HEADER HYDROLASE 27-JAN-09 3G01 TITLE STRUCTURE OF GRC MUTANT E192R/E193G COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRANZYME C; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-247; COMPND 5 SYNONYM: CYTOTOXIC CELL PROTEASE 2, CCP2, B10; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HYDROLASE, CYTOLYSIS, PROTEASE, SERINE PROTEASE, ZYMOGEN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BUCKLE,D.KAISERMAN,J.C.WHISSTOCK REVDAT 5 01-NOV-23 3G01 1 REMARK REVDAT 4 10-NOV-21 3G01 1 SEQADV REVDAT 3 13-JUL-11 3G01 1 VERSN REVDAT 2 12-MAY-09 3G01 1 JRNL REVDAT 1 17-MAR-09 3G01 0 JRNL AUTH D.KAISERMAN,A.M.BUCKLE,P.VAN DAMME,J.A.IRVING,R.H.P.LAW, JRNL AUTH 2 A.Y.MATTHEWS,T.BASHTANNYK-PUHALOVICH,C.LANGENDORF, JRNL AUTH 3 P.THOMPSON,J.VANDEKERCKHOVE,K.GEVAERT,J.C.WHISSTOCK,P.I.BIRD JRNL TITL STRUCTURE OF GRANZYME C REVEALS AN UNUSUAL MECHANISM OF JRNL TITL 2 PROTEASE AUTOINHIBITION JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 5587 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19299505 JRNL DOI 10.1073/PNAS.0811968106 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 20087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 992 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1425 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.68000 REMARK 3 B22 (A**2) : 3.68000 REMARK 3 B33 (A**2) : -5.52000 REMARK 3 B12 (A**2) : 1.84000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.367 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.739 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3125 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4257 ; 1.345 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 413 ; 8.006 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;29.606 ;23.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 442 ;15.190 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;11.365 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2378 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2075 ; 1.500 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3293 ; 2.805 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1050 ; 3.952 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 964 ; 5.635 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 21 A 222 1 REMARK 3 1 B 21 B 222 1 REMARK 3 2 A 225 A 247 1 REMARK 3 2 B 225 B 247 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1522 ; 0.020 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 1522 ; 0.050 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1800 -41.4030 -6.5190 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.1209 REMARK 3 T33: 0.1754 T12: 0.0454 REMARK 3 T13: -0.0164 T23: 0.0770 REMARK 3 L TENSOR REMARK 3 L11: 1.0205 L22: 1.8560 REMARK 3 L33: 5.7428 L12: -0.3870 REMARK 3 L13: 0.0628 L23: -0.5907 REMARK 3 S TENSOR REMARK 3 S11: -0.1003 S12: 0.0367 S13: -0.0361 REMARK 3 S21: 0.0489 S22: 0.0978 S23: -0.0132 REMARK 3 S31: -0.3419 S32: -0.0547 S33: 0.0025 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 21 B 247 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4200 -17.5760 -27.9310 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.0711 REMARK 3 T33: 0.1756 T12: 0.0162 REMARK 3 T13: -0.0633 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 1.2240 L22: 1.6946 REMARK 3 L33: 5.6910 L12: -0.5481 REMARK 3 L13: 0.5005 L23: -0.3461 REMARK 3 S TENSOR REMARK 3 S11: 0.0861 S12: -0.0324 S13: 0.0381 REMARK 3 S21: -0.0634 S22: -0.0954 S23: 0.0257 REMARK 3 S31: 0.2054 S32: 0.2446 S33: 0.0093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3G01 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051251. