HEADER HYDROLASE 16-JAN-09 3FVY TITLE CRYSTAL STRUCTURE OF HUMAN DIPEPTIDYL PEPTIDASE III COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPEPTIDYL-PEPTIDASE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIPEPTIDYL-PEPTIDASE III, DPP III, DIPEPTIDYL AMINOPEPTIDASE COMPND 5 III, DIPEPTIDYL ARYLAMIDASE III; COMPND 6 EC: 3.4.14.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPP3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFHMSP-LIC-N KEYWDS SGC, DPP3, DIPEPTIDYL PEPTIDASE III, AMINOPEPTIDASE, HYDROLASE, KEYWDS 2 METAL-BINDING, METALLOPROTEASE, PHOSPHOPROTEIN, PROTEASE, STRUCTURAL KEYWDS 3 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,E.DOBROVETSKY,A.SEITOVA,B.DUNCAN,L.CROMBET,M.SUNDSTROM, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,A.BOCHKAREV,D.COSSAR,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 3 06-SEP-23 3FVY 1 REMARK SEQADV LINK REVDAT 2 25-FEB-15 3FVY 1 JRNL VERSN REVDAT 1 03-FEB-09 3FVY 0 JRNL AUTH G.A.BEZERRA,E.DOBROVETSKY,R.VIERTLMAYR,A.DONG,A.BINTER, JRNL AUTH 2 M.ABRAMIC,P.MACHEROUX,S.DHE-PAGANON,K.GRUBER JRNL TITL ENTROPY-DRIVEN BINDING OF OPIOID PEPTIDES INDUCES A LARGE JRNL TITL 2 DOMAIN MOTION IN HUMAN DIPEPTIDYL PEPTIDASE III. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 6525 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22493238 JRNL DOI 10.1073/PNAS.1118005109 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 60520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 925 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4226 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5634 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 603 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.157 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5772 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7826 ; 1.218 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 718 ; 5.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 271 ;32.662 ;23.764 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 945 ;12.628 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.709 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 850 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4446 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2702 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3987 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 541 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.016 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.172 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.119 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3655 ; 0.761 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5714 ; 1.239 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2410 ; 2.051 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2112 ; 3.256 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28267 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61597 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : 0.10700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : 0.78000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 3CSK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350. 