HEADER MEMBRANE PROTEIN 15-JAN-09 3FUZ TITLE CRYSTAL STRUCTURE OF THE HUMAN GLUTAMATE RECEPTOR, GLUR5, LIGAND- TITLE 2 BINDING CORE IN COMPLEX WITH L-GLUTAMATE IN SPACE GROUP P1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, UNP RESIDUES 445-559, 682-820; COMPND 5 SYNONYM: GLUTAMATE RECEPTOR 5, GLUR-5, GLUR5, EXCITATORY AMINO ACID COMPND 6 RECEPTOR 3, EAA3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCOLD-1 KEYWDS HUMAN GLUTAMATE RECEPTOR, LIGAND-BINDING CORE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.UNNO,M.SASAKI,M.IKEDA-SAITO REVDAT 5 30-OCT-24 3FUZ 1 REMARK REVDAT 4 01-NOV-23 3FUZ 1 REMARK SEQADV REVDAT 3 16-AUG-17 3FUZ 1 SOURCE REMARK REVDAT 2 26-OCT-11 3FUZ 1 JRNL VERSN REVDAT 1 19-JAN-10 3FUZ 0 JRNL AUTH M.UNNO,M.SHINOHARA,K.TAKAYAMA,H.TANAKA,K.TERUYA,K.DOH-URA, JRNL AUTH 2 R.SAKAI,M.SASAKI,M.IKEDA-SAITO JRNL TITL BINDING AND SELECTIVITY OF THE MARINE TOXIN NEODYSIHERBAINE JRNL TITL 2 A AND ITS SYNTHETIC ANALOGUES TO GLUK1 AND GLUK2 KAINATE JRNL TITL 3 RECEPTORS. JRNL REF J.MOL.BIOL. V. 413 667 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21893069 JRNL DOI 10.1016/J.JMB.2011.08.043 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 56612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3862 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4049 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 436 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45000 REMARK 3 B22 (A**2) : -0.57000 REMARK 3 B33 (A**2) : 0.89000 REMARK 3 B12 (A**2) : -0.19000 REMARK 3 B13 (A**2) : 0.17000 REMARK 3 B23 (A**2) : 0.06000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.784 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4192 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5664 ; 1.313 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 5.729 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;31.054 ;24.045 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 780 ;13.249 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;12.944 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3076 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2017 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2933 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 390 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2634 ; 0.840 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4129 ; 1.240 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1801 ; 2.141 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1535 ; 3.232 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 415 A 517 REMARK 3 RESIDUE RANGE : A 750 A 790 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8950 -5.3010 18.8200 REMARK 3 T TENSOR REMARK 3 T11: -0.0365 T22: -0.0298 REMARK 3 T33: -0.0168 T12: 0.0095 REMARK 3 T13: 0.0016 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.4959 L22: 1.0264 REMARK 3 L33: 0.8056 L12: 0.0526 REMARK 3 L13: -0.0950 L23: -0.1841 REMARK 3 S TENSOR REMARK 3 S11: -0.0269 S12: -0.0456 