HEADER RECOMBINATION 22-JAN-09 3FYH TITLE RECOMBINASE IN COMPLEX WITH ADP AND METATUNGSTATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR AND RECOMBINATION PROTEIN RADA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS VOLTAE; SOURCE 3 ORGANISM_TAXID: 2188; SOURCE 4 GENE: RADA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS-RIL KEYWDS ATPASE, RADA, RAD51, RECA, RECOMBINASE, INHIBITOR, RADA-INHIBITOR KEYWDS 2 COMPLEX, ATP-BINDING, DNA DAMAGE, DNA RECOMBINATION, DNA-BINDING, KEYWDS 3 NUCLEOTIDE-BINDING, RECOMBINATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.LI,Y.HE,Y.LUO REVDAT 4 06-SEP-23 3FYH 1 REMARK REVDAT 3 20-OCT-21 3FYH 1 REMARK SEQADV LINK REVDAT 2 01-NOV-17 3FYH 1 REMARK REVDAT 1 01-SEP-09 3FYH 0 JRNL AUTH Y.LI,Y.HE,Y.LUO JRNL TITL CRYSTAL STRUCTURE OF AN ARCHAEAL RAD51 HOMOLOGUE IN COMPLEX JRNL TITL 2 WITH A METATUNGSTATE INHIBITOR. JRNL REF BIOCHEMISTRY V. 48 6805 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19555119 JRNL DOI 10.1021/BI900832T REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 32232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3591 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2283 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.730 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ANP_XPLOR.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS REFINEMENT REMARK 4 REMARK 4 3FYH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.90 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTALS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : LSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32232 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : 0.42000 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1T4G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M MAGNESIUM CHLORIDE, 0.4 M NA REMARK 280 CL, 0.05 M TRIS, 7% PEG 3350, 0.5 MM NA6H2W12O40, PH 7.90, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.61667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.23333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.42500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.04167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.80833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PROTEIN FUNCTION AS A FILAMENT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 223 REMARK 465 ARG A 224 REMARK 465 GLY A 225 REMARK 465 ALA A 260 REMARK 465 LYS A 261 REMARK 465 PRO A 262 REMARK 465 ASP A 263 REMARK 465 ALA A 264 REMARK 465 PHE A 265 REMARK 465 PHE A 266 REMARK 465 GLY A 267 REMARK 465 MET A 268 REMARK 465 ALA A 269 REMARK 465 GLU A 270 REMARK 465 GLN A 271 REMARK 465 ALA A 272 REMARK 465 ILE A 273 REMARK 465 GLY A 274 REMARK 465 GLY A 275 REMARK 465 HIS A 276 REMARK 465 ILE A 277 REMARK 465 VAL A 278 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 250 CB CYS A 250 SG -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 40 7.30 -65.09 REMARK 500 GLU A 42 127.53 61.56 REMARK 500 TYR A 221 72.03 -119.61 REMARK 500 GLN A 232 -74.11 -61.98 REMARK 500 ALA A 281 47.76 -62.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 509 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 6 O REMARK 620 2 LEU A 8 O 103.5 REMARK 620 3 VAL A 11 O 94.4 99.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 98 O REMARK 620 2 ASP A 246 OD1 90.9 REMARK 620 3 HOH A 604 O 95.0 80.5 REMARK 620 4 HOH A 605 O 178.9 89.9 84.6 REMARK 620 5 HOH A 606 O 88.9 93.0 172.5 91.7 REMARK 620 6 HOH A 607 O 85.4 176.0 101.4 93.8 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 112 OG1 REMARK 620 2 ADP A 401 O1B 91.1 REMARK 620 3 HOH A 601 O 84.5 96.2 REMARK 620 4 HOH A 602 O 88.2 85.2 172.6 REMARK 620 5 HOH A 603 O 179.2 88.2 95.3 92.0 REMARK 620 6 HOH A 608 O 87.2 176.0 87.1 91.2 93.