0.2M MGFORM, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 75.68900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 PRO A 224 REMARK 465 SER A 225 REMARK 465 LEU A 226 REMARK 465 ASP A 227 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 20 CD NE CZ NH1 NH2 REMARK 470 ARG A 24 NE CZ NH1 NH2 REMARK 470 ASP A 73 CG OD1 OD2 REMARK 470 GLU A 131 CD OE1 OE2 REMARK 470 GLU A 138 CD OE1 OE2 REMARK 470 GLN A 145 CD OE1 NE2 REMARK 470 GLU A 149 CD OE1 OE2 REMARK 470 ARG A 157 CZ NH1 NH2 REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 SER A 228 OG REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 LYS A 266 NZ REMARK 470 GLU A 344 CG CD OE1 OE2 REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 470 GLN A 352 CD OE1 NE2 REMARK 470 LYS A 367 CE NZ REMARK 470 LEU A 369 CD1 CD2 REMARK 470 ASP A 430 OD1 OD2 REMARK 470 THR A 590 CG2 REMARK 470 ARG A 669 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 439 O HOH A 767 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 52 -65.86 -109.21 REMARK 500 LYS A 235 -179.33 -171.51 REMARK 500 PHE A 426 -9.10 79.93 REMARK 500 SER A 500 -72.62 -49.74 REMARK 500 GLU A 584 15.98 56.86 REMARK 500 ASP A 707 23.19 -150.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 739 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 164 O REMARK 620 2 GLY A 167 O 83.7 REMARK 620 3 HOH A 812 O 92.7 86.1 REMARK 620 4 HOH A 998 O 139.3 82.3 124.1 REMARK 620 5 HOH A1230 O 106.0 170.2 91.8 91.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1000 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 450 NE2 REMARK 620 2 HIS A 455 NE2 100.2 REMARK 620 3 GLU A 508 OE2 102.6 106.6 REMARK 620 4 HOH A 874 O 113.7 106.4 124.6 REMARK 620 5 HOH A1320 O 91.1 158.5 88.4 52.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 738 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 830 O REMARK 620 2 HOH A 868 O 173.9 REMARK 620 3 HOH A 899 O 90.6 85.4 REMARK 620 4 HOH A 900 O 96.2 88.5 91.0 REMARK 620 5 HOH A 924 O 93.5 90.9 172.8 82.6 REMARK 620 6 HOH A 948 O 88.4 87.3 94.2 173.0 91.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 738 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 739 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 740 DBREF 3FVY A 1 726 UNP Q9NY33 DPP3_HUMAN 1 726 SEQADV 3FVY GLY A -1 UNP Q9NY33 EXPRESSION TAG SEQADV 3FVY ALA A 0 UNP Q9NY33 EXPRESSION TAG SEQADV 3FVY HIS A 76 UNP Q9NY33 ARG 76 VARIANT SEQRES 1 A 728 GLY ALA MET ALA ASP THR GLN TYR ILE LEU PRO ASN ASP SEQRES 2 A 728 ILE GLY VAL SER SER LEU ASP CYS ARG GLU ALA PHE ARG SEQRES 3 A 728 LEU LEU SER PRO THR GLU ARG LEU TYR ALA TYR HIS LEU SEQRES 4 A 728 SER ARG ALA ALA TRP TYR GLY GLY LEU ALA VAL LEU LEU SEQRES 5 A 728 GLN THR SER PRO GLU ALA PRO TYR ILE TYR ALA LEU LEU SEQRES 6 A 728 SER ARG LEU PHE ARG ALA GLN ASP PRO ASP GLN LEU HIS SEQRES 7 A 728 GLN HIS ALA LEU ALA GLU GLY LEU THR GLU GLU GLU TYR SEQRES 8 A 728 GLN ALA PHE LEU VAL TYR ALA ALA GLY VAL TYR SER ASN SEQRES 9 A 728 MET GLY ASN TYR LYS SER PHE GLY ASP THR LYS PHE VAL SEQRES 10 A 728 PRO ASN LEU PRO LYS GLU LYS LEU GLU ARG VAL ILE LEU SEQRES 11 A 728 GLY SER GLU ALA ALA GLN GLN HIS PRO GLU GLU VAL ARG SEQRES 12 A 728 GLY LEU TRP GLN THR CYS GLY GLU LEU MET PHE SER LEU SEQRES 13 A 728 GLU PRO ARG LEU ARG HIS LEU GLY LEU GLY LYS GLU GLY SEQRES 14 A 728 ILE THR THR