HEADER LIPID BINDING PROTEIN 26-JAN-09 3FZX TITLE CRYSTAL STRUCTURE OF A PUTATIVE EXPORTED PROTEIN WITH YMCC-LIKE FOLD TITLE 2 (BF2203) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.22 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE EXPORTED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-236; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: NCTC 9343; SOURCE 5 ATCC: 25285; SOURCE 6 GENE: BF2257, YP_211880.1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE EXPORTED PROTEIN WITH YMCC-LIKE FOLD, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 01-FEB-23 3FZX 1 REMARK SEQADV LINK REVDAT 5 24-JUL-19 3FZX 1 REMARK LINK REVDAT 4 25-OCT-17 3FZX 1 REMARK REVDAT 3 13-JUL-11 3FZX 1 VERSN REVDAT 2 28-JUL-10 3FZX 1 HEADER TITLE KEYWDS REVDAT 1 03-FEB-09 3FZX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE EXPORTED PROTEIN WITH JRNL TITL 2 YMCC-LIKE FOLD (YP_211880.1) FROM BACTEROIDES FRAGILIS NCTC JRNL TITL 3 9343 AT 2.22 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 15373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 768 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1065 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1685 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 51.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.19000 REMARK 3 B22 (A**2) : 1.19000 REMARK 3 B33 (A**2) : -1.79000 REMARK 3 B12 (A**2) : 0.60000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.510 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1751 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1171 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2378 ; 1.570 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2856 ; 0.962 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 221 ; 5.449 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;34.422 ;25.165 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 293 ;13.534 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.388 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 248 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2002 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 364 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1069 ; 1.743 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 434 ; 0.425 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1727 ; 3.315 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 682 ; 6.224 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 646 ; 8.472 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 236 REMARK 3 ORIGIN FOR THE GROUP (A): 52.7844 12.6835 6.7711 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.0160 REMARK 3 T33: 0.0154 T12: 0.0302 REMARK 3 T13: 0.0068 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.9093 L22: 1.6282 REMARK 3 L33: 1.5983 L12: -0.1153 REMARK 3 L13: -0.3273 L23: 0.5805 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.0077 S13: 0.0319 REMARK 3 S21: -0.0555 S22: -0.0082 S23: -0.0184 REMARK 3 S31: -0.1014 S32: -0.0765 S33: 0.0134 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. CALCIUM IONS MODELED ARE PRESENT IN CRYSTALLIZATION REMARK 3 CONDITIONS. REMARK 4 REMARK 4 3FZX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051247. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97982 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 29.074 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.01200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.20M CA(OAC)2, 30.0% PEG REMARK 280 400, 0.1M ACETATE PH 4.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 16.48667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.97333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.48667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.97333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 16.48667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 32.97333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 16.48667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.97333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -0.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 ALA A 20 REMARK 465 GLN A 21 REMARK 465 ASN A 22 REMARK 465 GLN A 23 REMARK 465 ASP A 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 25 SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 189 O HOH A 256 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 166 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 93 -129.30 57.16 REMARK 500 ASN A 154 69.89 -157.51 REMARK 500 ILE A 211 -47.64 -130.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 3 O REMARK 620 2 HOH A 14 O 76.1 REMARK 620 3 ASP A 139 OD1 153.5 82.3 REMARK 620 4 ASP A 139 OD2 155.9 125.2 50.3 REMARK 620 5 ASP A 140 OD1 101.4 87.8 92.9 71.4 REMARK 620 6 HOH A 254 O 74.8 143.6 117.2 88.5 119.1 REMARK 620 7 HOH A 285 O 78.3 134.2 128.1 78.2 60.9 58.