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 521 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 522 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 523 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 524 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 525 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 526 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 527 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 528 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 529 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 530 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 531 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 532 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 533 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE W A 534 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F1J RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH ADP DBREF 3FYH A 1 322 UNP O73948 RADA_METVO 1 322 SEQADV 3FYH GLY A 2 UNP O73948 SER 2 ENGINEERED MUTATION SEQRES 1 A 322 MET GLY ASP ASN LEU THR ASP LEU PRO GLY VAL GLY PRO SEQRES 2 A 322 SER THR ALA GLU LYS LEU VAL GLU ALA GLY TYR ILE ASP SEQRES 3 A 322 PHE MET LYS ILE ALA THR ALA THR VAL GLY GLU LEU THR SEQRES 4 A 322 ASP ILE GLU GLY ILE SER GLU LYS ALA ALA ALA LYS MET SEQRES 5 A 322 ILE MET GLY ALA ARG ASP LEU CYS ASP LEU GLY PHE LYS SEQRES 6 A 322 SER GLY ILE ASP LEU LEU LYS GLN ARG SER THR VAL TRP SEQRES 7 A 322 LYS LEU SER THR SER SER SER GLU LEU ASP SER VAL LEU SEQRES 8 A 322 GLY GLY GLY LEU GLU SER GLN SER VAL THR GLU PHE ALA SEQRES 9 A 322 GLY VAL PHE GLY SER GLY LYS THR GLN ILE MET HIS GLN SEQRES 10 A 322 SER CYS VAL ASN LEU GLN ASN PRO GLU PHE LEU PHE TYR SEQRES 11 A 322 ASP GLU GLU ALA VAL SER LYS GLY GLU VAL ALA GLN PRO SEQRES 12 A 322 LYS ALA VAL TYR ILE ASP THR GLU GLY THR PHE ARG PRO SEQRES 13 A 322 GLU ARG ILE MET GLN MET ALA GLU HIS ALA GLY ILE ASP SEQRES 14 A 322 GLY GLN THR VAL LEU ASP ASN THR PHE VAL ALA ARG ALA SEQRES 15 A 322 TYR ASN SER ASP MET GLN MET LEU PHE ALA GLU LYS ILE SEQRES 16 A 322 GLU ASP LEU ILE GLN GLU GLY ASN ASN ILE LYS LEU VAL SEQRES 17 A 322 VAL ILE ASP SER LEU THR SER THR PHE ARG ASN GLU TYR SEQRES 18 A 322 THR GLY ARG GLY LYS LEU ALA GLU ARG GLN GLN LYS LEU SEQRES 19 A 322 GLY ARG HIS MET ALA THR LEU ASN LYS LEU ALA ASP LEU SEQRES 20 A 322 PHE ASN CYS VAL VAL LEU VAL THR ASN GLN VAL SER ALA SEQRES 21 A 322 LYS PRO ASP ALA PHE PHE GLY MET ALA GLU GLN ALA ILE SEQRES 22 A 322 GLY GLY HIS ILE VAL GLY HIS ALA ALA THR PHE ARG PHE SEQRES 23 A 322 PHE VAL ARG LYS GLY LYS GLY ASP LYS ARG VAL ALA LYS SEQRES 24 A 322 LEU TYR ASP SER PRO HIS LEU PRO ASP ALA GLU ALA ILE SEQRES 25 A 322 PHE ARG ILE THR GLU LYS GLY ILE GLN ASP HET ADP A 401 27 HET MG A 501 1 HET MG A 502 1 HET NA A 509 1 HET W A 511 1 HET W A 512 1 HET W A 513 1 HET W A 514 1 HET W A 515 1 HET W A 516 1 HET W A 517 1 HET W A 518 1 HET W A 519 1 HET W A 520 1 HET W A 521 1 HET W A 522 1 HET W A 523 1 HET W A 524 1 HET W A 525 1 HET W A 526 1 HET W A 527 1 HET W A 528 1 HET W A 529 1 HET W A 530 1 HET W A 531 1 HET W A 532 1 HET W A 533 1 HET W A 534 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM W TUNGSTEN ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 NA NA 1+ FORMUL 6 W 24(W 6+) FORMUL 30 HOH *123(H2 O) HELIX 1 1 GLY A 12 ALA A 22 1 11 HELIX 2 2 ASP A 26 THR A 32 1 7 HELIX 3 3 THR A 34 ASP A 40 1 7 HELIX 4 4 SER A 45 CYS A 60 1 16 HELIX 5 5 GLY A 67 SER A 75 1 9 HELIX 6 6 SER A 84 