HEADER LYASE 16-JAN-09 3FVZ TITLE STRUCTURE OF PEPTIDYL-ALPHA-HYDROXYGLYCINE ALPHA-AMIDATING LYASE (PAL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PEPTIDYL-ALPHA-HYDROXYGLYCINE ALPHA-AMIDATING LYASE COMPND 5 CATALYTIC CORE; COMPND 6 SYNONYM: PAM, PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE, PHM, COMPND 7 PEPTIDYL-ALPHA-HYDROXYGLYCINE ALPHA-AMIDATING LYASE, COMPND 8 PEPTIDYLAMIDOGLYCOLATE LYASE, PAL; COMPND 9 EC: 4.3.2.5; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PAM; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: OVARY CELLS KEYWDS BETA PROPELLER, LYASE, PEPTIDE AMIDATION, HG-MAD, ZN-MAD, CLEAVAGE ON KEYWDS 2 PAIR OF BASIC RESIDUES, CYTOPLASMIC VESICLE, GLYCOPROTEIN, MEMBRANE, KEYWDS 3 METAL-BINDING, MONOOXYGENASE, MULTIFUNCTIONAL ENZYME, KEYWDS 4 OXIDOREDUCTASE, PHOSPHOPROTEIN, SULFATION, TRANSMEMBRANE, VITAMIN C EXPDTA X-RAY DIFFRACTION AUTHOR E.E.CHUFAN,M.DE,B.A.EIPPER,R.E.MAINS,L.M.AMZEL REVDAT 2 13-JUL-11 3FVZ 1 VERSN REVDAT 1 01-SEP-09 3FVZ 0 JRNL AUTH E.E.CHUFAN,M.DE,B.A.EIPPER,R.E.MAINS,L.M.AMZEL JRNL TITL AMIDATION OF BIOACTIVE PEPTIDES: THE STRUCTURE OF THE LYASE JRNL TITL 2 DOMAIN OF THE AMIDATING ENZYME. JRNL REF STRUCTURE V. 17 965 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19604476 JRNL DOI 10.1016/J.STR.2009.05.008 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 847 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1071 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2609 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.03000 REMARK 3 B22 (A**2) : 3.19000 REMARK 3 B33 (A**2) : -2.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.411 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.593 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2829 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3853 ; 1.215 ; 1.922 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 7.147 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;37.686 ;24.150 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 432 ;17.180 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.375 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 398 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2260 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1247 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1794 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 149 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.074 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.163 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1755 ; 0.328 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2783 ; 0.562 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 0.773 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1070 ; 1.112 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3FVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-09. REMARK 100 THE RCSB ID CODE IS RCSB051110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28241 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR WITH A WATER-COOLED REMARK 200 FLAT FIRST CRYSTAL AND A REMARK 200 SAGITTALLY FOCUSED SECOND CRYSTAL REMARK 200 POSITIONED FOR A FIXED EXIT BEAM REMARK 200 CONDITION REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16524 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 39.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 60.