data_3FTM # _entry.id 3FTM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FTM pdb_00003ftm 10.2210/pdb3ftm/pdb NDB AR0102 ? ? RCSB RCSB051026 ? ? WWPDB D_1000051026 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-02-24 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_validate_polymer_linkage 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_conn_type 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.conn_type_id' 4 3 'Structure model' '_struct_conn.id' 5 3 'Structure model' '_struct_conn.pdbx_dist_value' 6 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 8 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 15 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 16 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 17 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 18 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 19 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 20 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 21 3 'Structure model' '_struct_conn_type.id' 22 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 23 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 24 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3FTM _pdbx_database_status.recvd_initial_deposition_date 2009-01-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3fs0 _pdbx_database_related.details 'higher resolution crystal form of similar class II product-template duplex' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pitt, J.N.' 1 ;Ferre-D'Amare, A.R. ; 2 # _citation.id primary _citation.title 'Structure-guided engineering of the regioselectivity of RNA ligase ribozymes.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 131 _citation.page_first 3532 _citation.page_last 3540 _citation.year 2009 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19220054 _citation.pdbx_database_id_DOI 10.1021/ja8067325 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pitt, J.N.' 1 ? primary ;Ferre-D'Amare, A.R. ; 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*UP*GP*UP*GP*AP*GP*GP*CP*UP*G)-3'" 3579.162 2 ? ? ? 'Template stand of the class II ligase a4-11' 2 polymer syn "5'-R(*CP*CP*AP*GP*UP*CP*GP*GP*AP*AP*CP*A)-3'" 3834.376 2 ? ? ? ;Product strand of the class II ligase a4-11, single stranded RNA with one 2'-5' linkage ; 3 non-polymer syn 'MAGNESIUM ION' 24.305 9 ? ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 2 ? ? ? ? 5 water nat water 18.015 6 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GUGUGAGGCUG GUGUGAGGCUG A,C ? 2 polyribonucleotide no no CCAGUCGGAACA CCAGUCGGAACA B,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'POTASSIUM ION' K 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 G n 1 4 U n 1 5 G n 1 6 A n 1 7 G n 1 8 G n 1 9 C n 1 10 U n 1 11 G n 2 1 C n 2 2 C n 2 3 A n 2 4 G n 2 5 U n 2 6 C n 2 7 G n 2 8 G n 2 9 A n 2 10 A n 2 11 C n 2 12 A n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 43 43 G GUA A . n A 1 2 U 2 44 44 U URI A . n A 1 3 G 3 45 45 G GUA A . n A 1 4 U 4 46 46 U URI A . n A 1 5 G 5 47 47 G GUA A . n A 1 6 A 6 48 48 A