HEADER MEMBRANE PROTEIN 19-JAN-09 3FWZ TITLE CRYSTAL STRUCTURE OF TRKA-N DOMAIN OF INNER MEMBRANE PROTEIN YBAL FROM TITLE 2 ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: INNER MEMBRANE PROTEIN YBAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DOMAIN TRKA-N, RESIDUES 414-550; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: B0478, ESCHERICHIA COLI CFT073, JW0467, YBAL, YLAA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS TRKA-N DOMAIN, YBAL, E.COLI, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 ANTIPORT, CELL INNER MEMBRANE, CELL MEMBRANE, ION TRANSPORT, KEYWDS 4 MEMBRANE, TRANSMEMBRANE, TRANSPORT, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,L.BIGELOW,K.BUCK,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 20-NOV-24 3FWZ 1 REMARK LINK REVDAT 2 13-JUL-11 3FWZ 1 VERSN REVDAT 1 10-FEB-09 3FWZ 0 JRNL AUTH C.CHANG,L.BIGELOW,K.BUCK,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF TRKA-N DOMAIN OF INNER MEMBRANE PROTEIN JRNL TITL 2 YBAL FROM ESCHERICHIA COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0054 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 24633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1456 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.1600 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2100 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 201 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.16000 REMARK 3 B22 (A**2) : -0.77000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.510 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2252 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3072 ; 1.470 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 5.178 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;32.354 ;23.673 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 392 ;13.405 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;18.612 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1677 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1408 ; 0.702 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2262 ; 1.284 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 844 ; 2.297 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 810 ; 3.706 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 416 A 489 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5977 27.1590 43.8738 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.0409 REMARK 3 T33: 0.0178 T12: -0.0276 REMARK 3 T13: 0.0054 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.5409 L22: 2.0768 REMARK 3 L33: 1.7342 L12: -0.8860 REMARK 3 L13: 0.1090 L23: -0.3526 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: 0.1598 S13: 0.0547 REMARK 3 S21: -0.3454 S22: -0.0359 S23: -0.0514 REMARK 3 S31: -0.0894 S32: -0.0429 S33: 0.0034 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 490 A 535 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7438 12.9511 51.1536 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: 0.0332 REMARK 3 T33: 0.0511 T12: -0.0099 REMARK 3 T13: 0.0177 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.6390 L22: 1.7214 REMARK 3 L33: 2.5170 L12: 0.5694 REMARK 3 L13: -0.2096 L23: 0.5952 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: -0.0541 S13: -0.0679 REMARK 3 S21: -0.1146 S22: 0.1098 S23: -0.0727 REMARK 3 S31: 0.0763 S32: 0.1306 S33: -0.0631 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 536 A 550 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1836 24.5254 67.0503 REMARK 3 T TENSOR REMARK 3 T11: 0.0439 T22: 0.0668 REMARK 3 T33: 0.0992 T12: 0.0009 REMARK 3 T13: 0.0075 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 4.1197 L22: 3.9889 REMARK 3 L33: 1.6243 L12: 3.9229 REMARK 3 L13: 1.2344 L23: 1.4285 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: -0.0213 S13: -0.1545 REMARK 3 S21: 0.0222 S22: -0.0387 S23: -0.1496 REMARK 3 S31: -0.0056 S32: 0.0575 S33: -0.0400 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 416 B 489 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0753 18.1746 