HEADER LYASE 16-JAN-09 3FW3 TITLE CRYSTAL STRUCTURE OF SOLUBLE DOMAIN OF CA4 IN COMPLEX WITH DORZOLAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SOLUBLE DOMAIN; COMPND 5 SYNONYM: CARBONIC ANHYDRASE IV, CA-IV, CARBONATE DEHYDRATASE IV; COMPND 6 EC: 4.2.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURE-BASED DRUG DESIGN. SMALL MOLECULE COMPLEX. CO-CRYSTAL, CELL KEYWDS 2 MEMBRANE, DISEASE MUTATION, GLYCOPROTEIN, GPI-ANCHOR, LIPOPROTEIN, KEYWDS 3 LYASE, MEMBRANE, METAL-BINDING, POLYMORPHISM, RETINITIS PIGMENTOSA, KEYWDS 4 SENSORY TRANSDUCTION, VISION, ZINC EXPDTA X-RAY DIFFRACTION AUTHOR S.E.GREASLEY,R.A.A.FERRE,R.PAZ,J.WICKERSHAM REVDAT 5 06-NOV-24 3FW3 1 REMARK REVDAT 4 06-SEP-23 3FW3 1 HETSYN REVDAT 3 29-JUL-20 3FW3 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 12-MAY-10 3FW3 1 JRNL REVDAT 1 01-DEC-09 3FW3 0 JRNL AUTH W.VERNIER,W.CHONG,D.REWOLINSKI,S.GREASLEY,T.PAULY,M.SHAW, JRNL AUTH 2 D.DINH,R.A.FERRE,S.NUKUI,M.ORNELAS,E.REYNER JRNL TITL THIOETHER BENZENESULFONAMIDE INHIBITORS OF CARBONIC JRNL TITL 2 ANHYDRASES II AND IV: STRUCTURE-BASED DRUG DESIGN, JRNL TITL 3 SYNTHESIS, AND BIOLOGICAL EVALUATION. JRNL REF BIOORG.MED.CHEM. V. 18 3307 2010 JRNL REFN ISSN 0968-0896 JRNL PMID 20363633 JRNL DOI 10.1016/J.BMC.2010.03.014 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 50026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2661 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3477 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3962 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 264 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.207 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4122 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3626 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5579 ; 1.566 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8473 ; 0.835 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 6.672 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 618 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4452 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 765 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 649 ; 0.272 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4045 ; 0.243 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2263 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 183 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.234 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2510 ; 0.935 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4044 ; 1.677 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1612 ; 2.526 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1535 ; 4.176 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FW3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051114. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52706 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 29.