ADE A . n A 1 7 G 7 49 49 G GUA A . n A 1 8 G 8 50 50 G GUA A . n A 1 9 C 9 51 51 C CYT A . n A 1 10 U 10 52 52 U URI A . n A 1 11 G 11 53 53 G GUA A . n B 2 1 C 1 -6 -6 C CYT B . n B 2 2 C 2 -5 -5 C CYT B . n B 2 3 A 3 -4 -4 A ADE B . n B 2 4 G 4 -3 -3 G GUA B . n B 2 5 U 5 -2 -2 U URI B . n B 2 6 C 6 -1 -1 C C2Y B . n B 2 7 G 7 1 1 G G2U B . n B 2 8 G 8 2 2 G GUA B . n B 2 9 A 9 3 3 A ADE B . n B 2 10 A 10 4 4 A ADE B . n B 2 11 C 11 5 5 C CYT B . n B 2 12 A 12 6 6 A ADE B . n C 1 1 G 1 43 43 G GUA C . n C 1 2 U 2 44 44 U URI C . n C 1 3 G 3 45 45 G GUA C . n C 1 4 U 4 46 46 U URI C . n C 1 5 G 5 47 47 G GUA C . n C 1 6 A 6 48 48 A ADE C . n C 1 7 G 7 49 49 G GUA C . n C 1 8 G 8 50 50 G GUA C . n C 1 9 C 9 51 51 C CYT C . n C 1 10 U 10 52 52 U URI C . n C 1 11 G 11 53 53 G GUA C . n D 2 1 C 1 -6 -6 C CYT D . n D 2 2 C 2 -5 -5 C CYT D . n D 2 3 A 3 -4 -4 A ADE D . n D 2 4 G 4 -3 -3 G GUA D . n D 2 5 U 5 -2 -2 U URI D . n D 2 6 C 6 -1 -1 C C2Y D . n D 2 7 G 7 1 1 G G2U D . n D 2 8 G 8 2 2 G GUA D . n D 2 9 A 9 3 3 A ADE D . n D 2 10 A 10 4 4 A ADE D . n D 2 11 C 11 5 5 C CYT D . n D 2 12 A 12 6 6 A ADE D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG 1 204 204 MG MG A . F 3 MG 1 306 306 MG MG A . G 3 MG 1 201 201 MG MG B . H 3 MG 1 203 203 MG MG B . I 3 MG 1 308 308 MG MG B . J 3 MG 1 312 312 MG MG B . K 3 MG 1 205 205 MG MG C . L 3 MG 1 316 316 MG MG C . M 3 MG 1 322 322 MG MG C . N 4 K 1 202 202 K K D . O 4 K 1 319 319 K K D . P 5 HOH 1 309 309 HOH HOH A . P 5 HOH 2 310 310 HOH HOH A . P 5 HOH 3 313 313 HOH HOH A . Q 5 HOH 1 314 314 HOH HOH B . Q 5 HOH 2 315 315 HOH HOH B . R 5 HOH 1 302 302 HOH HOH D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 CNS phasing . ? 5 # _cell.entry_id 3FTM _cell.length_a 31.550 _cell.length_b 31.550 _cell.length_c 171.066 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3FTM _symmetry.space_group_name_H-M 'P 41' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3FTM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_percent_sol 57.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;0.2 mM RNA duplex, 10mM magnesium chloride, 200mM magnesium acetate, 15% PEG 8000, 50mM cacodylate pH 6.5 , VAPOR DIFFUSION, HANGING DROP, temperature 295K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'magnesium chloride' ? ? ? 1 2 1 'magnesium acetate' ? ? ? 1 3 1 'PEG 8000' ? ? ? 1 4 1 cacodylate ? ? ? 1 5 2 'magnesium chloride' ? ? ? 1 6 2 'magnesium acetate' ? ? ? 1 7 2 'PEG 8000' ? ? ? 1 8 2 cacodylate ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2005-05-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00000 # _reflns.entry_id 3FTM _reflns.observed_criterion_sigma_I 4 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.7 _reflns.number_obs 4565 _reflns.number_all ? _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rsym_value 0.046 _reflns.pdbx_netI_over_sigmaI 29.4 _reflns.B_iso_Wilson_estimate 92.9 _reflns.pdbx_redundancy 3.