82.0590 REMARK 3 T TENSOR REMARK 3 T11: 0.0232 T22: 0.0152 REMARK 3 T33: 0.0287 T12: 0.0070 REMARK 3 T13: -0.0187 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.9806 L22: 2.5792 REMARK 3 L33: 1.5518 L12: -0.6632 REMARK 3 L13: 0.4095 L23: -0.5584 REMARK 3 S TENSOR REMARK 3 S11: -0.0866 S12: -0.0554 S13: 0.0505 REMARK 3 S21: 0.2254 S22: 0.0243 S23: -0.2021 REMARK 3 S31: -0.0073 S32: -0.0055 S33: 0.0623 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 490 B 535 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1173 32.2008 75.0408 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.0151 REMARK 3 T33: 0.0570 T12: -0.0055 REMARK 3 T13: 0.0040 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.3895 L22: 1.3631 REMARK 3 L33: 0.9592 L12: -0.6116 REMARK 3 L13: -0.0499 L23: 0.3152 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: -0.0031 S13: 0.0399 REMARK 3 S21: -0.0679 S22: 0.0700 S23: -0.0112 REMARK 3 S31: -0.0725 S32: 0.0159 S33: -0.0446 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 536 B 548 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6303 26.7370 55.1002 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: 0.0752 REMARK 3 T33: 0.0914 T12: -0.0549 REMARK 3 T13: -0.0046 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 5.7237 L22: 2.9584 REMARK 3 L33: 5.3222 L12: 0.6315 REMARK 3 L13: -0.7684 L23: 1.9897 REMARK 3 S TENSOR REMARK 3 S11: -0.1402 S12: 0.1761 S13: 0.0446 REMARK 3 S21: -0.1086 S22: 0.2476 S23: -0.1713 REMARK 3 S31: -0.2812 S32: 0.2682 S33: -0.1074 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051146. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24652 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 47.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.19600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 11.65 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 20% PEG3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.53550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 411 REMARK 465 ASN B 412 REMARK 465 ALA B 413 REMARK 465 THR B 549 REMARK 465 PRO B 550 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 411 OG REMARK 470 SER A 439 OG REMARK 470 ASP A 440 CG OD1 OD2 REMARK 470 GLU A 526 CG CD OE1 OE2 REMARK 470 VAL B 414 CG1 CG2 REMARK 470 ASP B 415 CG OD1 OD2 REMARK 470 GLU B 548 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 99 O HOH A 183 2.10 REMARK 500 O HOH B 157 O HOH B 180 2.11 REMARK 500 O HOH B 157 O HOH B 189 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 517 OE2 GLU B 526 2747 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 425 49.55 -141.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 17 O REMARK 620 2 HOH B 18 O 91.3 REMARK 620 3 HOH B 59 O 178.1 86.8 REMARK 620 4 HOH B 82 O 93.2 88.1 86.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC62901.3 RELATED DB: TARGETDB DBREF 3FWZ A 414 550 UNP P39830 YBAL_ECOLI 414 550 DBREF 3FWZ B 414 550 UNP P39830 YBAL_ECOLI 414 550 SEQADV 3FWZ SER A 411 UNP P39830 EXPRESSION TAG SEQADV 3FWZ ASN A 412 UNP P39830 EXPRESSION TAG SEQADV 3FWZ ALA A 413 UNP P39830 EXPRESSION TAG SEQADV 3FWZ SER B 411 UNP P39830 EXPRESSION TAG SEQADV 3FWZ ASN B 412 UNP P39830 EXPRESSION TAG SEQADV 3FWZ ALA B 413 UNP P39830 EXPRESSION TAG SEQRES 1 A 140 SER ASN ALA VAL ASP ILE CYS ASN HIS ALA LEU LEU VAL SEQRES 2 A 140 GLY TYR GLY ARG VAL GLY SER LEU LEU GLY GLU LYS LEU SEQRES 3 A 140 LEU ALA SER ASP ILE PRO LEU VAL VAL ILE GLU THR SER SEQRES 4 A 140 ARG THR ARG VAL ASP GLU LEU ARG GLU ARG GLY VAL ARG SEQRES 5 A 140 ALA VAL LEU GLY ASN ALA ALA ASN GLU GLU ILE MSE GLN SEQRES 6 A 140 LEU ALA HIS LEU GLU CYS ALA LYS TRP LEU ILE LEU THR SEQRES 7 A 140 ILE PRO ASN GLY TYR GLU ALA GLY GLU ILE VAL ALA SER SEQRES 8 A 140 ALA ARG ALA LYS ASN PRO ASP ILE GLU ILE ILE ALA ARG SEQRES 9 A 140 ALA HIS TYR ASP ASP GLU VAL ALA TYR ILE THR GLU ARG SEQRES 10 A 140 GLY ALA ASN GLN VAL VAL MSE GLY GLU ARG GLU ILE ALA SEQRES 11 A 140 ARG THR MSE LEU GLU LEU LEU GLU THR PRO SEQRES 1 B 140 SER ASN ALA VAL ASP ILE CYS ASN