S13: 0.0146 REMARK 3 S21: -0.0258 S22: 0.0114 S23: 0.0162 REMARK 3 S31: -0.0283 S32: -0.0408 S33: 0.0155 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 415 B 517 REMARK 3 RESIDUE RANGE : B 750 B 790 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5490 -14.1700 -10.4260 REMARK 3 T TENSOR REMARK 3 T11: -0.0324 T22: -0.0242 REMARK 3 T33: -0.0290 T12: -0.0100 REMARK 3 T13: 0.0067 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.5481 L22: 1.2718 REMARK 3 L33: 0.8044 L12: 0.0270 REMARK 3 L13: 0.1759 L23: -0.3696 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: 0.0701 S13: -0.0083 REMARK 3 S21: -0.0064 S22: -0.0099 S23: -0.0005 REMARK 3 S31: 0.0736 S32: -0.0455 S33: 0.0394 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 522 A 746 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1330 -22.0270 21.7310 REMARK 3 T TENSOR REMARK 3 T11: -0.0393 T22: -0.0194 REMARK 3 T33: -0.0261 T12: 0.0257 REMARK 3 T13: 0.0108 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.5985 L22: 1.3498 REMARK 3 L33: 0.5934 L12: -0.1417 REMARK 3 L13: 0.0182 L23: 0.1147 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: -0.0675 S13: -0.0320 REMARK 3 S21: 0.0345 S22: 0.0040 S23: 0.0050 REMARK 3 S31: 0.0584 S32: 0.0956 S33: -0.0033 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 522 B 746 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2970 2.6750 -13.4330 REMARK 3 T TENSOR REMARK 3 T11: -0.0428 T22: -0.0164 REMARK 3 T33: -0.0179 T12: -0.0311 REMARK 3 T13: -0.0046 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.1336 L22: 1.6190 REMARK 3 L33: 0.7957 L12: -0.0276 REMARK 3 L13: 0.1356 L23: 0.0593 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: 0.0229 S13: -0.0116 REMARK 3 S21: -0.0747 S22: -0.0017 S23: -0.0985 REMARK 3 S31: -0.0830 S32: 0.1164 S33: 0.0115 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 518 A 521 REMARK 3 RESIDUE RANGE : A 747 A 749 REMARK 3 ORIGIN FOR THE GROUP (A): 7.5730 -9.7990 11.7350 REMARK 3 T TENSOR REMARK 3 T11: -0.0048 T22: -0.0042 REMARK 3 T33: 0.0035 T12: 0.0157 REMARK 3 T13: 0.0051 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.3165 L22: 3.1139 REMARK 3 L33: 0.4233 L12: -0.9376 REMARK 3 L13: 0.3630 L23: -1.0280 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: -0.1228 S13: -0.0595 REMARK 3 S21: 0.2411 S22: 0.0643 S23: -0.2542 REMARK 3 S31: 0.0645 S32: -0.0610 S33: 0.0054 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 518 B 521 REMARK 3 RESIDUE RANGE : B 747 B 749 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7440 -9.4700 -3.2740 REMARK 3 T TENSOR REMARK 3 T11: -0.0122 T22: 0.0076 REMARK 3 T33: 0.0096 T12: -0.0245 REMARK 3 T13: -0.0124 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.9625 L22: 1.2923 REMARK 3 L33: 2.6923 L12: 0.0528 REMARK 3 L13: -1.5914 L23: 0.1931 REMARK 3 S TENSOR REMARK 3 S11: -0.0940 S12: 0.0464 S13: 0.0450 REMARK 3 S21: -0.1811 S22: 0.0960 S23: -0.1568 REMARK 3 S31: -0.0349 S32: 0.1860 S33: -0.0020 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0500 -15.8940 19.4550 REMARK 3 T TENSOR REMARK 3 T11: -0.0326 T22: -0.0529 REMARK 3 T33: 0.0545 T12: 0.0260 REMARK 3 T13: -0.0222 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 25.7143 L22: 5.9986 REMARK 3 L33: 11.3878 L12: -10.8071 REMARK 3 L13: -17.1095 L23: 7.2635 REMARK 3 S TENSOR REMARK 3 S11: -1.3233 S12: 0.1902 S13: -0.2649 REMARK 3 S21: 0.6109 S22: 0.9065 S23: -0.1770 REMARK 3 S31: 0.1742 S32: -0.1272 S33: 0.4169 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 302 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2140 -3.4380 -10.9840 REMARK 3 T TENSOR REMARK 3 T11: -0.0381 T22: -0.0259 REMARK 3 T33: 0.0406 T12: -0.0127 REMARK 3 T13: -0.0076 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 30.9880 L22: 8.9391 REMARK 3 L33: 14.5885 L12: -1.5553 REMARK 3 L13: 15.0129 L23: 7.2975 REMARK 3 S TENSOR REMARK 3 S11: -1.0082 S12: -0.4440 S13: 0.1479 REMARK 3 S21: -0.3043 S22: 0.5587 S23: 0.0482 REMARK 3 S31: -0.2804 S32: -0.0443 S33: 0.4495 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FUZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59662 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37800 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2ZNT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG3350, 0.3M LISO4, PH5.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 699 CG CD OE1 NE2 REMARK 470 ARG A 785 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 787 CG OD1 ND2 REMARK 470 ASP B 479 CG OD1 OD2 REMARK 470 LYS B 480 CG CD CE NZ REMARK 470 LYS B 664 CG CD CE NZ REMARK 470 ARG B 785 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 787 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 787 56.56 96.05 REMARK 500 GLU B 426 118.11 -165.55 REMARK 500 ARG B 785 45.29 25.13 REMARK 500 ASN B 787 42.93 167.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZNS RELATED DB: PDB REMARK 900 SAME PROTEIN IN DIFFERENT SPACE GROUP REMARK 900 RELATED ID: 2ZNT RELATED DB: PDB REMARK 900 SAME PROTEIN IN DIFFERENT SPACE GROUP REMARK 900 RELATED ID: 2ZNU RELATED DB: PDB REMARK 900 SAME PROTEIN IN DIFFERENT SPACE GROUP REMARK 900 RELATED ID: 3FV1 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3FV2 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3FVG RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3FVK RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3FVN RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND REMARK 900 RELATED ID: 3FVO RELATED DB: PDB REMARK 900 SAME PROTEIN WITH DIFFERENT LIGAND DBREF 3FUZ A 415 529 UNP P39086 GRIK1_HUMAN 445 559 DBREF 3FUZ A 652 790 UNP P39086 GRIK1_HUMAN 682 820 DBREF 3FUZ B 415 529 UNP P39086 GRIK1_HUMAN 445 559 DBREF 3FUZ B 652 790 UNP P39086 GRIK1_HUMAN 682 820 SEQADV 3FUZ GLY A 600 UNP P39086 LINKER SEQADV 3FUZ THR A 601 UNP P39086 LINKER SEQADV 3FUZ GLY B 600 UNP P39086 LINKER SEQADV 3FUZ THR B 601 UNP P39086 LINKER SEQRES 1 A 256 ALA ASN ARG THR LEU ILE VAL THR THR ILE LEU GLU GLU SEQRES 2 A 256 PRO TYR VAL MET TYR