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.7 _reflns_shell.d_res_low 2.8 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.442 _reflns_shell.pdbx_Rsym_value 0.442 _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 458 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3FTM _refine.ls_number_reflns_obs 4423 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 141151.41 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.60 _refine.ls_d_res_high 2.70 _refine.ls_percent_reflns_obs 96.5 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.268 _refine.ls_R_factor_R_free_error 0.012 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.6 _refine.ls_number_reflns_R_free 467 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 44.6 _refine.aniso_B[1][1] 2.81 _refine.aniso_B[2][2] 2.81 _refine.aniso_B[3][3] -5.61 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.3 _refine.solvent_model_param_bsol 25 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3FTM _refine_analyze.Luzzati_coordinate_error_obs 0.41 _refine_analyze.Luzzati_sigma_a_obs 0.56 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.46 _refine_analyze.Luzzati_sigma_a_free 0.63 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 982 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 999 _refine_hist.d_res_high 2.70 _refine_hist.d_res_low 29.60 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 14.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.60 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.70 _refine_ls_shell.d_res_low 2.87 _refine_ls_shell.number_reflns_R_work 623 _refine_ls_shell.R_factor_R_work 0.436 _refine_ls_shell.percent_reflns_obs 91.0 _refine_ls_shell.R_factor_R_free 0.444 _refine_ls_shell.R_factor_R_free_error 0.051 _refine_ls_shell.percent_reflns_R_free 10.7 _refine_ls_shell.number_reflns_R_free 75 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 pitt.param pitt.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3FTM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3FTM _struct.title 'Class II ligase ribozyme product-template duplex, structure 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FTM _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;ribozyme, ligase, 2'-5', 2-5, 2p5, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 4 ? O N N 4 ? P N N 5 ? Q N N 5 ? R N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 3FTM 3FTM 1 1 GUGUGAGGCUG ? 2 PDB 3FTM 3FTM 2 1 CCAGUCGGAACA ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3FTM A 1 ? 11 ? 3FTM 43 ? 53 ? 43 53 2 1 3FTM C 1 ? 11 ? 3FTM 43 ? 53 ? 43 53 3 2 3FTM B 1 ? 12 ? 3FTM -6 ? 6 ? -6 6 4 2 3FTM D 1 ? 12 ? 3FTM -6 ? 6 ? -6 6 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1930 ? 1 MORE -46 ? 1 'SSA (A^2)' 4260 ? 2 'ABSA (A^2)' 2060 ? 2 MORE -31 ? 2 'SSA (A^2)' 4290 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,P,Q 2 1 C,D,K,L,M,N,O,R # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details 1 ? 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? B C 6 "O2'" ? ? ? 1_555 B G 7 P ? ? B C -1 B G 1 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale one ? D C 6 "O2'" ? ? ? 1_555 D G 7 P ? ? D C -1 D G 1 1_555 ? ? ? ? ? ? ? 