HEADER TRANSCRIPTION 19-JAN-09 3FWS TITLE CRYSTAL STRUCTURE OF THE CBS DOMAINS FROM THE BACILLUS SUBTILIS CCPN TITLE 2 REPRESSOR COMPLEXED WITH APPNP, PHOSPHATE AND MAGNESIUM IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YQZB PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CBS DOMAIN, REGULATORY DOMAIN OF THE TRANSCRIPTION FACTOR COMPND 5 CCPN, UNP RESIDUES 63-212; COMPND 6 SYNONYM: CENTRAL GLYCOLYTIC GENE REGULATOR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YQZB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS CBS DOMAIN DIMER, METABOLISM REGULATOR, CENTRAL GLYCOLYTIC GENE KEYWDS 2 REGULATOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.CHAIX,S.AROLD,F.HOH,N.DECLERCK REVDAT 3 01-NOV-23 3FWS 1 REMARK SEQADV REVDAT 2 13-JUL-11 3FWS 1 VERSN REVDAT 1 26-JAN-10 3FWS 0 JRNL AUTH D.CHAIX,K.DE GUILLEN,D.L.COQ,F.HOH,C.ROUMESTAND,S.AYMERICH, JRNL AUTH 2 S.T.AROLD,N.DECLERCK JRNL TITL LIGAND RECOGNITION BY THE ENERGY SENSOR DOMAIN OF THE CCPN JRNL TITL 2 REPRESSOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0062 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 934 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1280 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : 0.75000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.222 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.219 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2383 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3237 ; 2.366 ; 2.025 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 289 ; 7.401 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;41.627 ;24.945 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 461 ;18.160 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.746 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.202 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1640 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1449 ; 1.145 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2384 ; 1.941 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 934 ; 3.349 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 853 ; 5.132 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3548 34.8932 39.1421 REMARK 3 T TENSOR REMARK 3 T11: -0.0714 T22: -0.0816 REMARK 3 T33: -0.1247 T12: -0.0336 REMARK 3 T13: -0.0200 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 4.2263 L22: 1.7441 REMARK 3 L33: 1.5828 L12: -0.9693 REMARK 3 L13: 0.1341 L23: 0.1318 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: -0.1277 S13: -0.3876 REMARK 3 S21: -0.0880 S22: -0.0343 S23: 0.2076 REMARK 3 S31: 0.1277 S32: -0.1270 S33: -0.0203 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6413 48.7543 35.1718 REMARK 3 T TENSOR REMARK 3 T11: -0.1291 T22: -0.0880 REMARK 3 T33: -0.1711 T12: -0.0175 REMARK 3 T13: 0.0009 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.8097 L22: 3.4502 REMARK 3 L33: 1.1597 L12: -1.8419 REMARK 3 L13: 0.0334 L23: -0.0227 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: 0.0045 S13: 0.1286 REMARK 3 S21: -0.0455 S22: 0.0298 S23: -0.1803 REMARK 3 S31: -0.0146 S32: 0.0822 S33: -0.0024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 78 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97549 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18288 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 51.