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.810 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZNC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M NA ACETATE, 0.20M REMARK 280 AMMONIUM SULFATE, 3% GLUCOSE., PH 4.4, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.41300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 TYR A 11E REMARK 465 PRO A 11F REMARK 465 GLY A 126A REMARK 465 THR A 126B REMARK 465 SER A 126C REMARK 465 ARG A 126D REMARK 465 ASN A 126E REMARK 465 VAL A 126F REMARK 465 LYS A 126G REMARK 465 GLU A 126H REMARK 465 ALA A 126I REMARK 465 GLN A 126J REMARK 465 ASP A 126K REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 465 LYS B 125A REMARK 465 GLY B 125B REMARK 465 THR B 125C REMARK 465 SER B 125D REMARK 465 ARG B 125E REMARK 465 ASN B 125F REMARK 465 VAL B 125G REMARK 465 LYS B 125H REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11A CG CD OE1 OE2 REMARK 470 ASN A 11D CG OD1 ND2 REMARK 470 LYS A 42 CD CE NZ REMARK 470 ARG A 46 NE CZ NH1 NH2 REMARK 470 LYS A 53 CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 LYS A 169 NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 GLU A 187B CD OE1 OE2 REMARK 470 LYS A 188 CE NZ REMARK 470 ARG A 189A CD NE CZ NH1 NH2 REMARK 470 GLU B 8 CD OE1 OE2 REMARK 470 GLU B 11A CD OE1 OE2 REMARK 470 ASN B 11D CG OD1 ND2 REMARK 470 TYR B 11E CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 25 CE NZ REMARK 470 LYS B 39 CD CE NZ REMARK 470 LYS B 42 CD CE NZ REMARK 470 LYS B 43 CE NZ REMARK 470 LYS B 53 CE NZ REMARK 470 GLU B 112 CD OE1 OE2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 GLN B 135 CD OE1 NE2 REMARK 470 GLN B 152 CG CD OE1 NE2 REMARK 470 GLU B 187B CG CD OE1 OE2 REMARK 470 LYS B 188 CD CE NZ REMARK 470 ARG B 189A NE CZ NH1 NH2 REMARK 470 GLU B 221 CD OE1 OE2 REMARK 470 LYS B 233 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 21 O HOH A 624 2.05 REMARK 500 O GLY B 151 O HOH B 650 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 16 C GLY A 20 N 0.253 REMARK 500 LYS A 233 C GLU A 236 N 0.284 REMARK 500 ASN B 72 C LYS B 76 N 0.172 REMARK 500 LYS B 233 C GLU B 236 N 0.181 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 243 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 103 22.85 -142.08 REMARK 500 GLU A 171 -16.36 84.87 REMARK 500 LYS A 206 20.09 -141.03 REMARK 500 ASN B 11D 50.51 -100.52 REMARK 500 SER B 98 -158.54 -130.19 REMARK 500 LYS B 103 26.93 -143.10 REMARK 500 ASP B 139 33.79 -142.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN B 72 -14.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLC A 304 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HIS A 96 NE2 105.7 REMARK 620 3 HIS A 119 ND1 112.6 98.2 REMARK 620 4 ETS A 302 N13 111.9 112.3 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 94 NE2 REMARK 620 2 HIS B 96 NE2 109.3 REMARK 620 3 HIS B 119 ND1 112.2 93.9 REMARK 620 4 ETS B 303 N13 104.9 115.3 120.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F7B RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH SMALL MOLECULE. REMARK 900 RELATED ID: 3F7U RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH SMALL MOLECULE. DBREF 3FW3 A 1 259 UNP P22748 CAH4_HUMAN 19 284 DBREF 3FW3 B 1 259 UNP P22748 CAH4_HUMAN 19 284 SEQRES 1 A 266 ALA GLU SER HIS TRP CYS TYR GLU VAL GLN ALA GLU SER SEQRES 2 A 266 SER ASN TYR PRO CYS LEU VAL PRO VAL LYS TRP GLY GLY SEQRES 3 A 266 ASN CYS GLN LYS ASP ARG GLN SER PRO ILE ASN ILE VAL SEQRES 4 A 266 THR THR LYS ALA LYS VAL ASP LYS LYS LEU GLY ARG PHE