1.606 ? ? metalc1 metalc ? ? A A 6 "O2'" ? ? ? 1_555 F MG . MG ? ? A A 48 A MG 306 1_555 ? ? ? ? ? ? ? 2.170 ? ? metalc2 metalc ? ? E MG . MG ? ? ? 1_555 P HOH . O ? ? A MG 204 A HOH 310 1_555 ? ? ? ? ? ? ? 2.222 ? ? metalc3 metalc ? ? B A 9 OP2 ? ? ? 1_555 G MG . MG ? ? B A 3 B MG 201 1_555 ? ? ? ? ? ? ? 1.944 ? ? metalc4 metalc ? ? G MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 201 B HOH 315 1_555 ? ? ? ? ? ? ? 2.089 ? ? metalc5 metalc ? ? D U 5 "O3'" ? ? ? 1_555 O K . K ? ? D U -2 D K 319 1_555 ? ? ? ? ? ? ? 2.662 ? ? metalc6 metalc ? ? D C 6 OP2 ? ? ? 1_555 O K . K ? ? D C -1 D K 319 1_555 ? ? ? ? ? ? ? 2.342 ? ? metalc7 metalc ? ? D C 6 OP1 ? ? ? 1_555 O K . K ? ? D C -1 D K 319 1_555 ? ? ? ? ? ? ? 2.504 ? ? metalc8 metalc ? ? D A 9 OP2 ? ? ? 1_555 N K . K ? ? D A 3 D K 202 1_555 ? ? ? ? ? ? ? 2.404 ? ? hydrog1 hydrog ? ? A U 2 N3 ? ? ? 1_555 B A 12 N1 ? ? A U 44 B A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 2 O4 ? ? ? 1_555 B A 12 N6 ? ? A U 44 B A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 45 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 45 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 45 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 46 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 46 B A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B G 8 N7 ? ? A G 47 B G 2 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog9 hydrog ? ? A A 6 N7 ? ? ? 1_555 B G 7 N2 ? ? A A 48 B G 1 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog10 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 49 B C -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 49 B C -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 49 B C -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 8 N1 ? ? ? 1_555 B U 5 O2 ? ? A G 50 B U -2 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A G 8 O6 ? ? ? 1_555 B U 5 N3 ? ? A G 50 B U -2 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 51 B G -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 51 B G -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 51 B G -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 10 N3 ? ? ? 1_555 B A 3 N1 ? ? A U 52 B A -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 10 O4 ? ? ? 1_555 B A 3 N6 ? ? A U 52 B A -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 53 B C -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 53 B C -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 53 B C -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 8 N1 ? ? ? 1_555 D C 11 O2 ? ? B G 2 D C 5 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog24 hydrog ? ? B A 9 N3 ? ? ? 1_555 C G 3 N2 ? ? B A 3 C G 45 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog25 hydrog ? ? C U 2 N3 ? ? ? 1_555 D A 12 N1 ? ? C U 44 D A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C U 2 O4 ? ? ? 1_555 D A 12 N6 ? ? C U 44 D A 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 45 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 45 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 45 D C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C U 4 N3 ? ? ? 