LEU A 91 1 8 HELIX 7 7 GLY A 110 LEU A 122 1 13 HELIX 8 8 GLN A 123 GLU A 126 5 4 HELIX 9 9 SER A 136 ALA A 141 5 6 HELIX 10 10 ARG A 155 ALA A 166 1 12 HELIX 11 11 ASP A 169 ASN A 176 1 8 HELIX 12 12 ASN A 184 GLU A 201 1 18 HELIX 13 13 THR A 214 TYR A 221 1 8 HELIX 14 14 LYS A 226 PHE A 248 1 23 SHEET 1 A 3 LEU A 95 GLU A 96 0 SHEET 2 A 3 LYS A 79 LEU A 80 -1 N LEU A 80 O LEU A 95 SHEET 3 A 3 LEU A 128 PHE A 129 -1 O PHE A 129 N LYS A 79 SHEET 1 B 9 THR A 177 ARG A 181 0 SHEET 2 B 9 PRO A 143 ASP A 149 1 N ALA A 145 O PHE A 178 SHEET 3 B 9 ASN A 204 ASP A 211 1 O VAL A 209 N ILE A 148 SHEET 4 B 9 VAL A 251 GLN A 257 1 O LEU A 253 N VAL A 208 SHEET 5 B 9 SER A 99 GLY A 105 1 N THR A 101 O VAL A 252 SHEET 6 B 9 PHE A 284 LYS A 290 1 O VAL A 288 N ALA A 104 SHEET 7 B 9 LYS A 295 ASP A 302 -1 O LYS A 299 N PHE A 287 SHEET 8 B 9 ALA A 309 THR A 316 -1 O ALA A 311 N ALA A 298 SHEET 9 B 9 GLY A 319 GLN A 321 -1 O GLN A 321 N ARG A 314 LINK O THR A 6 NA NA A 509 1555 1555 2.07 LINK O LEU A 8 NA NA A 509 1555 1555 2.45 LINK O VAL A 11 NA NA A 509 1555 1555 2.40 LINK O GLN A 98 MG MG A 502 1555 1555 2.10 LINK OG1 THR A 112 MG MG A 501 1555 1555 2.13 LINK OD1 ASP A 246 MG MG A 502 1555 1555 2.11 LINK O1B ADP A 401 MG MG A 501 1555 1555 2.12 LINK MG MG A 501 O HOH A 601 1555 1555 2.19 LINK MG MG A 501 O HOH A 602 1555 1555 2.17 LINK MG MG A 501 O HOH A 603 1555 1555 2.09 LINK MG MG A 501 O HOH A 608 1555 1555 2.20 LINK MG MG A 502 O HOH A 604 1555 1555 2.09 LINK MG MG A 502 O HOH A 605 1555 1555 2.13 LINK MG MG A 502 O HOH A 606 1555 1555 2.04 LINK MG MG A 502 O HOH A 607 1555 1555 2.11 CISPEP 1 ASP A 211 SER A 212 0 2.80 SITE 1 AC1 26 PHE A 107 GLY A 108 SER A 109 GLY A 110 SITE 2 AC1 26 LYS A 111 THR A 112 GLN A 113 ARG A 158 SITE 3 AC1 26 GLN A 161 TYR A 301 ASP A 302 SER A 303 SITE 4 AC1 26 PRO A 304 HIS A 305 LEU A 306 PRO A 307 SITE 5 AC1 26 ASP A 308 THR A 316 GLU A 317 MG A 501 SITE 6 AC1 26 HOH A 602 HOH A 603 HOH A 616 HOH A 633 SITE 7 AC1 26 HOH A 641 HOH A 685 SITE 1 AC2 6 THR A 112 ADP A 401 HOH A 601 HOH A 602 SITE 2 AC2 6 HOH A 603 HOH A 608 SITE 1 AC3 6 GLN A 98 ASP A 246 HOH A 604 HOH A 605 SITE 2 AC3 6 HOH A 606 HOH A 607 SITE 1 AC4 4 THR A 6 LEU A 8 VAL A 11 GLU A 164 SITE 1 AC5 6 ARG A 230 W A 516 W A 517 W A 519 SITE 2 AC5 6 W A 521 HOH A 617 SITE 1 AC6 3 W A 516 W A 518 W A 522 SITE 1 AC7 6 ALA A 228 W A 515 W A 520 W A 521 SITE 2 AC7 6 W A 522 HOH A 721 SITE 1 AC8 3 W A 515 W A 518 W A 519 SITE 1 AC9 4 W A 513 W A 514 W A 518 W A 522 SITE 1 BC1 5 W A 511 W A 512 W A 521 W A 522 SITE 2 BC1 5 HOH A 721 SITE 1 BC2 4 ARG A 230 W A 511 W A 518 W A 519 SITE 1 BC3 4 W A 512 W A 514 W A 515 W A 517 SITE 1 BC4 7 ARG A 230 W A 511 W A 514 W A 517 SITE 2 BC4 7 W A 520 HOH A 617 HOH A 700 SITE 1 BC5 3 W A 513 W A 519 W A 521 SITE 1 BC6 5 W A 511 W A 513 W A 516 W A 520 SITE 2 BC6 5 HOH A 721 SITE 1 BC7 5 W A 512 W A 513 W A 515 W A 516 SITE 2 BC7 5 HOH A 721 SITE 1 BC8 4 W A 528 W A 529 W A 531 W A 533 SITE 1 BC9 3 W A 528 W A 529 W A 534 SITE 1 CC1 4 W A 527 W A 532 W A 533 W A 534 SITE 1 CC2 4 W A 527 W A 530 W A 531 W A 532 SITE 1 CC3 4 W A 525 W A 526 W A 530 W A 534 SITE 1 CC4 3 W A 523 W A 524 W A 534 SITE 1 CC5 4 W A 523 W A 524 W A 530 W A 531 SITE 1 CC6 3 W A 526 W A 527 W A 529 SITE 1 CC7 3 W A 523 W A 526 W A 529 SITE 1 CC8 3 W A 525 W A 526 W A 533 SITE 1 CC9 3 W A 523 W A 525 W A 532 SITE 1 DC1 4 W A 524 W A 525 W A 527 W A 528 CRYST1 83.160 83.160 106.850 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012025 0.006943 0.000000 0.00000 SCALE2 0.000000 0.013885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009359 0.00000