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 137 O REMARK 620 2 ASP A 139 OD1 89.6 REMARK 620 3 HOH A 237 O 86.4 79.2 REMARK 620 4 HOH A 286 O 75.8 148.0 71.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 393247 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 20-236) WAS EXPRESSED WITH A REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED REMARK 999 WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED REMARK 999 BY THE TARGET SEQUENCE. DBREF 3FZX A 20 236 UNP Q5LD59 Q5LD59_BACFN 20 236 SEQADV 3FZX GLY A 19 UNP Q5LD59 EXPRESSION TAG SEQRES 1 A 218 GLY ALA GLN ASN GLN ASP CYS ALA PHE PHE PHE PRO ASN SEQRES 2 A 218 GLN GLU GLY GLU GLN ILE THR ARG ASN CYS TYR THR ALA SEQRES 3 A 218 ASP GLY LYS LEU THR ASN ILE LEU VAL TYR ARG VAL ASP SEQRES 4 A 218 GLN ALA TYR GLU TYR PRO SER GLY MSE GLU VAL VAL ALA SEQRES 5 A 218 ASN TYR THR PHE ALA ASP ALA ALA GLY LYS THR LEU ASN SEQRES 6 A 218 SER GLY GLN MSE VAL ALA ARG CYS SER ASP GLY ASN PHE SEQRES 7 A 218 SER MSE SER MSE GLY ASP VAL ALA THR PHE PRO THR ALA SEQRES 8 A 218 LEU ASN MSE MSE ASN ALA ASP VAL TYR MSE MSE GLY ASP SEQRES 9 A 218 LEU MSE ASN TYR PRO ASP ALA PHE SER ASN PRO MSE ASN SEQRES 10 A 218 PRO GLY ASP ASP ASP GLU PHE ASP ASP GLY THR LEU ARG SEQRES 11 A 218 LEU TYR GLN LYS GLY ASN LYS ASN ASN ARG ALA GLU ILE SEQRES 12 A 218 SER VAL PHE ASP ARG GLU PHE VAL THR THR GLU THR VAL SEQRES 13 A 218 ASN THR PRO ALA GLY ALA PHE TYR CYS THR LYS VAL LYS SEQRES 14 A 218 TYR GLU MSE ASN ILE TRP THR PRO LYS GLU THR ILE LYS SEQRES 15 A 218 GLY TYR GLY TYR GLU TRP TYR ALA PRO ASN ILE GLY ILE SEQRES 16 A 218 VAL ARG SER GLU GLN TYR ASN ASN LYS LYS GLU LEU GLN SEQRES 17 A 218 SER TYR SER VAL LEU GLU ARG ILE LYS LYS MODRES 3FZX MSE A 66 MET SELENOMETHIONINE MODRES 3FZX MSE A 87 MET SELENOMETHIONINE MODRES 3FZX MSE A 98 MET SELENOMETHIONINE MODRES 3FZX MSE A 100 MET SELENOMETHIONINE MODRES 3FZX MSE A 112 MET SELENOMETHIONINE MODRES 3FZX MSE A 113 MET SELENOMETHIONINE MODRES 3FZX MSE A 119 MET SELENOMETHIONINE MODRES 3FZX MSE A 120 MET SELENOMETHIONINE MODRES 3FZX MSE A 124 MET SELENOMETHIONINE MODRES 3FZX MSE A 134 MET SELENOMETHIONINE MODRES 3FZX MSE A 190 MET SELENOMETHIONINE HET MSE A 66 8 HET MSE A 87 8 HET MSE A 98 8 HET MSE A 100 8 HET MSE A 112 8 HET MSE A 113 8 HET MSE A 119 8 HET MSE A 120 13 HET MSE A 124 8 HET MSE A 134 8 HET MSE A 190 8 HET CA A 1 1 HET CA A 2 1 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *66(H2 O) HELIX 1 1 GLY A 101 THR A 105 5 5 HELIX 2 2 PHE A 106 MSE A 113 1 8 SHEET 1 A13 VAL A 117 GLY A 121 0 SHEET 2 A13 GLY A 145 GLN A 151 -1 O TYR A 150 N TYR A 118 SHEET 3 A13 ASN A 154 THR A 176 -1 O ILE A 161 N LEU A 147 SHEET 4 A13 GLY A 179 TRP A 193 -1 O LYS A 185 N THR A 170 SHEET 5 A13 THR A 198 ALA A 208 -1 O GLU A 205 N VAL A 186 SHEET 6 A13 GLY A 212 ASN A 220 -1 O TYR A 219 N TYR A 202 SHEET 7 A13 LEU A 225 LYS A 235 -1 O GLN A 226 N GLN A 218 SHEET 8 A13 GLN A 36 THR A 43 -1 N TYR A 42 O TYR A 228 SHEET 9 A13 LEU A 48 TYR A 62 -1 O LEU A 52 N ARG A 39 SHEET 10 A13 GLY A 65 ASP A 76 -1 O GLU A 67 N TYR A 60 SHEET 11 A13 THR A 81 SER A 92 -1 O LEU A 82 N PHE A 74 SHEET 12 A13 ASN A 95 SER A 99 -1 O SER A 97 N ARG A 90 SHEET 13 A13 LEU A 123 ASN A 125 -1 O MSE A 124 N MSE A 98 LINK C GLY A 65 N MSE A 66 1555 1555 1.31 LINK C MSE A 66 N GLU A 67 1555 1555 1.33 LINK C GLN A 86 N MSE A 87 1555 1555 1.32 LINK C MSE A 87 N VAL A 88 1555 1555 1.32 LINK C SER A 97 N MSE A 98 1555 1555 1.33 LINK C MSE A 98 N SER A 99 1555 1555 1.33 LINK C SER A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N GLY A 101 1555 1555 1.33 LINK C ASN A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N MSE A 113 1555 1555 1.34 LINK C MSE A 113 N ASN A 114 1555 1555 1.33 LINK C TYR A 118 N MSE A 119 1555 1555 1.31 LINK C MSE A 119 N MSE A 120 1555 1555 1.33 LINK C MSE A 120 N GLY A 121 1555 1555 1.32 LINK C LEU A 123 N MSE A 124 1555 1555 1.32 LINK C MSE A 124 N ASN A 125 1555 1555 1.32 LINK C PRO A 133 N MSE A 134 1555 1555 1.32 LINK C MSE A 134 N ASN A 135 1555 1555 1.32 LINK C GLU A 189 N MSE A 190 1555 1555 1.33 LINK C MSE A 190 N ASN A 191 1555 1555 1.33 LINK CA CA A 1 O HOH A 3 1555 1555 2.44 LINK CA CA A 1 O HOH A 14 1555 1555 2.34 LINK CA CA A 1 OD1 ASP A 139 1555 1555 2.62 LINK CA CA A 1 OD2 ASP A 139 1555 1555 2.44 LINK CA CA A 1 OD1 ASP A 140 1555 1555 2.91 LINK CA CA A 1 O HOH A 254 1555 1555 2.17 LINK CA CA A 1 O HOH A 285 1555 1555 2.85 LINK CA CA A 2 O GLY A 137 1555 1555 2.36 LINK CA CA A 2 OD1 ASP A 139 1555 1555 2.42 LINK CA CA A 2 O HOH A 237 1555 1555 2.25 LINK CA CA A 2 O HOH A 286 1555 1555 2.38 SITE 1 AC1 7 HOH A 3 HOH A 14 ASP A 139 ASP A 140 SITE 2 AC1 7 ASP A 165 HOH A 254 HOH A 285 SITE 1 AC2 6 HOH A 15 GLY A 137 ASP A 139 ASP A 165 SITE 2 AC2 6 HOH A 237 HOH A 286 CRYST1 143.740 143.740 49.460 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006957 0.004017 0.000000 0.00000 SCALE2 0.000000 0.008033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020218 0.00000