HEADER VIRAL PROTEIN 15-JAN-09 3FVC TITLE CRYSTAL STRUCTURE OF A TRIMERIC VARIANT OF THE EPSTEIN-BARR VIRUS TITLE 2 GLYCOPROTEIN B COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN GP110; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ECTODOMAIN; COMPND 5 SYNONYM: GP115; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 3 ORGANISM_TAXID: 10377; SOURCE 4 STRAIN: B95; SOURCE 5 GENE: BALF4, VGLB_EBV; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PBACGUS-3 KEYWDS VIRAL FUSION PROTEIN, PH DOMAINS, FUSION LOOPS, GLYCOPROTEIN, LATE KEYWDS 2 PROTEIN, MEMBRANE, TRANSMEMBRANE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BACKOVIC REVDAT 6 06-SEP-23 3FVC 1 REMARK REVDAT 5 20-OCT-21 3FVC 1 SEQADV HETSYN REVDAT 4 29-JUL-20 3FVC 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 01-NOV-17 3FVC 1 REMARK REVDAT 2 13-JUL-11 3FVC 1 VERSN REVDAT 1 17-MAR-09 3FVC 0 JRNL AUTH M.BACKOVIC,R.LONGNECKER,T.S.JARDETZKY JRNL TITL STRUCTURE OF A TRIMERIC VARIANT OF THE EPSTEIN-BARR VIRUS JRNL TITL 2 GLYCOPROTEIN B JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 2880 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19196955 JRNL DOI 10.1073/PNAS.0810530106 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 21144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2155 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1406 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4501 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.79000 REMARK 3 B22 (A**2) : 2.79000 REMARK 3 B33 (A**2) : -4.18000 REMARK 3 B12 (A**2) : 1.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.003 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.436 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.288 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.993 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.887 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.854 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4639 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6280 ; 1.728 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 553 ; 6.856 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;34.646 ;23.863 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 788 ;23.129 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;20.633 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 704 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3507 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1948 ; 0.300 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3185 ; 0.354 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 230 ; 0.215 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.137 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 171 ; 0.307 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.304 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2813 ; 1.074 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4504 ; 1.853 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2014 ; 1.103 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1776 ; 1.837 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): -42.3534 19.8990 58.3826 REMARK 3 T TENSOR REMARK 3 T11: -0.2108 T22: -0.2077 REMARK 3 T33: -0.2825 T12: 0.0642 REMARK 3 T13: 0.0793 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 0.5874 L22: 0.7182 REMARK 3 L33: 4.2438 L12: 0.0087 REMARK 3 L13: 0.2234 L23: -0.8625 REMARK 3 S TENSOR REMARK 3 S11: -0.0070 S12: 0.5219 S13: -0.1549 REMARK 3 S21: -0.4857 S22: -0.1299 S23: -0.0913 REMARK 3 S31: 0.4748 S32: 0.5696 S33: 0.1369 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 534 A 620 REMARK 3 ORIGIN FOR THE GROUP (A): -59.3802 54.6515 -20.6882 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: -0.0002 REMARK 3 T33: 0.0003 T12: 0.0000 REMARK 3 T13: -0.0001 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 32.0089 L22: 26.2006 REMARK 3 L33: 25.4695 L12: 6.7653 REMARK 3 L13: 0.7670 L23: -5.0166 REMARK 3 S TENSOR REMARK 3 S11: 0.0932 S12: -0.3399 S13: -0.0335 REMARK 3 S21: -0.6922 S22: -0.2818 S23: 0.1165 REMARK 3 S31: -0.0940 S32: -0.1141 S33: 0.1887 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 621 A 680 REMARK 3 ORIGIN FOR THE GROUP (A): -60.3680 38.9872 61.0159 REMARK 3 T TENSOR REMARK 3 T11: 0.0003 T22: 0.0010 REMARK 3 T33: 0.0016 T12: 0.0003 REMARK 3 T13: -0.0007 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.1686 L22: 0.0185 REMARK 3 L33: 7.0544 L12: 0.0233 REMARK 3 L13: 1.0398 L23: 0.2424 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: 0.4096 S13: 0.2133 REMARK 3 S21: -0.6035 S22: 0.0638 S23: -0.1639 REMARK 3 S31: -1.2121 S32: -0.1021 S33: -0.1236 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FVC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0379 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23367 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GUM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M N-CYCLOHEXYL-3 REMARK 280 -AMINOPROPANESULFONIC ACID (CAPS) PH 10.5 OR 11.5, 1.40 M (NH4) REMARK 280 2SO4 (AS) AND 0.2 M LI2SO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 38640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 81890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -53.40000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 92.49151 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -106.80000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 23 REMARK 465 THR A 24 REMARK 465 PRO A 25 REMARK 465 GLU A 26 REMARK 465 GLN A 27 REMARK 465 PRO A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 PRO A 31 REMARK 465 ALA A 32 REMARK 465 THR A 33 REMARK 465 THR A 34 REMARK 465 VAL A 35 REMARK 465 GLN A 36 REMARK 465 PRO A 37 REMARK 465 THR A 38 REMARK 465 ALA A 39 REMARK 465 THR A 40 REMARK 465 ARG A 41 REMARK 465 GLY A 72 REMARK 465 THR A 73 REMARK 465 ARG A 74 REMARK 465 ALA A 391 REMARK 465 THR A 392 REMARK 465 VAL A 393 REMARK 465 LYS A 394 REMARK 465 ASN A 395 REMARK 465 LEU A 396 REMARK 465 THR A 397 REMARK 465 GLU A 398 REMARK 465 LEU A 399 REMARK 465 THR A 400 REMARK 465 THR A 401 REMARK 465 PRO A 402 REMARK 465 THR A 403 REMARK 465 SER A 404 REMARK 465 SER A 405 REMARK 465 PRO A 406 REMARK 465 PRO A 407 REMARK 465 SER A 408 REMARK 465 SER A 409 REMARK 465 PRO A 410 REMARK 465 SER A 411 REMARK 465 PRO A 412 REMARK 465 PRO A 413 REMARK 465 ALA A 414 REMARK 465 PRO A 415 REMARK 465 SER A 416 REMARK 465 ALA A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 