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20089 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.496 REMARK 200 RESOLUTION RANGE LOW (A) : 61.812 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 9.3620 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.71600 REMARK 200 R SYM FOR SHELL (I) : 0.71600 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1A1U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.25G/ML PEG REMARK 280 3350, 0.1M SODIUM CACODYLATE, PH 6.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.05700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 138.11400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.58550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 172.64250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.52850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 152 REMARK 465 PRO A 153 REMARK 465 ASP A 154 REMARK 465 GLY A 155 REMARK 465 GLU A 156 REMARK 465 PHE A 157 REMARK 465 PRO A 158 REMARK 465 SER A 193 REMARK 465 LYS A 194 REMARK 465 ILE A 195 REMARK 465 LYS A 196 REMARK 465 GLY A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 PHE A 200 REMARK 465 ARG A 201 REMARK 465 THR B 152 REMARK 465 PRO B 153 REMARK 465 ASP B 154 REMARK 465 GLY B 155 REMARK 465 GLU B 156 REMARK 465 PHE B 157 REMARK 465 PRO B 158 REMARK 465 SER B 193 REMARK 465 LYS B 194 REMARK 465 ILE B 195 REMARK 465 LYS B 196 REMARK 465 GLY B 197 REMARK 465 ALA B 198 REMARK 465 SER B 199 REMARK 465 PHE B 200 REMARK 465 ARG B 201 REMARK 465 THR B 223 REMARK 465 ASP B 224 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 21 O CD1 REMARK 470 ILE A 22 CD1 REMARK 470 ASN A 25 CG OD1 ND2 REMARK 470 ILE A 27 CD1 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LYS A 46 CE NZ REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS A 58 CE NZ REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 SER A 70 OG REMARK 470 ILE A 80 CD1 REMARK 470 LYS A 81 CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 ILE A 89 CD1 REMARK 470 ILE A 90 CD1 REMARK 470 ILE A 96 CD1 REMARK 470 LYS A 114 CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 138 CD CE NZ REMARK 470 VAL A 151 CG1 CG2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 GLN A 179 CG CD OE1 NE2 REMARK 470 ASP A 192 CG OD1 OD2 REMARK 470 ASP A 203 CG OD1 OD2 REMARK 470 LYS A 211 CD CE NZ REMARK 470 ARG A 212 CZ NH1 NH2 REMARK 470 THR A 223 OG1 CG2 REMARK 470 ASP A 224 CG OD1 OD2 REMARK 470 SER A 226 OG REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 HIS A 247 O REMARK 470 ILE B 21 O CD1 REMARK 470 ILE B 22 CD1 REMARK 470 ASN B 25 CG OD1 ND2 REMARK 470 ILE B 27 CD1 REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 LYS B 46 CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LYS B 58 CE NZ REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 470 SER B 70 OG REMARK 470 ILE B 80 CD1 REMARK 470 LYS B 81 CE NZ REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 ILE B 89 CD1 REMARK 470 ILE B 90 CD1 REMARK 470 ILE B 96 CD1 REMARK 470 LYS B 114 CD CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 ARG B 121 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 133 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 138 CD CE NZ REMARK 470 VAL B 151 CG1 CG2 REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 GLN B 179 CG CD OE1 NE2 REMARK 470 ASP B 192 CG OD1 OD2 REMARK 470 ASP B 203 CG OD1 OD2 REMARK 470 LYS B 211 CD CE NZ REMARK 470 ARG B 212 CZ NH1 NH2 REMARK 470 SER B 226 OG REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 HIS B 247 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 179 113.15 -18.65 REMARK 500 SER A 180 -37.86 100.68 REMARK 500 ASP A 203 -37.62 68.13 REMARK 500 SER A 219 -62.89 -120.85 REMARK 500 GLN B 179 113.42 -18.25 REMARK 500 SER B 180 -38.73 100.46 REMARK 500 ASP B 203 -39.89 69.56 REMARK 500 SER B 219 -61.80 -121.