SEQRES 5 A 266 PHE PHE SER GLY TYR ASP LYS LYS GLN THR TRP THR VAL SEQRES 6 A 266 GLN ASN ASN GLY HIS SER VAL MET MET LEU LEU GLU ASN SEQRES 7 A 266 LYS ALA SER ILE SER GLY GLY GLY LEU PRO ALA PRO TYR SEQRES 8 A 266 GLN ALA LYS GLN LEU HIS LEU HIS TRP SER ASP LEU PRO SEQRES 9 A 266 TYR LYS GLY SER GLU HIS SER LEU ASP GLY GLU HIS PHE SEQRES 10 A 266 ALA MET GLU MET HIS ILE VAL HIS GLU LYS GLU LYS GLY SEQRES 11 A 266 THR SER ARG ASN VAL LYS GLU ALA GLN ASP PRO GLU ASP SEQRES 12 A 266 GLU ILE ALA VAL LEU ALA PHE LEU VAL GLU ALA GLY THR SEQRES 13 A 266 GLN VAL ASN GLU GLY PHE GLN PRO LEU VAL GLU ALA LEU SEQRES 14 A 266 SER ASN ILE PRO LYS PRO GLU MET SER THR THR MET ALA SEQRES 15 A 266 GLU SER SER LEU LEU ASP LEU LEU PRO LYS GLU GLU LYS SEQRES 16 A 266 LEU ARG HIS TYR PHE ARG TYR LEU GLY SER LEU THR THR SEQRES 17 A 266 PRO THR CYS ASP GLU LYS VAL VAL TRP THR VAL PHE ARG SEQRES 18 A 266 GLU PRO ILE GLN LEU HIS ARG GLU GLN ILE LEU ALA PHE SEQRES 19 A 266 SER GLN LYS LEU TYR TYR ASP LYS GLU GLN THR VAL SER SEQRES 20 A 266 MET LYS ASP ASN VAL ARG PRO LEU GLN GLN LEU GLY GLN SEQRES 21 A 266 ARG THR VAL ILE LYS SER SEQRES 1 B 266 ALA GLU SER HIS TRP CYS TYR GLU VAL GLN ALA GLU SER SEQRES 2 B 266 SER ASN TYR PRO CYS LEU VAL PRO VAL LYS TRP GLY GLY SEQRES 3 B 266 ASN CYS GLN LYS ASP ARG GLN SER PRO ILE ASN ILE VAL SEQRES 4 B 266 THR THR LYS ALA LYS VAL ASP LYS LYS LEU GLY ARG PHE SEQRES 5 B 266 PHE PHE SER GLY TYR ASP LYS LYS GLN THR TRP THR VAL SEQRES 6 B 266 GLN ASN ASN GLY HIS SER VAL MET MET LEU LEU GLU ASN SEQRES 7 B 266 LYS ALA SER ILE SER GLY GLY GLY LEU PRO ALA PRO TYR SEQRES 8 B 266 GLN ALA LYS GLN LEU HIS LEU HIS TRP SER ASP LEU PRO SEQRES 9 B 266 TYR LYS GLY SER GLU HIS SER LEU ASP GLY GLU HIS PHE SEQRES 10 B 266 ALA MET GLU MET HIS ILE VAL HIS GLU LYS GLU LYS GLY SEQRES 11 B 266 THR SER ARG ASN VAL LYS GLU ALA GLN ASP PRO GLU ASP SEQRES 12 B 266 GLU ILE ALA VAL LEU ALA PHE LEU VAL GLU ALA GLY THR SEQRES 13 B 266 GLN VAL ASN GLU GLY PHE GLN PRO LEU VAL GLU ALA LEU SEQRES 14 B 266 SER ASN ILE PRO LYS PRO GLU MET SER THR THR MET ALA SEQRES 15 B 266 GLU SER SER LEU LEU ASP LEU LEU PRO LYS GLU GLU LYS SEQRES 16 B 266 LEU ARG HIS TYR PHE ARG TYR LEU GLY SER LEU THR THR SEQRES 17 B 266 PRO THR CYS ASP GLU LYS VAL VAL TRP THR VAL PHE ARG SEQRES 18 B 266 GLU PRO ILE GLN LEU HIS ARG GLU GLN ILE LEU ALA PHE SEQRES 19 B 266 SER GLN LYS LEU TYR TYR ASP LYS GLU GLN THR VAL SER SEQRES 20 B 266 MET LYS ASP ASN VAL ARG PRO LEU GLN GLN LEU GLY GLN SEQRES 21 B 266 ARG THR VAL ILE LYS SER HET ZN A 300 1 HET ETS A 302 19 HET GLC A 304 11 HET SO4 A 305 5 HET ZN B 301 1 HET ETS B 303 19 HET SO4 B 306 5 HETNAM ZN ZINC ION HETNAM ETS (4S-TRANS)-4-(ETHYLAMINO)-5,6-DIHYDRO-6-METHYL-4H- HETNAM 2 ETS THIENO(2,3-B)THIOPYRAN-2-SULFONAMIDE-7,7-DIOXIDE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN ETS DORZOLAMIDE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ETS 2(C10 H16 N2 O4 S3) FORMUL 5 GLC C6 H12 O6 FORMUL 6 SO4 2(O4 S 2-) FORMUL 10 HOH *264(H2 O) HELIX 1 1 TYR A 7 GLU A 11A 1 6 HELIX 2 2 VAL A 12 TRP A 16 5 5 HELIX 3 3 VAL A 34 ALA A 38 5 5 HELIX 4 4 ASN A 154 GLY A 156 5 3 HELIX 5 5 PHE A 157 LEU A 164 1 8 HELIX 6 6 SER A 165 ILE A 167 5 3 HELIX 7 7 LEU A 181 