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49000 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH=4.8, 0.2MM REMARK 280 ZINC(II) ACETATE, 0.2MM IRON(III) CHLORIDE - 0.2ML MOTHER LIQUOR REMARK 280 IN RESERVOIR, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.08800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.73700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.52800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.73700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.08800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.52800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 495 -43.82 -26.43 REMARK 500 HIS A 496 -134.11 -102.10 REMARK 500 LEU A 513 71.33 -117.85 REMARK 500 HIS A 585 -105.40 -129.12 REMARK 500 VAL A 669 -64.01 -95.87 REMARK 500 SER A 679 -125.73 53.14 REMARK 500 VAL A 688 73.10 84.96 REMARK 500 LYS A 780 -150.80 59.59 REMARK 500 ASP A 783 -60.61 -132.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 653 TYR A 654 148.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 22 DISTANCE = 5.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 822 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 492 N REMARK 620 2 HIS A 493 N 70.2 REMARK 620 3 HIS A 493 ND1 157.3 87.0 REMARK 620 4 ASP A 498 OD2 86.2 153.0 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 823 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 520 O REMARK 620 2 LEU A 587 O 91.5 REMARK 620 3 ASP A 787 OD1 76.0 118.0 REMARK 620 4 HOH A 56 O 83.5 150.6 89.0 REMARK 620 5 HOH A 25 O 80.0 89.3 143.6 61.3 REMARK 620 6 HOH A 54 O 147.7 104.6 117.9 68.6 72.5 REMARK 620 7 GOL A 824 O1 123.9 77.5 62.7 128.8 152.4 87.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 821 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 585 NE2 REMARK 620 2 HIS A 690 NE2 97.9 REMARK 620 3 HIS A 786 NE2 95.0 103.7 REMARK 620 4 ACT A 1 OXT 130.0 121.9 102.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 821 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 822 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 823 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 824 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FW0 RELATED DB: PDB REMARK 900 THE SAME PROTEIN (PAL) COMPLEXED WITH SUBSTRATE. REMARK 900 RELATED ID: 1PHM RELATED DB: PDB REMARK 900 THIS PROTEIN (PHM) IS THE FIRST DOMAIN OF PEPTIDYL-GLYCINE REMARK 900 ALPHA-AMIDATING MONOOXYGENASE (PAM), IN WHICH THE SECOND REMARK 900 DOMAIN IS PAL, THE PROTEIN THAT IS BEING DEPOSITED. DBREF 3FVZ A 498 820 UNP P14925 AMD_RAT 498 820 SEQADV 3FVZ HIS A 492 UNP P14925 EXPRESSION TAG SEQADV 3FVZ HIS A 493 UNP P14925 EXPRESSION TAG SEQADV 3FVZ HIS A 494 UNP P14925 EXPRESSION TAG SEQADV 3FVZ HIS A 495 UNP P14925 EXPRESSION TAG SEQADV 3FVZ HIS A 496 UNP P14925 EXPRESSION TAG SEQADV 3FVZ HIS A 497 UNP P14925 EXPRESSION TAG SEQRES 1 A 329 HIS HIS HIS HIS HIS HIS ASP PHE HIS VAL GLU GLU GLU SEQRES 2 A 329 LEU ASP TRP PRO GLY VAL TYR LEU LEU PRO GLY GLN VAL SEQRES 3 A 329 SER GLY VAL ALA LEU ASP SER LYS ASN ASN LEU VAL ILE SEQRES 4 A 329 PHE HIS ARG GLY ASP HIS VAL TRP ASP GLY ASN SER PHE SEQRES 5 A 329 ASP SER LYS PHE VAL TYR GLN GLN ARG GLY LEU GLY PRO SEQRES 6 A 329 ILE GLU GLU ASP THR ILE LEU VAL ILE ASP PRO ASN ASN SEQRES 7 A 329 ALA GLU ILE LEU GLN SER SER GLY LYS ASN LEU PHE TYR SEQRES 8 A 329 LEU PRO HIS GLY LEU SER ILE ASP THR ASP GLY ASN TYR SEQRES 9 A 329 TRP VAL THR ASP VAL ALA LEU HIS GLN VAL PHE LYS LEU SEQRES 10 A 329 ASP PRO HIS SER LYS GLU GLY PRO LEU LEU ILE LEU GLY SEQRES 11 A 329 ARG SER MET GLN PRO GLY SER ASP GLN ASN HIS PHE CYS SEQRES 12 A 329 GLN PRO THR ASP VAL ALA VAL GLU PRO SER THR GLY ALA SEQRES 13 A 329 VAL PHE VAL SER ASP GLY TYR CYS ASN SER ARG ILE VAL SEQRES 14 A 329 GLN PHE SER PRO SER GLY LYS PHE VAL THR GLN TRP GLY SEQRES 15 A 329 GLU GLU SER SER GLY SER SER PRO ARG PRO GLY GLN PHE SEQRES 16 A 329 SER VAL PRO HIS SER LEU ALA LEU VAL PRO HIS LEU ASP SEQRES 17 A 329 GLN LEU CYS VAL ALA ASP ARG GLU ASN GLY ARG ILE GLN SEQRES 18 A 