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : 0.41700 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: PDB ENTRY 3FV6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 2000 MME, 0.1M HEPES, 8MG/ML REMARK 280 PROTEIN; DROPS 1+1 MICROLITER, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.19350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.19350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.01250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.98450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.01250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.98450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.19350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.01250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.98450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.19350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.01250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.98450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 62 REMARK 465 THR A 63 REMARK 465 GLY A 64 REMARK 465 LYS A 65 REMARK 465 THR A 66 REMARK 465 GLY A 67 REMARK 465 LEU A 213 REMARK 465 GLN A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 MET B 62 REMARK 465 THR B 63 REMARK 465 GLU B 210 REMARK 465 ILE B 211 REMARK 465 LEU B 212 REMARK 465 LEU B 213 REMARK 465 GLN B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 HIS B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2G ANP A 221 MG MG A 224 1.67 REMARK 500 O2 PO4 A 222 O HOH A 258 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 136 -60.12 -144.15 REMARK 500 GLN A 137 104.78 90.35 REMARK 500 ASN A 153 51.50 -97.41 REMARK 500 ASP A 185 34.95 -76.36 REMARK 500 ASN B 153 47.48 -81.63 REMARK 500 GLU B 208 -63.06 -93.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 211 LEU A 212 133.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 223 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FV6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CBS DOMAINS FROM THE BACILLUS SUBTILIS REMARK 900 CCPN REPRESSOR REMARK 900 RELATED ID: 3FWR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CBS DOMAINS FROM THE BACILLUS SUBTILIS REMARK 900 CCPN REPRESSOR COMPLEXED WITH ADP DBREF 3FWS A 63 212 UNP O34994 O34994_BACSU 63 212 DBREF 3FWS B 63 212 UNP O34994 O34994_BACSU 63 212 SEQADV 3FWS MET A 62 UNP O34994 EXPRESSION TAG SEQADV 3FWS LEU A 213 UNP O34994 EXPRESSION TAG SEQADV 3FWS GLN A 214 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS A 215 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS A 216 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS A 217 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS A 218 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS A 219 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS A 220 UNP O34994 EXPRESSION TAG SEQADV 3FWS MET B 62 UNP O34994 EXPRESSION TAG SEQADV 3FWS LEU B 213 UNP O34994 EXPRESSION TAG SEQADV 3FWS GLN B 214 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS B 215 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS B 216 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS B 217 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS B 218 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS B 219 UNP O34994 EXPRESSION TAG SEQADV 3FWS HIS B 220 UNP O34994 EXPRESSION TAG SEQRES 1 A 159 MET THR GLY LYS THR GLY THR GLN LEU LEU ALA ASP LYS SEQRES 2 A 159 LEU LYS LYS LEU GLN VAL LYS ASP PHE GLN SER ILE PRO SEQRES 3 A 159 VAL VAL ILE HIS GLU ASN VAL SER VAL TYR ASP ALA ILE SEQRES 4 A 159 CYS THR MET PHE LEU GLU ASP VAL GLY THR LEU PHE VAL SEQRES 5 A 159 VAL ASP ARG ASP ALA VAL LEU VAL GLY VAL LEU SER ARG SEQRES 6 A 159 LYS ASP LEU LEU ARG ALA SER ILE GLY GLN GLN GLU LEU SEQRES 7 A 159 THR SER VAL PRO VAL HIS ILE ILE MET THR ARG MET PRO SEQRES 8 A 159 ASN ILE THR VAL CYS ARG ARG GLU ASP TYR VAL MET ASP SEQRES 9 A 159 ILE ALA LYS HIS LEU ILE GLU LYS GLN ILE