HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-JAN-09 3FYB TITLE CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION (DUF1244) FROM TITLE 2 ALCANIVORAX BORKUMENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN OF UNKNOWN FUNCTION (DUF1244); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALCANIVORAX BORKUMENSIS SK2; SOURCE 3 ORGANISM_TAXID: 393595; SOURCE 4 STRAIN: SK2 / ATCC 700651 / DSM 11573; SOURCE 5 GENE: ABO_0290; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TVLIC; SOURCE 11 OTHER_DETAILS: DIGESTED WITH TEV TO REMOVE THE N-TERMINAL HIS TAG KEYWDS UNKNOWN FUNCTION, DUF1244, ALCANIVORAX BORKUMENSIS, HYDROCARBON- KEYWDS 2 DEGRADING, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TARGET APC7960 EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,E.EVDOKIMOVA,O.KAGAN,A.M.EDWARDS,A.JOACHIMIAK,A.SAVCHENKO, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 22-NOV-23 3FYB 1 REMARK REVDAT 3 06-SEP-23 3FYB 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3FYB 1 VERSN REVDAT 1 03-FEB-09 3FYB 0 JRNL AUTH A.U.SINGER,E.EVDOKIMOVA,O.KAGAN,A.M.EDWARDS,A.JOACHIMIAK, JRNL AUTH 2 A.SAVCHENKO JRNL TITL CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION (DUF1244) JRNL TITL 2 FROM ALCANIVORAX BORKUMENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1132 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1463 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1489 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.667 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1570 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2111 ; 1.374 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 190 ; 4.766 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;40.198 ;25.176 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;12.383 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 9.958 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 216 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1213 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 791 ; 0.231 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1094 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 149 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.254 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 972 ; 1.019 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1492 ; 1.353 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 692 ; 2.803 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 619 ; 3.608 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 31.5020 63.9667 17.9688 REMARK 3 T TENSOR REMARK 3 T11: -0.0597 T22: -0.0540 REMARK 3 T33: -0.0598 T12: 0.0059 REMARK 3 T13: 0.0049 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.0538 L22: 1.6485 REMARK 3 L33: 2.3982 L12: -0.0706 REMARK 3 L13: 0.2165 L23: 1.0927 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: -0.0989 S13: 0.0109 REMARK 3 S21: 0.1438 S22: 0.0518 S23: 0.0609 REMARK 3 S31: 0.0758 S32: -0.0889 S33: -0.0393 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 96 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1977 49.9976 15.6200 REMARK 3 T TENSOR REMARK 3 T11: -0.0784 T22: -0.0407 REMARK 3 T33: -0.0434 T12: -0.0047 REMARK 3 T13: -0.0131 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.2173 L22: 2.7957 REMARK 3 L33: 1.6870 L12: 0.2185 REMARK 3 L13: -0.0400 L23: -0.8916 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: -0.1473 S13: -0.1125 REMARK 3 S21: 0.1238 S22: 0.0453 S23: 0.0545 REMARK 3 S31: 0.0387 S32: -0.0525 S33: -0.0934 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3FYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 32.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.5260 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2O35 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 20% PEG 3350. 25% ETHYLENE REMARK 280 GLYCOL ADDED AS A CRYOPROTECTANT, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.25050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.96050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.76800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.96050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.25050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.76800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 98 REMARK 465 ALA A 99 REMARK 465 ALA A 100 REMARK 465 ARG A 101 REMARK 465 LYS A 102 REMARK 465 ARG A 103 REMARK 465 GLU B 88 REMARK 465 ALA B 89 REMARK 465 GLN B 90 REMARK 465 LEU B 91 REMARK 465 ALA B 92 REMARK 465 ALA B 93 REMARK 465 PHE B 94 REMARK 