LEU A 185 5 5 HELIX 8 8 LYS A 187 ARG A 189A 5 6 HELIX 9 9 ARG A 220 LEU A 229 1 11 HELIX 10 10 GLU B 8 SER B 11C 1 7 HELIX 11 11 VAL B 12 TRP B 16 5 5 HELIX 12 12 VAL B 34 ALA B 38 5 5 HELIX 13 13 ASN B 154 GLY B 156 5 3 HELIX 14 14 PHE B 157 LEU B 164 1 8 HELIX 15 15 SER B 165 ILE B 167 5 3 HELIX 16 16 LEU B 181 LEU B 185 5 5 HELIX 17 17 LYS B 187 ARG B 189A 5 6 HELIX 18 18 ARG B 220 LEU B 229 1 11 SHEET 1 A 2 ASN A 32 ILE A 33 0 SHEET 2 A 2 SER A 108 LEU A 109 1 O SER A 108 N ILE A 33 SHEET 1 B10 LYS A 39 VAL A 40 0 SHEET 2 B10 ILE A 257 LYS A 258 1 O LYS A 258 N LYS A 39 SHEET 3 B10 TYR A 191 GLY A 196 -1 N ARG A 193 O ILE A 257 SHEET 4 B10 VAL A 207 PHE A 212 -1 O TRP A 209 N TYR A 194 SHEET 5 B10 ILE A 141 GLY A 151 1 N ILE A 141 O VAL A 208 SHEET 6 B10 MET A 116 LYS A 124 -1 N MET A 118 O PHE A 146 SHEET 7 B10 TYR A 88 TRP A 97 -1 N HIS A 94 O HIS A 119 SHEET 8 B10 VAL A 66 LEU A 69 -1 N MET A 68 O LEU A 93 SHEET 9 B10 THR A 58 ASN A 61 -1 N THR A 58 O LEU A 69 SHEET 10 B10 SER A 173 THR A 175 -1 O THR A 174 N VAL A 59 SHEET 1 C 6 PHE A 47 SER A 50 0 SHEET 2 C 6 SER A 78 GLY A 81 -1 O SER A 80 N PHE A 48 SHEET 3 C 6 TYR A 88 TRP A 97 -1 O TYR A 88 N ILE A 79 SHEET 4 C 6 MET A 116 LYS A 124 -1 O HIS A 119 N HIS A 94 SHEET 5 C 6 ILE A 141 GLY A 151 -1 O PHE A 146 N MET A 118 SHEET 6 C 6 ILE A 216 HIS A 219 1 O ILE A 216 N LEU A 147 SHEET 1 D 2 ASN B 32 ILE B 33 0 SHEET 2 D 2 SER B 108 LEU B 109 1 O SER B 108 N ILE B 33 SHEET 1 E10 LYS B 39 VAL B 40 0 SHEET 2 E10 ILE B 257 LYS B 258 1 O LYS B 258 N LYS B 39 SHEET 3 E10 TYR B 191 GLY B 196 -1 N ARG B 193 O ILE B 257 SHEET 4 E10 VAL B 207 PHE B 212 -1 O TRP B 209 N TYR B 194 SHEET 5 E10 ILE B 141 GLY B 151 1 N ALA B 145 O THR B 210 SHEET 6 E10 MET B 116 LYS B 124 -1 N MET B 118 O PHE B 146 SHEET 7 E10 TYR B 88 TRP B 97 -1 N LYS B 91 O VAL B 121 SHEET 8 E10 VAL B 66 LEU B 69 -1 N MET B 68 O LEU B 93 SHEET 9 E10 THR B 58 ASN B 61 -1 N GLN B 60 O MET B 67 SHEET 10 E10 SER B 173 THR B 175 -1 O THR B 174 N VAL B 59 SHEET 1 F 6 PHE B 47 SER B 50 0 SHEET 2 F 6 SER B 78 GLY B 81 -1 O SER B 80 N PHE B 48 SHEET 3 F 6 TYR B 88 TRP B 97 -1 O TYR B 88 N ILE B 79 SHEET 4 F 6 MET B 116 LYS B 124 -1 O VAL B 121 N LYS B 91 SHEET 5 F 6 ILE B 141 GLY B 151 -1 O PHE B 146 N MET B 118 SHEET 6 F 6 ILE B 216 HIS B 219 1 O ILE B 216 N GLU B 149 SSBOND 1 CYS A 6 CYS A 11G 1555 1555 2.09 SSBOND 2 CYS A 23 CYS A 203 1555 1555 2.04 SSBOND 3 CYS B 6 CYS B 11G 1555 1555 2.09 SSBOND 4 CYS B 23 CYS B 203 1555 1555 2.06 LINK NE2 HIS A 94 ZN ZN A 300 1555 1555 2.04 LINK NE2 HIS A 96 ZN ZN A 300 1555 1555 2.08 LINK ND1 HIS A 119 ZN ZN A 300 1555 1555 2.07 LINK ZN ZN A 300 N13 ETS A 302 1555 1555 2.03 LINK NE2 HIS B 94 ZN ZN B 301 1555 1555 2.06 LINK NE2 HIS B 96 ZN ZN B 301 1555 1555 2.06 LINK ND1 HIS B 119 ZN ZN B 301 1555 1555 2.09 LINK ZN ZN B 301 N13 ETS B 303 1555 1555 2.05 CISPEP 1 SER A 29 PRO A 30 0 2.44 CISPEP 2 PRO A 201 THR A 202 0 8.67 CISPEP 3 SER B 29 PRO B 30 0 1.80 CISPEP 4 PRO B 201 THR B 202 0 7.70 CRYST1 49.991 70.826 71.774 90.00 91.91 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020004 0.000000 0.000666 0.00000 SCALE2 0.000000 0.014119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013940 0.00000