ASP ALA LEU SEQRES 10 A 159 PRO VAL ILE LYS ASP THR ASP LYS GLY PHE GLU VAL ILE SEQRES 11 A 159 GLY ARG VAL THR LYS THR ASN MET THR LYS ILE LEU VAL SEQRES 12 A 159 SER LEU SER GLU ASN GLU ILE LEU LEU GLN HIS HIS HIS SEQRES 13 A 159 HIS HIS HIS SEQRES 1 B 159 MET THR GLY LYS THR GLY THR GLN LEU LEU ALA ASP LYS SEQRES 2 B 159 LEU LYS LYS LEU GLN VAL LYS ASP PHE GLN SER ILE PRO SEQRES 3 B 159 VAL VAL ILE HIS GLU ASN VAL SER VAL TYR ASP ALA ILE SEQRES 4 B 159 CYS THR MET PHE LEU GLU ASP VAL GLY THR LEU PHE VAL SEQRES 5 B 159 VAL ASP ARG ASP ALA VAL LEU VAL GLY VAL LEU SER ARG SEQRES 6 B 159 LYS ASP LEU LEU ARG ALA SER ILE GLY GLN GLN GLU LEU SEQRES 7 B 159 THR SER VAL PRO VAL HIS ILE ILE MET THR ARG MET PRO SEQRES 8 B 159 ASN ILE THR VAL CYS ARG ARG GLU ASP TYR VAL MET ASP SEQRES 9 B 159 ILE ALA LYS HIS LEU ILE GLU LYS GLN ILE ASP ALA LEU SEQRES 10 B 159 PRO VAL ILE LYS ASP THR ASP LYS GLY PHE GLU VAL ILE SEQRES 11 B 159 GLY ARG VAL THR LYS THR ASN MET THR LYS ILE LEU VAL SEQRES 12 B 159 SER LEU SER GLU ASN GLU ILE LEU LEU GLN HIS HIS HIS SEQRES 13 B 159 HIS HIS HIS HET ANP A 221 31 HET PO4 A 222 5 HET MG A 223 1 HET MG A 224 1 HET ANP B 221 31 HET PO4 B 222 5 HET MG B 223 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 MG 3(MG 2+) FORMUL 10 HOH *86(H2 O) HELIX 1 1 THR A 68 LYS A 76 1 9 HELIX 2 2 LYS A 77 LEU A 78 5 2 HELIX 3 3 GLN A 79 GLN A 84 5 6 HELIX 4 4 SER A 95 ASP A 107 1 13 HELIX 5 5 ARG A 126 ILE A 134 1 9 HELIX 6 6 PRO A 143 ILE A 147 5 5 HELIX 7 7 TYR A 162 GLN A 174 1 13 HELIX 8 8 LYS A 196 GLU A 208 1 13 HELIX 9 9 THR B 66 LEU B 78 1 13 HELIX 10 10 GLN B 79 PHE B 83 5 5 HELIX 11 11 SER B 95 ASP B 107 1 13 HELIX 12 12 ARG B 126 GLY B 135 1 10 HELIX 13 13 PRO B 143 ILE B 147 5 5 HELIX 14 14 TYR B 162 LYS B 173 1 12 HELIX 15 15 LYS B 196 ASN B 209 1 14 SHEET 1 A 4 VAL A 89 HIS A 91 0 SHEET 2 A 4 THR A 110 VAL A 114 1 O PHE A 112 N ILE A 90 SHEET 3 A 4 LEU A 120 SER A 125 -1 O VAL A 121 N VAL A 113 SHEET 4 A 4 THR A 149 ARG A 150 -1 O THR A 149 N VAL A 123 SHEET 1 B 3 CYS A 157 ARG A 158 0 SHEET 2 B 3 ALA A 177 THR A 184 1 O ILE A 181 N CYS A 157 SHEET 3 B 3 GLY A 187 THR A 195 -1 O ILE A 191 N VAL A 180 SHEET 1 C 4 VAL B 89 HIS B 91 0 SHEET 2 C 4 THR B 110 VAL B 114 1 O VAL B 114 N ILE B 90 SHEET 3 C 4 LEU B 120 SER B 125 -1 O GLY B 122 N VAL B 113 SHEET 4 C 4 THR B 149 ARG B 150 -1 O THR B 149 N VAL B 123 SHEET 1 D 2 ALA B 177 THR B 184 0 SHEET 2 D 2 GLY B 187 THR B 195 -1 O ILE B 191 N VAL B 180 CISPEP 1 ILE A 134 GLY A 135 0 -16.62 CISPEP 2 GLY A 135 GLN A 136 0 -10.38 CISPEP 3 GLN A 136 GLN A 137 0 11.49 CISPEP 4 MET A 151 PRO A 152 0 15.06 CISPEP 5 MET B 151 PRO B 152 0 4.13 SITE 1 AC1 19 VAL A 123 SER A 125 LYS A 127 ASP A 128 SITE 2 AC1 19 THR A 149 ASN A 153 ILE A 154 THR A 155 SITE 3 AC1 19 GLN A 174 ILE A 175 ASP A 176 ALA A 177 SITE 4 AC1 19 MG A 223 MG A 224 HOH A 227 HOH A 253 SITE 5 AC1 19 HOH A 254 ASP B 107 ARG B 126 SITE 1 AC2 6 ARG A 193 THR A 195 THR A 197 HOH A 239 SITE 2 AC2 6 HOH A 252 HOH A 258 SITE 1 AC3 5 GLY A 109 THR A 110 ASP A 176 ANP A 221 SITE 2 AC3 5 HOH A 254 SITE 1 AC4 3 GLN A 174 ILE A 175 ANP A 221 SITE 1 AC5 21 ASP A 107 ARG A 126 HOH A 252 VAL B 123 SITE 2 AC5 21 SER B 125 LYS B 127 ASP B 128 THR B 149 SITE 3 AC5 21 ASN B 153 ILE B 154 THR B 155 GLN B 174 SITE 4 AC5 21 ILE B 175 ASP B 176 ALA B 177 LEU B 178 SITE 5 AC5 21 MG B 223 HOH B 241 HOH B 250 HOH B 251 SITE 6 AC5 21 HOH B 263 SITE 1 AC6 6 GLY B 109 ARG B 193 THR B 195 THR B 197 SITE 2 AC6 6 HOH B 227 HOH B 255 SITE 1 AC7 4 ARG A 126 GLY B 109 ARG B 126 ANP B 221 CRYST1 54.025 103.969 98.387 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010164 0.00000