TYR PHE SER GLY ASN CYS THR MET GLU ASP SEQRES 15 A 728 ALA LYS LEU ALA GLN ASP PHE LEU ASP SER GLN ASN LEU SEQRES 16 A 728 SER ALA TYR ASN THR ARG LEU PHE LYS GLU VAL ASP GLY SEQRES 17 A 728 GLU GLY LYS PRO TYR TYR GLU VAL ARG LEU ALA SER VAL SEQRES 18 A 728 LEU GLY SER GLU PRO SER LEU ASP SER GLU VAL THR SER SEQRES 19 A 728 LYS LEU LYS SER TYR GLU PHE ARG GLY SER PRO PHE GLN SEQRES 20 A 728 VAL THR ARG GLY ASP TYR ALA PRO ILE LEU GLN LYS VAL SEQRES 21 A 728 VAL GLU GLN LEU GLU LYS ALA LYS ALA TYR ALA ALA ASN SEQRES 22 A 728 SER HIS GLN GLY GLN MET LEU ALA GLN TYR ILE GLU SER SEQRES 23 A 728 PHE THR GLN GLY SER ILE GLU ALA HIS LYS ARG GLY SER SEQRES 24 A 728 ARG PHE TRP ILE GLN ASP LYS GLY PRO ILE VAL GLU SER SEQRES 25 A 728 TYR ILE GLY PHE ILE GLU SER TYR ARG ASP PRO PHE GLY SEQRES 26 A 728 SER ARG GLY GLU PHE GLU GLY PHE VAL ALA VAL VAL ASN SEQRES 27 A 728 LYS ALA MET SER ALA LYS PHE GLU ARG LEU VAL ALA SER SEQRES 28 A 728 ALA GLU GLN LEU LEU LYS GLU LEU PRO TRP PRO PRO THR SEQRES 29 A 728 PHE GLU LYS ASP LYS PHE LEU THR PRO ASP PHE THR SER SEQRES 30 A 728 LEU ASP VAL LEU THR PHE ALA GLY SER GLY ILE PRO ALA SEQRES 31 A 728 GLY ILE ASN ILE PRO ASN TYR ASP ASP LEU ARG GLN THR SEQRES 32 A 728 GLU GLY PHE LYS ASN VAL SER LEU GLY ASN VAL LEU ALA SEQRES 33 A 728 VAL ALA TYR ALA THR GLN ARG GLU LYS LEU THR PHE LEU SEQRES 34 A 728 GLU GLU ASP ASP LYS ASP LEU TYR ILE LEU TRP LYS GLY SEQRES 35 A 728 PRO SER PHE ASP VAL GLN VAL GLY LEU HIS GLU LEU LEU SEQRES 36 A 728 GLY HIS GLY SER GLY LYS LEU PHE VAL GLN ASP GLU LYS SEQRES 37 A 728 GLY ALA PHE ASN PHE ASP GLN GLU THR VAL ILE ASN PRO SEQRES 38 A 728 GLU THR GLY GLU GLN ILE GLN SER TRP TYR ARG SER GLY SEQRES 39 A 728 GLU THR TRP ASP SER LYS PHE SER THR ILE ALA SER SER SEQRES 40 A 728 TYR GLU GLU CYS ARG ALA GLU SER VAL GLY LEU TYR LEU SEQRES 41 A 728 CYS LEU HIS PRO GLN VAL LEU GLU ILE PHE GLY PHE GLU SEQRES 42 A 728 GLY ALA ASP ALA GLU ASP VAL ILE TYR VAL ASN TRP LEU SEQRES 43 A 728 ASN MET VAL ARG ALA GLY LEU LEU ALA LEU GLU PHE TYR SEQRES 44 A 728 THR PRO GLU ALA PHE ASN TRP ARG GLN ALA HIS MET GLN SEQRES 45 A 728 ALA ARG PHE VAL ILE LEU ARG VAL LEU LEU GLU ALA GLY SEQRES 46 A 728 GLU GLY LEU VAL THR ILE THR PRO THR THR GLY SER ASP SEQRES 47 A 728 GLY ARG PRO ASP ALA ARG VAL ARG LEU ASP ARG SER LYS SEQRES 48 A 728 ILE ARG SER VAL GLY LYS PRO ALA LEU GLU ARG PHE LEU SEQRES 49 A 728 ARG ARG LEU GLN VAL LEU LYS SER THR GLY ASP VAL ALA SEQRES 50 A 728 GLY GLY ARG ALA LEU TYR GLU GLY TYR ALA THR VAL THR SEQRES 51 A 728 ASP ALA PRO PRO GLU CYS PHE LEU THR LEU ARG ASP THR SEQRES 52 A 728 VAL LEU LEU ARG LYS GLU SER ARG LYS LEU ILE VAL GLN SEQRES 53 A 728 PRO ASN THR ARG LEU GLU GLY SER ASP VAL GLN LEU LEU SEQRES 54 A 728 GLU TYR GLU ALA SER ALA ALA GLY LEU ILE ARG SER PHE SEQRES 55 A 728 SER GLU ARG PHE PRO GLU ASP GLY PRO GLU LEU GLU GLU SEQRES 56 A 728 ILE LEU THR GLN LEU ALA THR ALA ASP ALA ARG PHE TRP HET ZN A1000 1 HET MG A 738 1 HET MG A 739 1 HET CL A 740 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 2 ZN ZN 2+ FORMUL 3 MG 2(MG 2+) FORMUL 5 CL CL 1- FORMUL 6 HOH *603(H2 O) HELIX 1 1 CYS A 19 LEU A 25 1 7 HELIX 2 2 SER A 27 LEU A 46 1 20 HELIX 3 3 LEU A 46 GLN A 51 1 6 HELIX 4 4 GLU A 55 GLN A 70 1 16 HELIX 5 5 ASP A 71 GLU A 82 1 12 HELIX 6 6 