GLY A 420 REMARK 465 SER A 421 REMARK 465 THR A 422 REMARK 465 PRO A 423 REMARK 465 ALA A 424 REMARK 465 ALA A 425 REMARK 465 VAL A 426 REMARK 465 LEU A 427 REMARK 465 ARG A 428 REMARK 465 ARG A 429 REMARK 465 ARG A 430 REMARK 465 ARG A 431 REMARK 465 ARG A 432 REMARK 465 ASP A 433 REMARK 465 ALA A 434 REMARK 465 GLY A 435 REMARK 465 ASN A 436 REMARK 465 ALA A 437 REMARK 465 THR A 438 REMARK 465 THR A 439 REMARK 465 PRO A 440 REMARK 465 VAL A 441 REMARK 465 PRO A 442 REMARK 465 PRO A 443 REMARK 465 THR A 444 REMARK 465 ALA A 445 REMARK 465 PRO A 446 REMARK 465 GLY A 447 REMARK 465 VAL A 544 REMARK 465 PRO A 545 REMARK 465 GLY A 546 REMARK 465 SER A 547 REMARK 465 GLU A 548 REMARK 465 THR A 549 REMARK 465 ILE A 562 REMARK 465 ASN A 563 REMARK 465 ASP A 564 REMARK 465 LEU A 580 REMARK 465 THR A 581 REMARK 465 LYS A 582 REMARK 465 LYS A 583 REMARK 465 MET A 584 REMARK 465 THR A 585 REMARK 465 GLU A 586 REMARK 465 VAL A 587 REMARK 465 CYS A 588 REMARK 465 GLN A 589 REMARK 465 ASN A 680 REMARK 465 ALA A 681 REMARK 465 VAL A 682 REMARK 465 SER A 683 REMARK 465 ASN A 684 REMARK 465 GLY A 685 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 296 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 48 96.14 -56.77 REMARK 500 GLU A 52 40.22 -98.49 REMARK 500 SER A 55 59.01 -102.40 REMARK 500 HIS A 56 61.54 33.22 REMARK 500 THR A 100 142.95 177.36 REMARK 500 SER A 126 -179.36 -68.97 REMARK 500 ALA A 175 119.63 -38.95 REMARK 500 ASP A 189 50.25 -155.32 REMARK 500 PRO A 218 31.98 -88.39 REMARK 500 PHE A 219 49.64 71.77 REMARK 500 LYS A 239 -12.75 93.25 REMARK 500 ASP A 249 16.17 -141.04 REMARK 500 ARG A 265 125.71 -37.71 REMARK 500 SER A 314 -169.60 -124.96 REMARK 500 THR A 330 -43.00 -137.33 REMARK 500 VAL A 332 -10.98 90.25 REMARK 500 LYS A 341 -17.26 -42.73 REMARK 500 GLU A 344 -63.27 -26.25 REMARK 500 VAL A 358 14.20 -151.11 REMARK 500 SER A 389 154.88 -46.98 REMARK 500 ASN A 454 60.25 -100.16 REMARK 500 ALA A 480 -71.03 -51.12 REMARK 500 ASN A 491 -70.25 -64.20 REMARK 500 THR A 503 -73.58 -52.72 REMARK 500 SER A 526 -163.51 -121.25 REMARK 500 ALA A 534 -76.12 -55.59 REMARK 500 PRO A 555 160.05 -49.66 REMARK 500 ASP A 575 12.66 88.44 REMARK 500 THR A 591 66.29 63.94 REMARK 500 ASP A 607 60.94 39.50 REMARK 500 TYR A 608 12.48 57.71 REMARK 500 PHE A 611 -63.94 -127.47 REMARK 500 LEU A 628 79.42 -106.02 REMARK 500 SER A 645 -176.76 -69.95 REMARK 500 ALA A 651 0.74 -51.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 3FVC A 23 685 UNP P03188 VGLB_EBV 23 685 SEQADV 3FVC HIS A 112 UNP P03188 TRP 112 ENGINEERED MUTATION SEQADV 3FVC ARG A 113 UNP P03188 TYR 113 ENGINEERED MUTATION SEQADV 3FVC ARG A 193 UNP P03188 TRP 193 ENGINEERED MUTATION SEQADV 3FVC VAL A 194 UNP P03188 LEU 194 ENGINEERED MUTATION SEQADV 3FVC GLU A 195 UNP P03188 ILE 195 ENGINEERED MUTATION SEQADV 3FVC ALA A 196 UNP P03188 TRP 196 ENGINEERED MUTATION SEQRES 1 A 663 GLN THR PRO GLU GLN PRO ALA PRO PRO ALA THR THR VAL SEQRES 2 A 663 GLN PRO THR ALA THR ARG GLN GLN THR SER PHE PRO PHE SEQRES 3 A 663 ARG VAL CYS GLU LEU SER SER HIS GLY ASP LEU PHE ARG SEQRES 4 A 663 PHE SER SER ASP ILE GLN CYS PRO SER PHE GLY THR ARG SEQRES 5 A 663 GLU ASN HIS THR GLU GLY LEU LEU MET VAL PHE