HIS ALA LEU LEU VAL SEQRES 2 B 140 GLY TYR GLY ARG VAL GLY SER LEU LEU GLY GLU LYS LEU SEQRES 3 B 140 LEU ALA SER ASP ILE PRO LEU VAL VAL ILE GLU THR SER SEQRES 4 B 140 ARG THR ARG VAL ASP GLU LEU ARG GLU ARG GLY VAL ARG SEQRES 5 B 140 ALA VAL LEU GLY ASN ALA ALA ASN GLU GLU ILE MSE GLN SEQRES 6 B 140 LEU ALA HIS LEU GLU CYS ALA LYS TRP LEU ILE LEU THR SEQRES 7 B 140 ILE PRO ASN GLY TYR GLU ALA GLY GLU ILE VAL ALA SER SEQRES 8 B 140 ALA ARG ALA LYS ASN PRO ASP ILE GLU ILE ILE ALA ARG SEQRES 9 B 140 ALA HIS TYR ASP ASP GLU VAL ALA TYR ILE THR GLU ARG SEQRES 10 B 140 GLY ALA ASN GLN VAL VAL MSE GLY GLU ARG GLU ILE ALA SEQRES 11 B 140 ARG THR MSE LEU GLU LEU LEU GLU THR PRO MODRES 3FWZ MSE A 474 MET SELENOMETHIONINE MODRES 3FWZ MSE A 534 MET SELENOMETHIONINE MODRES 3FWZ MSE A 543 MET SELENOMETHIONINE MODRES 3FWZ MSE B 474 MET SELENOMETHIONINE MODRES 3FWZ MSE B 534 MET SELENOMETHIONINE MODRES 3FWZ MSE B 543 MET SELENOMETHIONINE HET MSE A 474 8 HET MSE A 534 8 HET MSE A 543 8 HET MSE B 474 16 HET MSE B 534 8 HET MSE B 543 8 HET AMP A 601 23 HET AMP B 601 23 HET MG B 602 1 HETNAM MSE SELENOMETHIONINE HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 5 MG MG 2+ FORMUL 6 HOH *201(H2 O) HELIX 1 1 GLY A 426 SER A 439 1 14 HELIX 2 2 SER A 449 ARG A 459 1 11 HELIX 3 3 ASN A 470 ALA A 477 1 8 HELIX 4 4 HIS A 478 ALA A 482 5 5 HELIX 5 5 ASN A 491 ASN A 506 1 16 HELIX 6 6 TYR A 517 ARG A 527 1 11 HELIX 7 7 GLY A 535 THR A 549 1 15 HELIX 8 8 GLY B 426 SER B 439 1 14 HELIX 9 9 SER B 449 ARG B 459 1 11 HELIX 10 10 ASN B 470 ALA B 477 1 8 HELIX 11 11 HIS B 478 ALA B 482 5 5 HELIX 12 12 ASN B 491 ASN B 506 1 16 HELIX 13 13 TYR B 517 ARG B 527 1 11 HELIX 14 14 GLY B 535 GLU B 548 1 14 SHEET 1 A 6 ARG A 462 LEU A 465 0 SHEET 2 A 6 LEU A 443 GLU A 447 1 N VAL A 445 O VAL A 464 SHEET 3 A 6 ALA A 420 VAL A 423 1 N LEU A 422 O ILE A 446 SHEET 4 A 6 TRP A 484 LEU A 487 1 O ILE A 486 N LEU A 421 SHEET 5 A 6 GLU A 510 ALA A 515 1 O ILE A 512 N LEU A 487 SHEET 6 A 6 GLN A 531 MSE A 534 1 O VAL A 533 N ALA A 513 SHEET 1 B 6 ARG B 462 LEU B 465 0 SHEET 2 B 6 LEU B 443 GLU B 447 1 N VAL B 445 O VAL B 464 SHEET 3 B 6 ALA B 420 VAL B 423 1 N LEU B 422 O VAL B 444 SHEET 4 B 6 TRP B 484 LEU B 487 1 O ILE B 486 N VAL B 423 SHEET 5 B 6 GLU B 510 ALA B 515 1 O ILE B 512 N LEU B 487 SHEET 6 B 6 GLN B 531 MSE B 534 1 O VAL B 533 N ALA B 513 SSBOND 1 CYS A 417 CYS A 481 1555 1555 2.06 SSBOND 2 CYS B 417 CYS B 481 1555 1555 2.05 LINK C ILE A 473 N MSE A 474 1555 1555 1.33 LINK C MSE A 474 N GLN A 475 1555 1555 1.33 LINK C VAL A 533 N MSE A 534 1555 1555 1.33 LINK C MSE A 534 N GLY A 535 1555 1555 1.33 LINK C THR A 542 N MSE A 543 1555 1555 1.33 LINK C MSE A 543 N ALEU A 544 1555 1555 1.33 LINK C MSE A 543 N BLEU A 544 1555 1555 1.33 LINK C ILE B 473 N AMSE B 474 1555 1555 1.33 LINK C ILE B 473 N BMSE B 474 1555 1555 1.34 LINK C AMSE B 474 N GLN B 475 1555 1555 1.34 LINK C BMSE B 474 N GLN B 475 1555 1555 1.33 LINK C VAL B 533 N MSE B 534 1555 1555 1.33 LINK C MSE B 534 N GLY B 535 1555 1555 1.33 LINK C THR B 542 N MSE B 543 1555 1555 1.33 LINK C MSE B 543 N LEU B 544 1555 1555 1.33 LINK O HOH B 17 MG MG B 602 1555 1555 2.17 LINK O HOH B 18 MG MG B 602 1555 1555 2.10 LINK O HOH B 59 MG MG B 602 1555 1555 2.08 LINK O HOH B 82 MG MG B 602 1555 1555 2.14 SITE 1 AC1 18 HOH A 4 HOH A 36 HOH A 79 HOH A 106 SITE 2 AC1 18 HOH A 120 GLY A 424 GLY A 426 ARG A 427 SITE 3 AC1 18 VAL A 428 GLU A 447 THR A 448 ARG A 452 SITE 4 AC1 18 GLY A 466 ASN A 467 ALA A 468 ILE A 489 SITE 5 AC1 18 GLU A 494 ARG A 514 SITE 1 AC2 16 HOH B 8 HOH B 39 HOH B 176 HOH B 180 SITE 2 AC2 16 GLY B 424 GLY B 426 ARG B 427 VAL B 428 SITE 3 AC2 16 GLU B 447 THR B 448 GLY B 466 ASN B 467 SITE 4 AC2 16 ALA B 468 ILE B 489 GLU B 494 ARG B 514 SITE 1 AC3 5 HOH A 54 HOH B 17 HOH B 18 HOH B 59 SITE 2 AC3 5 HOH B 82 CRYST1 34.801 53.071 72.537 90.00 97.82 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028735 0.000000 0.003945 0.00000 SCALE2 0.000000 0.018843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013915 0.00000