465 GLU B 95 REMARK 465 ALA B 96 REMARK 465 LYS B 97 REMARK 465 GLN B 98 REMARK 465 ALA B 99 REMARK 465 ALA B 100 REMARK 465 ARG B 101 REMARK 465 LYS B 102 REMARK 465 ARG B 103 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 84 CG CD CE NZ REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 106 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2O35 RELATED DB: PDB REMARK 900 PROTEIN OF UNKNOWN FUNCTION (DUF1244) FROM SINORHIZOBIUM MELILOTI REMARK 900 RELATED ID: APC7960 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE TARGET ID APC7960 DID NOT EXIST IN THE TARGETDB REMARK 999 AT THE TIME OF DEPOSITION. DBREF 3FYB A 1 103 UNP Q0VSW0 Q0VSW0_ALCBS 1 103 DBREF 3FYB B 1 103 UNP Q0VSW0 Q0VSW0_ALCBS 1 103 SEQADV 3FYB GLY A 0 UNP Q0VSW0 EXPRESSION TAG SEQADV 3FYB GLY B 0 UNP Q0VSW0 EXPRESSION TAG SEQRES 1 A 104 GLY MSE ALA ASP ILE ASP GLN ALA SER LYS THR GLU MSE SEQRES 2 A 104 GLU ALA ALA ALA PHE ARG HIS LEU LEU ARG HIS LEU ASP SEQRES 3 A 104 GLU HIS LYS ASP VAL GLN ASN ILE ASP LEU MSE ILE GLN SEQRES 4 A 104 ALA ASP PHE CYS ARG ASN CYS LEU ALA LYS TRP LEU MSE SEQRES 5 A 104 GLU ALA ALA THR GLU GLN GLY VAL GLU LEU ASP TYR ASP SEQRES 6 A 104 GLY ALA ARG GLU TYR VAL TYR GLY MSE PRO PHE ALA GLU SEQRES 7 A 104 TRP LYS THR LEU TYR GLN LYS PRO ALA SER GLU ALA GLN SEQRES 8 A 104 LEU ALA ALA PHE GLU ALA LYS GLN ALA ALA ARG LYS ARG SEQRES 1 B 104 GLY MSE ALA ASP ILE ASP GLN ALA SER LYS THR GLU MSE SEQRES 2 B 104 GLU ALA ALA ALA PHE ARG HIS LEU LEU ARG HIS LEU ASP SEQRES 3 B 104 GLU HIS LYS ASP VAL GLN ASN ILE ASP LEU MSE ILE GLN SEQRES 4 B 104 ALA ASP PHE CYS ARG ASN CYS LEU ALA LYS TRP LEU MSE SEQRES 5 B 104 GLU ALA ALA THR GLU GLN GLY VAL GLU LEU ASP TYR ASP SEQRES 6 B 104 GLY ALA ARG GLU TYR VAL TYR GLY MSE PRO PHE ALA GLU SEQRES 7 B 104 TRP LYS THR LEU TYR GLN LYS PRO ALA SER GLU ALA GLN SEQRES 8 B 104 LEU ALA ALA PHE GLU ALA LYS GLN ALA ALA ARG LYS ARG MODRES 3FYB MSE A 1 MET SELENOMETHIONINE MODRES 3FYB MSE A 12 MET SELENOMETHIONINE MODRES 3FYB MSE A 36 MET SELENOMETHIONINE MODRES 3FYB MSE A 51 MET SELENOMETHIONINE MODRES 3FYB MSE A 73 MET SELENOMETHIONINE MODRES 3FYB MSE B 1 MET SELENOMETHIONINE MODRES 3FYB MSE B 12 MET SELENOMETHIONINE MODRES 3FYB MSE B 36 MET SELENOMETHIONINE MODRES 3FYB MSE B 51 MET SELENOMETHIONINE MODRES 3FYB MSE B 73 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 12 8 HET MSE A 36 8 HET MSE A 51 8 HET MSE A 73 8 HET MSE B 1 8 HET MSE B 12 8 HET MSE B 36 8 HET MSE B 51 8 HET MSE B 73 8 HET CL A 104 1 HET CL A 105 1 HET CA A 106 1 HET PEG A 107 14 HET EDO A 108 4 HET CL B 104 1 HET CA B 105 1 HET PEG B 106 7 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 CL 3(CL 1-) FORMUL 5 CA 2(CA 2+) FORMUL 6 PEG 2(C4 H10 O3) FORMUL 7 EDO C2 H6 O2 FORMUL 11 HOH *181(H2 O) HELIX 1 1 GLY A 0 ILE A 4 5 5 HELIX 2 2 ASP A 5 GLU A 26 1 22 HELIX 3 3 GLN A 31 ASP A 40 1 10 HELIX 4 4 CYS A 42 GLY A 58 1 17 HELIX 5 5 ASP A 62 GLY A 72 1 11 HELIX 6 6 PRO A 74 GLN A 83 1 10 HELIX 7 7 SER A 87 LYS A 97 1 11 HELIX 8 8 GLY B 0 ILE B 4 5 5 HELIX 9 9 ASP B 5 GLU B 26 1 22 HELIX 10 10 GLN B 31 ASP B 40 1 10 HELIX 11 11 CYS B 42 GLN B 57 1 16 HELIX 12 12 ASP B 62 GLY B 72 1 11 HELIX 13 13 PRO B 74 GLN B 83 1 10 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N ALA A 2 1555 1555 1.34 LINK C GLU A 11 N MSE A 12 1555 1555 1.33 LINK C MSE A 12 N GLU A 13 1555 1555 1.33 LINK C LEU A 35 N MSE A 36 1555 1555 1.34 LINK C MSE A 36 N ILE A 37 1555 1555 1.33 LINK C LEU A 50 N MSE A 51 1555 1555 1.33 LINK C MSE A 51 N GLU A 52 1555 1555 1.34 LINK C GLY A 72 N MSE A 73 1555 1555 1.33 LINK C MSE A 73 N PRO A 74 1555 1555 1.36 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ALA B 2 1555 1555 1.33 LINK C GLU B 11 N MSE B 12 1555 1555 1.34 LINK C MSE B 12 N GLU B 13 1555 1555 1.32 LINK C LEU B 35 N MSE B 36 1555 1555 1.33 LINK C MSE B 36 N ILE B 37 1555 1555 1.33 LINK C LEU B 50 N MSE B 51 1555 1555 1.34 LINK C MSE B 51 N GLU B 52 1555 1555 1.34 LINK C GLY B 72 N MSE B 73 1555 1555 1.33 LINK C MSE B 73 N PRO B 74 1555 1555 1.35 SITE 1 AC1 3 ASN A 32 TRP A 78 GLN A 83 SITE 1 AC2 3 ASN A 32 ASN A 44 GLN A 83 SITE 1 AC3 1 VAL A 70 SITE 1 AC4 5 ALA A 15 ARG A 18 ARG A 22 HOH A 241 SITE 2 AC4 5 GLU B 56 SITE 1 AC5 6 GLY A 65 TYR A 69 HOH A 192 HOH A 236 SITE 2 AC5 6 GLY B 0 MSE B 1 SITE 1 AC6 4 GLN B 31 ASN B 32 TRP B 78 GLN B 83 SITE 1 AC7 6 GLN A 57 LYS A 84 SER B 8 THR B 55 SITE 2 AC7 6 GLU B 60 HOH B 137 CRYST1 40.501 69.536 81.921 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024691 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012207 0.00000