THR A 85 MET A 103 1 19 HELIX 7 7 PRO A 119 SER A 130 1 12 HELIX 8 8 SER A 130 HIS A 136 1 7 HELIX 9 9 HIS A 136 SER A 153 1 18 HELIX 10 10 GLU A 155 ARG A 159 5 5 HELIX 11 11 LEU A 163 GLY A 167 5 5 HELIX 12 12 THR A 177 GLN A 191 1 15 HELIX 13 13 VAL A 230 LEU A 234 5 5 HELIX 14 14 TYR A 251 ALA A 267 1 17 HELIX 15 15 ASN A 271 GLY A 288 1 18 HELIX 16 16 SER A 289 ASP A 303 1 15 HELIX 17 17 ASN A 336 SER A 349 1 14 HELIX 18 18 SER A 349 GLU A 356 1 8 HELIX 19 19 PRO A 360 GLU A 364 5 5 HELIX 20 20 TYR A 395 GLU A 402 1 8 HELIX 21 21 GLY A 410 ALA A 414 1 5 HELIX 22 22 GLN A 420 LEU A 424 5 5 HELIX 23 23 GLU A 428 LEU A 453 1 26 HELIX 24 24 THR A 494 PHE A 499 1 6 HELIX 25 25 ILE A 502 CYS A 519 1 18 HELIX 26 26 HIS A 521 GLY A 529 1 9 HELIX 27 27 GLU A 531 ALA A 553 1 23 HELIX 28 28 PRO A 559 PHE A 562 5 4 HELIX 29 29 GLN A 566 ALA A 582 1 17 HELIX 30 30 ARG A 607 ILE A 610 5 4 HELIX 31 31 VAL A 613 THR A 631 1 19 HELIX 32 32 ASP A 633 ALA A 645 1 13 HELIX 33 33 CYS A 654 ARG A 665 1 12 HELIX 34 34 SER A 692 GLU A 702 1 11 HELIX 35 35 ASP A 707 ALA A 723 1 17 HELIX 36 36 ARG A 724 TRP A 726 5 3 SHEET 1 A 2 VAL A 14 SER A 16 0 SHEET 2 A 2 LEU A 671 VAL A 673 1 O VAL A 673 N SER A 15 SHEET 1 B 4 THR A 198 VAL A 204 0 SHEET 2 B 4 PRO A 210 ALA A 217 -1 O TYR A 211 N GLU A 203 SHEET 3 B 4 SER A 242 ASP A 250 1 O GLN A 245 N VAL A 214 SHEET 4 B 4 SER A 236 PHE A 239 -1 N PHE A 239 O SER A 242 SHEET 1 C 5 VAL A 308 GLU A 316 0 SHEET 2 C 5 GLU A 327 VAL A 334 -1 O ALA A 333 N GLU A 309 SHEET 3 C 5 SER A 375 ALA A 382 -1 O ALA A 382 N GLY A 330 SHEET 4 C 5 LYS A 405 LEU A 409 1 O SER A 408 N LEU A 376 SHEET 5 C 5 GLY A 389 ILE A 392 -1 N ILE A 392 O LYS A 405 SHEET 1 D 2 TYR A 557 THR A 558 0 SHEET 2 D 2 ASN A 563 TRP A 564 -1 O ASN A 563 N THR A 558 SHEET 1 E 2 VAL A 587 THR A 593 0 SHEET 2 E 2 PRO A 599 LEU A 605 -1 O ASP A 600 N THR A 592 SHEET 1 F 2 ASN A 676 GLU A 680 0 SHEET 2 F 2 ASP A 683 LEU A 687 -1 O LEU A 687 N ASN A 676 LINK O GLY A 164 MG MG A 739 1555 1555 2.32 LINK O GLY A 167 MG MG A 739 1555 1555 2.22 LINK NE2 HIS A 450 ZN ZN A1000 1555 1555 2.06 LINK NE2 HIS A 455 ZN ZN A1000 1555 1555 2.04 LINK OE2 GLU A 508 ZN ZN A1000 1555 1555 2.06 LINK MG MG A 738 O HOH A 830 1555 1555 2.09 LINK MG MG A 738 O HOH A 868 1555 1555 2.17 LINK MG MG A 738 O HOH A 899 1555 1555 2.19 LINK MG MG A 738 O HOH A 900 1555 1555 2.28 LINK MG MG A 738 O HOH A 924 1555 1555 2.02 LINK MG MG A 738 O HOH A 948 1555 1555 2.07 LINK MG MG A 739 O HOH A 812 1555 1555 2.42 LINK MG MG A 739 O HOH A 998 1555 1555 2.41 LINK MG MG A 739 O HOH A1230 1555 1555 2.25 LINK O HOH A 874 ZN ZN A1000 1555 1555 2.39 LINK ZN ZN A1000 O HOH A1320 1555 1555 2.63 CISPEP 1 ILE A 392 PRO A 393 0 2.70 CISPEP 2 PRO A 651 PRO A 652 0 0.49 SITE 1 AC1 5 HIS A 450 HIS A 455 GLU A 508 HOH A 874 SITE 2 AC1 5 HOH A1320 SITE 1 AC2 6 HOH A 830 HOH A 868 HOH A 899 HOH A 900 SITE 2 AC2 6 HOH A 924 HOH A 948 SITE 1 AC3 5 GLY A 164 GLY A 167 HOH A 812 HOH A 998 SITE 2 AC3 5 HOH A1230 SITE 1 AC4 4 ASN A 478 GLN A 486 HOH A 769 HOH A1147 CRYST1 49.812 151.378 53.721 90.00 100.04 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020075 0.000000 0.003553 0.00000 SCALE2 0.000000 0.006606 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018904 0.00000