LYS ASP SEQRES 6 A 663 ASN ILE ILE PRO TYR SER PHE LYS VAL ARG SER TYR THR SEQRES 7 A 663 LYS ILE VAL THR ASN ILE LEU ILE TYR ASN GLY HIS ARG SEQRES 8 A 663 ALA ASP SER VAL THR ASN ARG HIS GLU GLU LYS PHE SER SEQRES 9 A 663 VAL ASP SER TYR GLU THR ASP GLN MET ASP THR ILE TYR SEQRES 10 A 663 GLN CYS TYR ASN ALA VAL LYS MET THR LYS ASP GLY LEU SEQRES 11 A 663 THR ARG VAL TYR VAL ASP ARG ASP GLY VAL ASN ILE THR SEQRES 12 A 663 VAL ASN LEU LYS PRO THR GLY GLY LEU ALA ASN GLY VAL SEQRES 13 A 663 ARG ARG TYR ALA SER GLN THR GLU LEU TYR ASP ALA PRO SEQRES 14 A 663 GLY ARG VAL GLU ALA THR TYR ARG THR ARG THR THR VAL SEQRES 15 A 663 ASN CYS LEU ILE THR ASP MET MET ALA LYS SER ASN SER SEQRES 16 A 663 PRO PHE ASP PHE PHE VAL THR THR THR GLY GLN THR VAL SEQRES 17 A 663 GLU MET SER PRO PHE TYR ASP GLY LYS ASN LYS GLU THR SEQRES 18 A 663 PHE HIS GLU ARG ALA ASP SER PHE HIS VAL ARG THR ASN SEQRES 19 A 663 TYR LYS ILE VAL ASP TYR ASP ASN ARG GLY THR ASN PRO SEQRES 20 A 663 GLN GLY GLU ARG ARG ALA PHE LEU ASP LYS GLY THR TYR SEQRES 21 A 663 THR LEU SER TRP LYS LEU GLU ASN ARG THR ALA TYR CYS SEQRES 22 A 663 PRO LEU GLN HIS TRP GLN THR PHE ASP SER THR ILE ALA SEQRES 23 A 663 THR GLU THR GLY LYS SER ILE HIS PHE VAL THR ASP GLU SEQRES 24 A 663 GLY THR SER SER PHE VAL THR ASN THR THR VAL GLY ILE SEQRES 25 A 663 GLU LEU PRO ASP ALA PHE LYS CYS ILE GLU GLU GLN VAL SEQRES 26 A 663 ASN LYS THR MET HIS GLU LYS TYR GLU ALA VAL GLN ASP SEQRES 27 A 663 ARG TYR THR LYS GLY GLN GLU ALA ILE THR TYR PHE ILE SEQRES 28 A 663 THR SER GLY GLY LEU LEU LEU ALA TRP LEU PRO LEU THR SEQRES 29 A 663 PRO ARG SER LEU ALA THR VAL LYS ASN LEU THR GLU LEU SEQRES 30 A 663 THR THR PRO THR SER SER PRO PRO SER SER PRO SER PRO SEQRES 31 A 663 PRO ALA PRO SER ALA ALA ARG GLY SER THR PRO ALA ALA SEQRES 32 A 663 VAL LEU ARG ARG ARG ARG ARG ASP ALA GLY ASN ALA THR SEQRES 33 A 663 THR PRO VAL PRO PRO THR ALA PRO GLY LYS SER LEU GLY SEQRES 34 A 663 THR LEU ASN ASN PRO ALA THR VAL GLN ILE GLN PHE ALA SEQRES 35 A 663 TYR ASP SER LEU ARG ARG GLN ILE ASN ARG MET LEU GLY SEQRES 36 A 663 ASP LEU ALA ARG ALA TRP CYS LEU GLU GLN LYS ARG GLN SEQRES 37 A 663 ASN MET VAL LEU ARG GLU LEU THR LYS ILE ASN PRO THR SEQRES 38 A 663 THR VAL MET SER SER ILE TYR GLY LYS ALA VAL ALA ALA SEQRES 39 A 663 LYS ARG LEU GLY ASP VAL ILE SER VAL SER GLN CYS VAL SEQRES 40 A 663 PRO VAL ASN GLN ALA THR VAL THR LEU ARG LYS SER MET SEQRES 41 A 663 ARG VAL PRO GLY SER GLU THR MET CYS TYR SER ARG PRO SEQRES 42 A 663 LEU VAL SER PHE SER PHE ILE ASN ASP THR LYS THR TYR SEQRES 43 A 663 GLU GLY GLN LEU GLY THR ASP ASN GLU ILE PHE LEU THR SEQRES 44 A 663 LYS LYS MET THR GLU VAL CYS GLN ALA THR SER GLN TYR SEQRES 45 A 663 TYR PHE GLN SER GLY ASN GLU ILE HIS VAL TYR ASN ASP SEQRES 46 A 663 TYR HIS HIS PHE LYS THR ILE GLU LEU ASP GLY ILE ALA SEQRES 47 A 663 THR LEU GLN THR PHE ILE SER LEU ASN THR SER LEU ILE SEQRES 48 A 663 GLU ASN ILE ASP PHE ALA SER LEU GLU LEU TYR SER ARG SEQRES 49 A 663 ASP GLU GLN ARG ALA SER ASN VAL PHE ASP LEU GLU GLY SEQRES 50 A 663 ILE PHE ARG GLU TYR ASN PHE GLN ALA GLN ASN ILE ALA SEQRES 51 A 663 GLY LEU ARG LYS ASP LEU ASP ASN ALA VAL SER ASN GLY MODRES 3FVC ASN A 163 ASN GLYCOSYLATION SITE MODRES 3FVC ASN A 290 ASN