRO SEQRES 3 A 195 ILE GLU PHE THR LEU SER GLY VAL ALA LYS GLU VAL GLY SEQRES 4 A 195 LEU SER ARG ALA ALA LEU ILE GLN ARG PHE THR ASN ARG SEQRES 5 A 195 ASP THR LEU LEU VAL ARG MET MET GLU ARG GLY VAL GLU SEQRES 6 A 195 GLN VAL ARG HIS TYR LEU ASN ALA ILE PRO ILE GLY ALA SEQRES 7 A 195 GLY PRO GLN GLY LEU TRP GLU PHE LEU GLN VAL LEU VAL SEQRES 8 A 195 ARG SER MET ASN THR ARG ASN ASP PHE SER VAL ASN TYR SEQRES 9 A 195 LEU ILE SER TRP TYR GLU LEU GLN VAL PRO GLU LEU ARG SEQRES 10 A 195 THR LEU ALA ILE GLN ARG ASN ARG ALA VAL VAL GLU GLY SEQRES 11 A 195 ILE ARG LYS ARG LEU PRO PRO GLY ALA PRO ALA ALA ALA SEQRES 12 A 195 GLU LEU LEU LEU HIS SER VAL ILE ALA GLY ALA THR MET SEQRES 13 A 195 GLN TRP ALA VAL ASP PRO ASP GLY GLU LEU ALA ASP HIS SEQRES 14 A 195 VAL LEU ALA GLN ILE ALA ALA ILE LEU CYS LEU MET PHE SEQRES 15 A 195 PRO GLU HIS ASP ASP PHE GLN LEU LEU GLN ALA HIS ALA SEQRES 1 B 195 GLY MET PRO ARG PRO LYS LEU LYS SER ASP ASP GLU VAL SEQRES 2 B 195 LEU GLU ALA ALA THR VAL VAL LEU LYS ARG CYS GLY PRO SEQRES 3 B 195 ILE GLU PHE THR LEU SER GLY VAL ALA LYS GLU VAL GLY SEQRES 4 B 195 LEU SER ARG ALA ALA LEU ILE GLN ARG PHE THR ASN ARG SEQRES 5 B 195 ASP THR LEU LEU VAL ARG MET MET GLU ARG GLY VAL GLU SEQRES 6 B 195 GLN VAL ARG HIS TYR LEU ASN ALA ILE PRO ILE GLY ALA SEQRES 7 B 195 GLY PRO GLN GLY LEU TRP GLU PHE LEU GLN VAL LEU VAL SEQRES 8 B 195 ARG SER MET ASN THR ARG ASN ASP PHE SER VAL ASN TYR SEQRES 9 B 195 LEU ILE SER TRP TYR GLU LEU GLN VAL PRO GLU LEU ARG SEQRES 10 B 195 THR LEU ALA ILE GLN ARG ASN ARG ALA VAL VAL GLU GLY SEQRES 11 B 195 ILE ARG LYS ARG LEU PRO PRO GLY ALA PRO ALA ALA ALA SEQRES 12 B 195 GLU LEU LEU LEU HIS SER VAL ILE ALA GLY ALA THR MET SEQRES 13 B 195 GLN TRP ALA VAL ASP PRO ASP GLY GLU LEU ALA ASP HIS SEQRES 14 B 195 VAL LEU ALA GLN ILE ALA ALA ILE LEU CYS LEU MET PHE SEQRES 15 B 195 PRO GLU HIS ASP ASP PHE GLN LEU LEU GLN ALA HIS ALA HET ERY A 195 51 HET GOL A 196 6 HET GOL A 197 6 HET CL A 198 1 HET ERY B 195 51 HET GOL B 196 6 HET GOL B 197 6 HET GOL B 198 6 HET GOL B 199 6 HET CL B 200 1 HETNAM ERY ERYTHROMYCIN A HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ERY 2(C37 H67 N O13) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 6 CL 2(CL 1-) FORMUL 13 HOH *235(H2 O) HELIX 1 1 SER A 8 PHE A 28 1 21 HELIX 2 2 THR A 29 GLY A 38 1 10 HELIX 3 3 SER A 40 THR A 49 1 10 HELIX 4 4 ASN A 50 ILE A 73 1 24 HELIX 5 5 ALA A 77 SER A 92 1 16 HELIX 6 6 SER A 100 VAL A 112 1 13 HELIX 7 7 VAL A 112 LYS A 132 1 21 HELIX 8 8 ALA A 141 ASP A 160 1 20 HELIX 9 9 GLU A 164 PHE A 181 1 18 HELIX 10 10 SER B 8 PHE B 28 1 21 HELIX 11 11 THR B 29 GLY B 38 1 10 HELIX 12 12 SER B 40 THR B 49 1 10 HELIX 13 13 ASN B 50 ILE B 73 1 24 HELIX 14 14 ALA B 77 SER B 92 1 16 HELIX 15 15 SER B 100 VAL B 112 1 13 HELIX 16 16 VAL B 112 ARG B 133 1 22 HELIX 17 17 ALA B 141 ASP B 160 1 20 HELIX 18 18 GLU B 164 PHE B 181 1 18 SITE 1 AC1 20 THR A 17 VAL A 66 TYR A 69 LEU A 89 SITE 2 AC1 20 SER A 92 ASN A 102 TYR A 103 SER A 106 SITE 3 AC1 20 ARG A 122 ASN A 123 HIS A 147 ALA A 151 SITE 4 AC1 20 CL A 198 HOH A 199 HOH A 209 HOH A 227 SITE 5 AC1 20 HOH A 232 HOH A 235 HOH A 287 MET B 155 SITE 1 AC2 7 LYS A 5 LEU A 6 GLY A 76 LYS A 132 SITE 2 AC2 7 LEU A 134 PRO A 135 HOH A 248 SITE 1 AC3 6 ASP A 160 HIS A 168 HOH A 332 VAL B 127 SITE 2 AC3 6 LEU B 144 HOH B 220 SITE 1 AC4 3 ASN A 94 ERY A 195 HOH A 224 SITE 1 AC5 18 MET A 155 LYS B 21 GLY B 62 VAL B 66 SITE 2 AC5 18 SER B 92 ASN B 102 TYR B 103 SER B 106 SITE 3 AC5 18 ARG B 122 ASN B 123 HIS B 147 ALA B 151 SITE 4 AC5 18 CL B 200 HOH B 208 HOH B 238 HOH B 276 SITE 5 AC5 18 HOH B 335 HOH B 360 SITE 1 AC6 5 ILE A 26 ARG A 51 SER B 40 ALA B 42 SITE 2 AC6 5 GLN B 46 SITE 1 AC7 4 ARG B 131 LYS B 132 LEU B 134 HOH B 312 SITE 1 AC8 7 ASN A 123 ARG A 124 ASP B 160 HIS B 168 SITE 2 AC8 7 HOH B 203 HOH B 333 HOH B 379 SITE 1 AC9 2 TYR B 108 HOH B 211 SITE 1 BC1 3 ASN B 94 ERY B 195 HOH B 309 CRYST1 44.294 61.201 134.642 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022576 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007427 0.00000