1_555 D A 10 N1 ? ? C U 46 D A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C U 4 O4 ? ? ? 1_555 D A 10 N6 ? ? C U 46 D A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C G 5 N2 ? ? ? 1_555 D G 8 N7 ? ? C G 47 D G 2 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog33 hydrog ? ? C A 6 N7 ? ? ? 1_555 D G 7 N2 ? ? C A 48 D G 1 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog34 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 6 N3 ? ? C G 49 D C -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 6 O2 ? ? C G 49 D C -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 6 N4 ? ? C G 49 D C -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 8 N1 ? ? ? 1_555 D U 5 O2 ? ? C G 50 D U -2 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog38 hydrog ? ? C G 8 O6 ? ? ? 1_555 D U 5 N3 ? ? C G 50 D U -2 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog39 hydrog ? ? C C 9 N3 ? ? ? 1_555 D G 4 N1 ? ? C C 51 D G -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C C 9 N4 ? ? ? 1_555 D G 4 O6 ? ? C C 51 D G -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C C 9 O2 ? ? ? 1_555 D G 4 N2 ? ? C C 51 D G -3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C U 10 N3 ? ? ? 1_555 D A 3 N1 ? ? C U 52 D A -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C U 10 O4 ? ? ? 1_555 D A 3 N6 ? ? C U 52 D A -4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C G 11 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 53 D C -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C G 11 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 53 D C -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C G 11 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 53 D C -5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? B A 9 ? B A 3 ? 1_555 MG ? G MG . ? B MG 201 ? 1_555 O ? Q HOH . ? B HOH 315 ? 1_555 97.2 ? 2 "O3'" ? D U 5 ? D U -2 ? 1_555 K ? O K . ? D K 319 ? 1_555 OP2 ? D C 6 ? D C -1 ? 1_555 59.7 ? 3 "O3'" ? D U 5 ? D U -2 ? 1_555 K ? O K . ? D K 319 ? 1_555 OP1 ? D C 6 ? D C -1 ? 1_555 58.1 ? 4 OP2 ? D C 6 ? D C -1 ? 1_555 K ? O K . ? D K 319 ? 1_555 OP1 ? D C 6 ? D C -1 ? 1_555 64.1 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 201 ? 2 'BINDING SITE FOR RESIDUE MG B 201' AC2 Software D K 202 ? 1 'BINDING SITE FOR RESIDUE K D 202' AC3 Software B MG 203 ? 2 'BINDING SITE FOR RESIDUE MG B 203' AC4 Software A MG 204 ? 4 'BINDING SITE FOR RESIDUE MG A 204' AC5 Software C MG 205 ? 1 'BINDING SITE FOR RESIDUE MG C 205' AC6 Software A MG 306 ? 3 'BINDING SITE FOR RESIDUE MG A 306' AC7 Software B MG 308 ? 2 'BINDING SITE FOR RESIDUE MG B 308' AC8 Software B MG 312 ? 3 'BINDING SITE FOR RESIDUE MG B 312' AC9 Software C MG 316 ? 1 'BINDING SITE FOR RESIDUE MG C 316' BC1 Software D K 319 ? 3 'BINDING SITE FOR RESIDUE K D 319' BC2 Software C MG 322 ? 4 'BINDING SITE FOR RESIDUE MG C 322' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 A B 9 ? A B 3 . ? 1_555 ? 2 AC1 2 HOH Q . ? HOH B 315 . ? 1_555 ? 