GLYCOSYLATION SITE MODRES 3FVC ASN A 629 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET NAG A 686 14 HET NAG A 687 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 5 HOH *9(H2 O) HELIX 1 1 ASP A 128 ASP A 136 1 9 HELIX 2 2 ARG A 159 GLY A 161 5 3 HELIX 3 3 ASP A 261 ARG A 265 5 5 HELIX 4 4 ASN A 290 TYR A 294 5 5 HELIX 5 5 PHE A 340 CYS A 342 5 3 HELIX 6 6 ILE A 343 ALA A 357 1 15 HELIX 7 7 ALA A 457 LYS A 499 1 43 HELIX 8 8 ASN A 501 GLY A 511 1 11 HELIX 9 9 SER A 645 ALA A 651 1 7 HELIX 10 10 ASP A 656 LEU A 674 1 19 SHEET 1 A 6 VAL A 529 PRO A 530 0 SHEET 2 A 6 ARG A 49 VAL A 50 -1 N VAL A 50 O VAL A 529 SHEET 3 A 6 GLU A 577 PHE A 579 1 O ILE A 578 N ARG A 49 SHEET 4 A 6 THR A 567 LEU A 572 -1 N GLN A 571 O PHE A 579 SHEET 5 A 6 LEU A 556 SER A 560 -1 N VAL A 557 O GLY A 570 SHEET 6 A 6 VAL A 536 LEU A 538 -1 N THR A 537 O SER A 558 SHEET 1 B 3 ASP A 58 PHE A 60 0 SHEET 2 B 3 VAL A 522 VAL A 525 -1 O VAL A 525 N ASP A 58 SHEET 3 B 3 ALA A 516 LEU A 519 -1 N LEU A 519 O VAL A 522 SHEET 1 C 6 SER A 324 THR A 328 0 SHEET 2 C 6 ILE A 315 THR A 319 -1 N PHE A 317 O PHE A 326 SHEET 3 C 6 LEU A 297 GLU A 310 -1 N THR A 309 O HIS A 316 SHEET 4 C 6 HIS A 77 ASP A 87 -1 N LEU A 82 O PHE A 303 SHEET 5 C 6 LEU A 379 PRO A 387 -1 O ALA A 381 N MET A 83 SHEET 6 C 6 TYR A 362 LYS A 364 -1 N THR A 363 O THR A 386 SHEET 1 D 6 SER A 324 THR A 328 0 SHEET 2 D 6 ILE A 315 THR A 319 -1 N PHE A 317 O PHE A 326 SHEET 3 D 6 LEU A 297 GLU A 310 -1 N THR A 309 O HIS A 316 SHEET 4 D 6 HIS A 77 ASP A 87 -1 N LEU A 82 O PHE A 303 SHEET 5 D 6 LEU A 379 PRO A 387 -1 O ALA A 381 N MET A 83 SHEET 6 D 6 THR A 370 ILE A 373 -1 N PHE A 372 O LEU A 380 SHEET 1 E 5 ASP A 115 PHE A 125 0 SHEET 2 E 5 TYR A 92 ASN A 110 -1 N TYR A 109 O SER A 116 SHEET 3 E 5 THR A 197 SER A 215 -1 O ASN A 205 N ILE A 102 SHEET 4 E 5 PHE A 222 THR A 224 -1 O VAL A 223 N LYS A 214 SHEET 5 E 5 THR A 229 VAL A 230 -1 O VAL A 230 N PHE A 222 SHEET 1 F 7 LYS A 169 PRO A 170 0 SHEET 2 F 7 ARG A 179 ALA A 182 -1 O ALA A 182 N LYS A 169 SHEET 3 F 7 THR A 197 SER A 215 -1 O ASP A 210 N ARG A 179 SHEET 4 F 7 TYR A 92 ASN A 110 -1 N ILE A 102 O ASN A 205 SHEET 5 F 7 THR A 283 LYS A 287 -1 O SER A 285 N ARG A 97 SHEET 6 F 7 GLU A 272 ASP A 278 -1 N LEU A 277 O LEU A 284 SHEET 7 F 7 PHE A 251 TYR A 257 -1 N TYR A 257 O GLU A 272 SHEET 1 G 2 GLN A 140 TYR A 142 0 SHEET 2 G 2 THR A 165 ASN A 167 -1 O VAL A 166 N CYS A 141 SHEET 1 H 2 ALA A 144 LYS A 149 0 SHEET 2 H 2 LEU A 152 VAL A 157 -1 O ARG A 154 N MET A 147 SHEET 1 I 3 GLN A 593 SER A 598 0 SHEET 2 I 3 GLU A 601 ASN A 606 -1 O HIS A 603 N PHE A 596 SHEET 3 I 3 HIS A 609 GLU A 615 -1 O ILE A 614 N ILE A 602 SSBOND 1 CYS A 51 CYS A 528 1555 1555 2.03 SSBOND 2 CYS A 68 CYS A 484 1555 1555 2.03 SSBOND 3 CYS A 141 CYS A 206 1555 1555 2.09 SSBOND 4 CYS A 295 CYS A 342 1555 1555 2.06 LINK C1 NAG A 1 ND2 ASN A 163 1555 1555 1.48 LINK ND2 ASN A 290 C1 NAG A 686 1555 1555 1.45 LINK ND2 ASN A 629 C1 NAG A 687 1555 1555 1.46 CISPEP 1 SER A 217 PRO A 218 0 9.16 CRYST1 106.800 106.800 210.750 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009363 0.005406 0.000000 0.00000 SCALE2 0.000000 0.010812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004745 0.00000