ARG LYS SER ASP LYS PRO LEU TYR SEQRES 3 A 256 GLY ASN ASP ARG PHE GLU GLY TYR CYS LEU ASP LEU LEU SEQRES 4 A 256 LYS GLU LEU SER ASN ILE LEU GLY PHE ILE TYR ASP VAL SEQRES 5 A 256 LYS LEU VAL PRO ASP GLY LYS TYR GLY ALA GLN ASN ASP SEQRES 6 A 256 LYS GLY GLU TRP ASN GLY MET VAL LYS GLU LEU ILE ASP SEQRES 7 A 256 HIS ARG ALA ASP LEU ALA VAL ALA PRO LEU THR ILE THR SEQRES 8 A 256 TYR VAL ARG GLU LYS VAL ILE ASP PHE SER LYS PRO PHE SEQRES 9 A 256 MET THR LEU GLY ILE SER ILE LEU TYR ARG LYS GLY THR SEQRES 10 A 256 PRO ILE ASP SER ALA ASP ASP LEU ALA LYS GLN THR LYS SEQRES 11 A 256 ILE GLU TYR GLY ALA VAL ARG ASP GLY SER THR MET THR SEQRES 12 A 256 PHE PHE LYS LYS SER LYS ILE SER THR TYR GLU LYS MET SEQRES 13 A 256 TRP ALA PHE MET SER SER ARG GLN GLN THR ALA LEU VAL SEQRES 14 A 256 ARG ASN SER ASP GLU GLY ILE GLN ARG VAL LEU THR THR SEQRES 15 A 256 ASP TYR ALA LEU LEU MET GLU SER THR SER ILE GLU TYR SEQRES 16 A 256 VAL THR GLN ARG ASN CYS ASN LEU THR GLN ILE GLY GLY SEQRES 17 A 256 LEU ILE ASP SER LYS GLY TYR GLY VAL GLY THR PRO ILE SEQRES 18 A 256 GLY SER PRO TYR ARG ASP LYS ILE THR ILE ALA ILE LEU SEQRES 19 A 256 GLN LEU GLN GLU GLU GLY LYS LEU HIS MET MET LYS GLU SEQRES 20 A 256 LYS TRP TRP ARG GLY ASN GLY CYS PRO SEQRES 1 B 256 ALA ASN ARG THR LEU ILE VAL THR THR ILE LEU GLU GLU SEQRES 2 B 256 PRO TYR VAL MET TYR ARG LYS SER ASP LYS PRO LEU TYR SEQRES 3 B 256 GLY ASN ASP ARG PHE GLU GLY TYR CYS LEU ASP LEU LEU SEQRES 4 B 256 LYS GLU LEU SER ASN ILE LEU GLY PHE ILE TYR ASP VAL SEQRES 5 B 256 LYS LEU VAL PRO ASP GLY LYS TYR GLY ALA GLN ASN ASP SEQRES 6 B 256 LYS GLY GLU TRP ASN GLY MET VAL LYS GLU LEU ILE ASP SEQRES 7 B 256 HIS ARG ALA ASP LEU ALA VAL ALA PRO LEU THR ILE THR SEQRES 8 B 256 TYR VAL ARG GLU LYS VAL ILE ASP PHE SER LYS PRO PHE SEQRES 9 B 256 MET THR LEU GLY ILE SER ILE LEU TYR ARG LYS GLY THR SEQRES 10 B 256 PRO ILE ASP SER ALA ASP ASP LEU ALA LYS GLN THR LYS SEQRES 11 B 256 ILE GLU TYR GLY ALA VAL ARG ASP GLY SER THR MET THR SEQRES 12 B 256 PHE PHE LYS LYS SER LYS ILE SER THR TYR GLU LYS MET SEQRES 13 B 256 TRP ALA PHE MET SER SER ARG GLN GLN THR ALA LEU VAL SEQRES 14 B 256 ARG ASN SER ASP GLU GLY ILE GLN ARG VAL LEU THR THR SEQRES 15 B 256 ASP TYR ALA LEU LEU MET GLU SER THR SER ILE GLU TYR SEQRES 16 B 256 VAL THR GLN ARG ASN CYS ASN LEU THR GLN ILE GLY GLY SEQRES 17 B 256 LEU ILE ASP SER LYS GLY TYR GLY VAL GLY THR PRO ILE SEQRES 18 B 256 GLY SER PRO TYR ARG ASP LYS ILE THR ILE ALA ILE LEU SEQRES 19 B 256 GLN LEU GLN GLU GLU GLY LYS LEU HIS MET MET LYS GLU SEQRES 20 B 256 LYS TRP TRP ARG GLY ASN GLY CYS PRO HET GLU A 301 10 HET SO4 A 1 5 HET SO4 A 3 5 HET GLU B 302 10 HET SO4 B 2 5 HETNAM GLU GLUTAMIC ACID HETNAM SO4 SULFATE ION FORMUL 3 GLU 2(C5 H9 N O4) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 HOH *436(H2 O) HELIX 1 1 TYR A 440 ASP A 443 5 4 HELIX 2 2 GLY A 447 GLY A 461 1 15 HELIX 3 3 ASN A 484 ASP A 492 1 9 HELIX 4 4 THR A 505 LYS A 510 1 6 HELIX 5 5 SER A 655 GLN A 662 1 8 HELIX 6 6 GLY A 673 SER A 682 1 