3 AC2 1 A D 9 ? A D 3 . ? 1_555 ? 4 AC3 2 A B 9 ? A B 3 . ? 1_555 ? 5 AC3 2 A B 10 ? A B 4 . ? 1_555 ? 6 AC4 4 G A 1 ? G A 43 . ? 1_655 ? 7 AC4 4 G A 11 ? G A 53 . ? 1_555 ? 8 AC4 4 HOH P . ? HOH A 309 . ? 1_555 ? 9 AC4 4 HOH P . ? HOH A 310 . ? 1_555 ? 10 AC5 1 G C 11 ? G C 53 . ? 1_555 ? 11 AC6 3 A A 6 ? A A 48 . ? 1_555 ? 12 AC6 3 A D 10 ? A D 4 . ? 1_555 ? 13 AC6 3 C D 11 ? C D 5 . ? 1_555 ? 14 AC7 2 C A 9 ? C A 51 . ? 1_555 ? 15 AC7 2 U B 5 ? U B -2 . ? 1_555 ? 16 AC8 3 G A 5 ? G A 47 . ? 1_555 ? 17 AC8 3 A A 6 ? A A 48 . ? 1_555 ? 18 AC8 3 G B 7 ? G B 1 . ? 1_555 ? 19 AC9 1 U C 4 ? U C 46 . ? 1_555 ? 20 BC1 3 G A 11 ? G A 53 . ? 3_655 ? 21 BC1 3 C D 6 ? C D -1 . ? 1_555 ? 22 BC1 3 U D 5 ? U D -2 . ? 1_555 ? 23 BC2 4 U C 4 ? U C 46 . ? 1_555 ? 24 BC2 4 G C 5 ? G C 47 . ? 1_555 ? 25 BC2 4 G D 7 ? G D 1 . ? 1_555 ? 26 BC2 4 G D 8 ? G D 2 . ? 1_555 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 MG MG MG N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3FTM 'double helix' 3FTM 'a-form double helix' 3FTM 'bulge loop' 3FTM 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 2 1_555 B A 12 1_555 -0.089 0.116 0.076 -3.077 -15.579 11.232 1 A_U44:A6_B A 44 ? B 6 ? 20 1 1 A G 3 1_555 B C 11 1_555 -0.255 0.042 0.463 -0.988 -9.348 6.108 2 A_G45:C5_B A 45 ? B 5 ? 19 1 1 A U 4 1_555 B A 10 1_555 0.286 -0.267 0.241 8.217 -6.780 0.741 3 A_U46:A4_B A 46 ? B 4 ? 20 1 1 A A 6 1_555 B G 7 1_555 -6.921 -5.076 0.170 -18.548 16.420 -1.145 4 A_A48:G1_B A 48 ? B 1 ? ? ? 1 A G 7 1_555 B C 6 1_555 -0.297 0.042 0.078 4.388 -2.646 4.598 5 A_G49:C-1_B A 49 ? B -1 ? 19 1 1 A G 8 1_555 B U 5 1_555 -2.212 -0.522 0.052 4.328 -14.041 4.707 6 A_G50:U-2_B A 50 ? B -2 ? 28 1 1 A C 9 1_555 B G 4 1_555 -0.379 -0.024 -0.054 3.778 -15.448 5.052 7 A_C51:G-3_B A 51 ? B -3 ? 19 1 1 A U 10 1_555 B A 3 1_555 0.145 -0.496 0.213 -3.923 -11.089 3.617 8 A_U52:A-4_B A 52 ? B -4 ? 20 1 1 A G 11 1_555 B C 2 1_555 0.597 -0.114 -0.108 -3.260 -7.807 -1.166 9 A_G53:C-5_B A 53 ? B -5 ? 19 1 1 C U 2 1_555 D A 12 1_555 0.212 -0.022 0.090 -4.010 -5.187 11.258 10 C_U44:A6_D C 44 ? D 6 ? 20 1 1 C G 3 1_555 D C 11 1_555 -0.409 -0.235 -0.082 -9.758 -11.923 1.595 11 C_G45:C5_D C 45 ? D 5 ? 19 1 1 C U 4 1_555 D A 10 1_555 -0.147 0.108 0.731 -3.710 2.329 5.823 12 C_U46:A4_D C 46 ? D 4 ? 20 1 1 C G 5 1_555 D G 8 1_555 7.653 -4.997 -0.669 10.505 -5.372 -44.645 13 C_G47:G2_D C 47 ? D 2 ? ? ? 1 C A 6 1_555 D G 7 1_555 -6.920 -5.280 0.318 -18.128 11.149 -3.596 14 C_A48:G1_D C 48 ? D 1 ? ? ? 1 C G 7 1_555 D C 6 1_555 -0.858 -0.134 -0.126 1.273 -0.165 9.605 15 C_G49:C-1_D C 49 ? D -1 ? 19 1 1 C G 8 1_555 D U 5 1_555 -2.347 -0.490 0.187 3.969 -14.174 9.561 16 C_G50:U-2_D C 50 ? D -2 ? 28 1 1 C C 9 1_555 D G 4 1_555 -0.611 -0.207 0.025 -0.126 -10.913 0.067 17 C_C51:G-3_D C 51 ? D -3 ? 19 1 1 C U 10 1_555 D A 3 1_555 0.142 -0.455 0.295 -6.473 -11.473 1.489 18 C_U52:A-4_D C 52 ? D -4 ? 20 1 1 C G 11 1_555 D C 2 1_555 0.253 -0.060 0.087 2.182 -7.403 0.030 19 C_G53:C-5_D C 53 ? D -5 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 2 1_555 B A 12 1_555 A G 3 1_555 B C 11 1_555 -0.537 -1.444 3.083 -3.903 6.786 31.594 -3.655 0.340 2.767 12.230 7.033 32.525 1 AA_U44G45:C5A6_BB A 44 ? B 6 ? A 45 ? B 5 ? 