329 CYS PHE LYS THR ASP THR LYS GLU PHE VAL ARG GLU ILE SEQRES 19 A 329 LYS HIS ALA SER PHE GLY ARG ASN VAL PHE ALA ILE SER SEQRES 20 A 329 TYR ILE PRO GLY PHE LEU PHE ALA VAL ASN GLY LYS PRO SEQRES 21 A 329 TYR PHE GLY ASP GLN GLU PRO VAL GLN GLY PHE VAL MET SEQRES 22 A 329 ASN PHE SER SER GLY GLU ILE ILE ASP VAL PHE LYS PRO SEQRES 23 A 329 VAL ARG LYS HIS PHE ASP MET PRO HIS ASP ILE VAL ALA SEQRES 24 A 329 SER GLU ASP GLY THR VAL TYR ILE GLY ASP ALA HIS THR SEQRES 25 A 329 ASN THR VAL TRP LYS PHE THR LEU THR GLU LYS MET GLU SEQRES 26 A 329 HIS ARG SER VAL HET ZN A 821 1 HET FE A 822 1 HET CA A 823 1 HET ACT A 1 4 HET GOL A 824 6 HET GOL A 2 6 HETNAM ZN ZINC ION HETNAM FE FE (III) ION HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 FE FE 3+ FORMUL 4 CA CA 2+ FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 HOH *148(H2 O) HELIX 1 1 TRP A 507 LEU A 512 5 6 HELIX 2 2 GLN A 551 GLY A 555 5 5 SHEET 1 A 4 PHE A 499 GLU A 503 0 SHEET 2 A 4 VAL A 806 GLU A 813 -1 O THR A 810 N GLU A 502 SHEET 3 A 4 THR A 795 ASP A 800 -1 N VAL A 796 O PHE A 809 SHEET 4 A 4 PRO A 785 ALA A 790 -1 N HIS A 786 O GLY A 799 SHEET 1 B 4 VAL A 517 LEU A 522 0 SHEET 2 B 4 LEU A 528 HIS A 532 -1 O VAL A 529 N ALA A 521 SHEET 3 B 4 ILE A 562 ILE A 565 -1 O ILE A 565 N LEU A 528 SHEET 4 B 4 ILE A 572 SER A 576 -1 O SER A 576 N ILE A 562 SHEET 1 C 4 PRO A 584 ILE A 589 0 SHEET 2 C 4 TYR A 595 ASP A 599 -1 O TRP A 596 N SER A 588 SHEET 3 C 4 GLN A 604 LEU A 608 -1 O LEU A 608 N TYR A 595 SHEET 4 C 4 LEU A 618 LEU A 620 -1 O LEU A 620 N VAL A 605 SHEET 1 D 4 PRO A 636 VAL A 641 0 SHEET 2 D 4 VAL A 648 ASP A 652 -1 O PHE A 649 N ALA A 640 SHEET 3 D 4 ARG A 658 PHE A 662 -1 O VAL A 660 N VAL A 650 SHEET 4 D 4 PHE A 668 TRP A 672 -1 O THR A 670 N GLN A 661 SHEET 1 E 2 GLU A 674 GLU A 675 0 SHEET 2 E 2 GLN A 685 PHE A 686 1 O PHE A 686 N GLU A 674 SHEET 1 F 4 ALA A 693 VAL A 695 0 SHEET 2 F 4 GLN A 700 ASP A 705 -1 O CYS A 702 N ALA A 693 SHEET 3 F 4 ARG A 710 LYS A 715 -1 O ARG A 710 N ASP A 705 SHEET 4 F 4 PHE A 721 ILE A 725 -1 O ILE A 725 N ILE A 711 SHEET 1 G 4 VAL A 734 ILE A 740 0 SHEET 2 G 4 PHE A 743 ASN A 748 -1 O PHE A 745 N SER A 738 SHEET 3 G 4 GLY A 761 ASN A 765 -1 O MET A 764 N LEU A 744 SHEET 4 G 4 ILE A 771 PHE A 775 -1 O ILE A 772 N VAL A 763 SSBOND 1 CYS A 634 CYS A 655 1555 1555 2.04 LINK N HIS A 492 FE FE A 822 1555 1555 2.35 LINK N HIS A 493 FE FE A 822 1555 1555 2.44 LINK ND1 HIS A 493 FE FE A 822 1555 1555 1.90 LINK OD2 ASP A 498 FE FE A 822 1555 1555 2.13 LINK O VAL A 520 CA CA A 823 1555 1555 2.51 LINK NE2 HIS A 585 ZN ZN A 821 1555 1555 2.06 LINK O LEU A 587 CA CA A 823 1555 1555 2.31 LINK NE2 HIS A 690 ZN ZN A 821 1555 1555 2.14 LINK NE2 HIS A 786 ZN ZN A 821 1555 1555 2.09 LINK OD1 ASP A 787 CA CA A 823 1555 1555 2.45 LINK ZN ZN A 821 OXT ACT A 1 1555 1555 2.02 LINK CA CA A 823 O HOH A 56 1555 1555 2.71 LINK CA CA A 823 O HOH A 25 1555 1555 2.48 LINK CA CA A 823 O HOH A 54 1555 1555 2.64 LINK CA CA A 823 O1 GOL A 824 1555 1555 2.75 SITE 1 AC1 5 ACT A 1 HIS A 585 TYR A 654 HIS A 690 SITE 2 AC1 5 HIS A 786 SITE 1 AC2 4 HIS A 492 HIS A 493 ASP A 498 ILE A 572 SITE 1 AC3 7 HOH A 25 HOH A 54 HOH A 56 VAL A 520 SITE 2 AC3 7 LEU A 587 ASP A 787 GOL A 824 SITE 1 AC4 9 HOH A 75 ARG A 533 TRP A 538 HIS A 585 SITE 2 AC4 9 TYR A 654 HIS A 690 MET A 784 HIS A 786 SITE 3 AC4 9 ZN A 821 SITE 1 AC5 8 SER A 518 GLY A 586 LEU A 587 ASP A 638 SITE 2 AC5 8 HIS A 690 HIS A 786 ASP A 787 CA A 823 SITE 1 AC6 7 HOH A 74 HOH A 112 VAL A 778 ARG A 779 SITE 2 AC6 7 LYS A 780 GLU A 792 ASP A 793 CRYST1 52.176 75.056 97.474 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019166 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010259 0.00000