10 HELIX 7 7 ILE A 684 ARG A 697 1 14 HELIX 8 8 ARG A 697 LEU A 702 1 6 HELIX 9 9 ASN A 705 THR A 716 1 12 HELIX 10 10 SER A 724 GLN A 732 1 9 HELIX 11 11 TYR A 759 GLU A 773 1 15 HELIX 12 12 GLY A 774 ARG A 785 1 12 HELIX 13 13 TYR B 440 ASP B 443 5 4 HELIX 14 14 GLY B 447 GLY B 461 1 15 HELIX 15 15 ASN B 484 ASP B 492 1 9 HELIX 16 16 THR B 505 LYS B 510 1 6 HELIX 17 17 SER B 655 GLN B 662 1 8 HELIX 18 18 GLY B 673 SER B 682 1 10 HELIX 19 19 ILE B 684 ARG B 697 1 14 HELIX 20 20 ARG B 697 ALA B 701 1 5 HELIX 21 21 ASN B 705 THR B 716 1 12 HELIX 22 22 SER B 724 GLN B 732 1 9 HELIX 23 23 TYR B 759 GLU B 773 1 15 HELIX 24 24 GLY B 774 ARG B 785 1 12 SHEET 1 A 3 TYR A 464 LEU A 468 0 SHEET 2 A 3 LEU A 419 THR A 423 1 N VAL A 421 O LYS A 467 SHEET 3 A 3 LEU A 497 ALA A 498 1 O LEU A 497 N THR A 422 SHEET 1 B 2 MET A 431 TYR A 432 0 SHEET 2 B 2 PHE A 445 GLU A 446 -1 O GLU A 446 N MET A 431 SHEET 1 C 2 ILE A 512 PHE A 514 0 SHEET 2 C 2 GLY A 752 PRO A 754 -1 O THR A 753 N ASP A 513 SHEET 1 D 2 MET A 519 LEU A 521 0 SHEET 2 D 2 LYS A 747 TYR A 749 -1 O LYS A 747 N LEU A 521 SHEET 1 E 4 GLU A 666 GLY A 668 0 SHEET 2 E 4 TYR A 718 GLU A 723 1 O LEU A 721 N GLY A 668 SHEET 3 E 4 ILE A 523 ARG A 528 -1 N LEU A 526 O LEU A 720 SHEET 4 E 4 LEU A 737 ILE A 740 -1 O ILE A 740 N ILE A 525 SHEET 1 F 3 TYR B 464 LEU B 468 0 SHEET 2 F 3 LEU B 419 THR B 423 1 N VAL B 421 O LYS B 467 SHEET 3 F 3 LEU B 497 ALA B 498 1 O LEU B 497 N THR B 422 SHEET 1 G 2 MET B 431 TYR B 432 0 SHEET 2 G 2 PHE B 445 GLU B 446 -1 O GLU B 446 N MET B 431 SHEET 1 H 2 ILE B 512 PHE B 514 0 SHEET 2 H 2 GLY B 752 PRO B 754 -1 O THR B 753 N ASP B 513 SHEET 1 I 2 MET B 519 LEU B 521 0 SHEET 2 I 2 LYS B 747 TYR B 749 -1 O LYS B 747 N LEU B 521 SHEET 1 J 5 LEU B 702 VAL B 703 0 SHEET 2 J 5 GLU B 666 VAL B 670 1 N ALA B 669 O VAL B 703 SHEET 3 J 5 TYR B 718 GLU B 723 1 O LEU B 721 N GLY B 668 SHEET 4 J 5 ILE B 523 ARG B 528 -1 N LEU B 526 O LEU B 720 SHEET 5 J 5 LEU B 737 ILE B 740 -1 O ILE B 740 N ILE B 525 SSBOND 1 CYS A 735 CYS A 789 1555 1555 2.05 SSBOND 2 CYS B 735 CYS B 789 1555 1555 2.05 CISPEP 1 GLU A 427 PRO A 428 0 -5.32 CISPEP 2 ARG A 785 GLY A 786 0 -4.76 CISPEP 3 GLY A 786 ASN A 787 0 0.37 CISPEP 4 GLU B 427 PRO B 428 0 -5.28 SITE 1 AC1 13 HOH A 4 HOH A 15 HOH A 30 HOH A 40 SITE 2 AC1 13 TYR A 474 PRO A 501 LEU A 502 THR A 503 SITE 3 AC1 13 ARG A 508 GLY A 673 SER A 674 THR A 675 SITE 4 AC1 13 GLU A 723 SITE 1 AC2 6 HOH A 74 HOH A 90 HOH A 165 ARG A 444 SITE 2 AC2 6 LEU A 468 ARG B 704 SITE 1 AC3 3 HOH A 103 LYS A 664 LYS A 782 SITE 1 AC4 14 HOH A 6 HOH A 9 HOH A 21 HOH A 52 SITE 2 AC4 14 TYR B 474 PRO B 501 LEU B 502 THR B 503 SITE 3 AC4 14 ARG B 508 GLY B 673 SER B 674 THR B 675 SITE 4 AC4 14 GLU B 723 TYR B 749 SITE 1 AC5 4 ARG B 444 VAL B 466 LYS B 467 LEU B 468 CRYST1 47.617 50.724 63.254 93.52 96.41 117.86 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021001 0.011102 0.003828 0.00000 SCALE2 0.000000 0.022300 0.002907 0.00000 SCALE3 0.000000 0.000000 0.016043 0.00000