1 A G 3 1_555 B C 11 1_555 A U 4 1_555 B A 10 1_555 -0.128 -1.101 3.120 2.770 6.014 31.759 -2.948 0.679 2.848 10.842 -4.993 32.425 2 AA_G45U46:A4C5_BB A 45 ? B 5 ? A 46 ? B 4 ? 1 A A 6 1_555 B G 7 1_555 A G 7 1_555 B C 6 1_555 0.372 -1.872 2.655 -2.345 8.201 51.881 -2.527 -0.539 2.337 9.302 2.660 52.529 3 AA_A48G49:C-1G1_BB A 48 ? B 1 ? A 49 ? B -1 ? 1 A G 7 1_555 B C 6 1_555 A G 8 1_555 B U 5 1_555 0.184 -2.042 3.091 -3.940 7.386 25.497 -6.036 -1.268 2.362 16.189 8.635 26.814 4 AA_G49G50:U-2C-1_BB A 49 ? B -1 ? A 50 ? B -2 ? 1 A G 8 1_555 B U 5 1_555 A C 9 1_555 B G 4 1_555 -0.723 -1.772 3.242 -2.784 4.563 36.221 -3.428 0.781 3.050 7.290 4.448 36.600 5 AA_G50C51:G-3U-2_BB A 50 ? B -2 ? A 51 ? B -3 ? 1 A C 9 1_555 B G 4 1_555 A U 10 1_555 B A 3 1_555 0.195 -1.165 3.365 0.125 12.659 37.724 -3.153 -0.273 2.845 18.938 -0.186 39.718 6 AA_C51U52:A-4G-3_BB A 51 ? B -3 ? A 52 ? B -4 ? 1 A U 10 1_555 B A 3 1_555 A G 11 1_555 B C 2 1_555 -0.203 -1.452 3.157 3.385 8.716 31.003 -3.998 0.905 2.626 15.860 -6.160 32.349 7 AA_U52G53:C-5A-4_BB A 52 ? B -4 ? A 53 ? B -5 ? 1 C U 2 1_555 D A 12 1_555 C G 3 1_555 D C 11 1_555 -1.189 -1.920 3.388 3.657 10.151 29.821 -5.246 2.801 2.459 18.960 -6.831 31.671 8 CC_U44G45:C5A6_DD C 44 ? D 6 ? C 45 ? D 5 ? 1 C G 3 1_555 D C 11 1_555 C U 4 1_555 D A 10 1_555 0.801 -1.092 3.165 -4.070 13.934 28.159 -4.273 -2.134 2.254 26.524 7.747 31.613 9 CC_G45U46:A4C5_DD C 45 ? D 5 ? C 46 ? D 4 ? 1 C U 4 1_555 D A 10 1_555 C G 5 1_555 D G 8 1_555 -0.422 -1.712 4.998 -1.812 17.877 82.325 -1.915 0.251 4.628 13.438 1.362 83.920 10 CC_U46G47:G2A4_DD C 46 ? D 4 ? C 47 ? D 2 ? 1 C G 5 1_555 D G 8 1_555 C A 6 1_555 D G 7 1_555 3.261 -0.795 3.880 4.512 -0.590 -17.253 2.929 13.311 2.909 1.923 14.710 -17.838 11 CC_G47A48:G1G2_DD C 47 ? D 2 ? C 48 ? D 1 ? 1 C A 6 1_555 D G 7 1_555 C G 7 1_555 D C 6 1_555 0.678 -1.837 2.756 -2.465 9.611 48.042 -2.786 -0.964 2.334 11.660 2.991 48.997 12 CC_A48G49:C-1G1_DD C 48 ? D 1 ? C 49 ? D -1 ? 1 C G 7 1_555 D C 6 1_555 C G 8 1_555 D U 5 1_555 0.426 -1.970 2.928 -7.235 9.734 31.220 -4.704 -1.691 2.090 17.291 12.851 33.439 13 CC_G49G50:U-2C-1_DD C 49 ? D -1 ? C 50 ? D -2 ? 1 C G 8 1_555 D U 5 1_555 C C 9 1_555 D G 4 1_555 -0.984 -1.876 3.272 -2.441 3.003 36.191 -3.417 1.241 3.169 4.818 3.915 36.390 14 CC_G50C51:G-3U-2_DD C 50 ? D -2 ? C 51 ? D -3 ? 1 C C 9 1_555 D G 4 1_555 C U 10 1_555 D A 3 1_555 0.077 -1.344 3.340 0.896 10.381 36.698 -3.333 -0.008 2.870 16.093 -1.389 38.100 15 CC_C51U52:A-4G-3_DD C 51 ? D -3 ? C 52 ? D -4 ? 1 C U 10 1_555 D A 3 1_555 C G 11 1_555 D C 2 1_555 0.502 -1.591 2.939 3.986 7.415 29.582 -4.240 -0.282 2.520 14.166 -7.614 30.731 16 CC_U52G53:C-5A-4_DD C 52 ? D -4 ? C 53 ? D -5 ? # _atom_sites.entry_id 3FTM _atom_sites.fract_transf_matrix[1][1] 0.031696 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031696 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005846 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K MG N O P # loop_