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 225 SER A 226 -121.44 REMARK 500 SER B 204 GLY B 205 -51.45 REMARK 500 GLY B 225 SER B 226 -61.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FZZ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THIS PROTEIN IS BASED ON REFERENCE 3 OF UNIPROTKB/ REMARK 999 SWISS-PROT P08882 (GRAC_MOUSE). DBREF 3G01 A 21 247 UNP P08882 GRAC_MOUSE 21 247 DBREF 3G01 B 21 247 UNP P08882 GRAC_MOUSE 21 247 SEQADV 3G01 ARG A 69 UNP P08882 SER 69 SEE REMARK 999 SEQADV 3G01 ARG A 201 UNP P08882 GLU 201 ENGINEERED MUTATION SEQADV 3G01 GLY A 202 UNP P08882 GLU 202 ENGINEERED MUTATION SEQADV 3G01 ARG B 69 UNP P08882 SER 69 SEE REMARK 999 SEQADV 3G01 ARG B 201 UNP P08882 GLU 201 ENGINEERED MUTATION SEQADV 3G01 GLY B 202 UNP P08882 GLU 202 ENGINEERED MUTATION SEQRES 1 A 227 ILE ILE GLY GLY ASN GLU ILE SER PRO HIS SER ARG PRO SEQRES 2 A 227 TYR MET ALA TYR TYR GLU PHE LEU LYS VAL GLY GLY LYS SEQRES 3 A 227 LYS MET PHE CYS GLY GLY PHE LEU VAL ARG ASP LYS PHE SEQRES 4 A 227 VAL LEU THR ALA ALA HIS CYS LYS GLY ARG SER MET THR SEQRES 5 A 227 VAL THR LEU GLY ALA HIS ASN ILE LYS ALA LYS GLU GLU SEQRES 6 A 227 THR GLN GLN ILE ILE PRO VAL ALA LYS ALA ILE PRO HIS SEQRES 7 A 227 PRO ASP TYR ASN PRO ASP ASP ARG SER ASN ASP ILE MET SEQRES 8 A 227 LEU LEU LYS LEU VAL ARG ASN ALA LYS ARG THR ARG ALA SEQRES 9 A 227 VAL ARG PRO LEU ASN LEU PRO ARG ARG ASN ALA HIS VAL SEQRES 10 A 227 LYS PRO GLY ASP GLU CYS TYR VAL ALA GLY TRP GLY LYS SEQRES 11 A 227 VAL THR PRO ASP GLY GLU PHE PRO LYS THR LEU HIS GLU SEQRES 12 A 227 VAL LYS LEU THR VAL GLN LYS ASP GLN VAL CYS GLU SER SEQRES 13 A 227 GLN PHE GLN SER SER TYR ASN ARG ALA ASN GLU ILE CYS SEQRES 14 A 227 VAL GLY ASP SER LYS ILE LYS GLY ALA SER PHE ARG GLY SEQRES 15 A 227 ASP SER GLY GLY PRO LEU VAL CYS LYS ARG ALA ALA ALA SEQRES 16 A 227 GLY ILE VAL SER TYR GLY GLN THR ASP GLY SER ALA PRO SEQRES 17 A 227 GLN VAL PHE THR ARG VAL LEU SER PHE VAL SER TRP ILE SEQRES 18 A 227 LYS LYS THR MET LYS HIS SEQRES 1 B 227 ILE ILE GLY GLY ASN GLU ILE SER PRO HIS SER ARG PRO SEQRES 2 B 227 TYR MET ALA TYR TYR GLU PHE LEU LYS VAL GLY GLY LYS SEQRES 3 B 227 LYS MET PHE CYS GLY GLY PHE LEU VAL ARG ASP LYS PHE SEQRES 4 B 227 VAL LEU THR ALA ALA HIS CYS LYS GLY ARG SER MET THR SEQRES 5 B 227 VAL THR LEU GLY ALA HIS ASN ILE LYS ALA LYS GLU GLU SEQRES 6 B 227 THR GLN GLN ILE ILE PRO VAL ALA LYS ALA ILE PRO HIS SEQRES 7 B 227 PRO ASP TYR ASN PRO ASP ASP ARG SER ASN ASP ILE MET SEQRES 8 B 227 LEU LEU LYS LEU VAL ARG ASN ALA LYS ARG THR ARG ALA SEQRES 9 B 227 VAL ARG PRO LEU ASN LEU PRO ARG ARG ASN ALA HIS VAL SEQRES 10 B 227 LYS PRO GLY ASP GLU CYS TYR VAL ALA GLY TRP GLY LYS SEQRES 11 B 227 VAL THR PRO ASP GLY GLU PHE PRO LYS THR LEU HIS GLU SEQRES 12 B 227 VAL LYS LEU THR VAL GLN LYS ASP GLN VAL CYS GLU SER SEQRES 13 B 227 GLN PHE GLN SER SER TYR ASN ARG ALA ASN GLU ILE CYS SEQRES 14 B 227 VAL GLY ASP SER LYS ILE LYS GLY ALA SER PHE ARG GLY SEQRES 15 B 227 ASP SER GLY GLY PRO LEU VAL CYS LYS ARG ALA ALA ALA SEQRES 16 B 227 GLY ILE VAL SER TYR GLY GLN THR ASP GLY SER ALA PRO SEQRES 17 B 227 GLN VAL PHE THR ARG VAL LEU SER PHE VAL SER TRP ILE SEQRES 18 B 227 LYS LYS THR MET LYS HIS FORMUL 3 HOH *28(H2 O) HELIX 1 1 LYS A 170 GLN A 179 1 10 HELIX 2 2 PHE A 237 HIS A 247 1 11 HELIX 3 3 LYS B 170 GLN B 179 1 10 HELIX 4 4 PHE B 237 HIS B 247 1 11 SHEET 1 A 8 ASN A 25 GLU A 26 0 SHEET 2 A 8 HIS A 162 VAL A 168 -1 O GLU A 163 N ASN A 25 SHEET 3 A 8 GLU A 187 GLY A 191 -1 O GLY A 191 N THR A 167 SHEET 4 A 8 GLN A 229 ARG A 233 -1 O GLN A 229 N VAL A 190 SHEET 5 A 8 ALA A 213 TYR A 220 -1 N TYR A 220 O VAL A 230 SHEET 6 A 8 PRO A 207 CYS A 210 -1 N LEU A 208 O ALA A 215 SHEET 7 A 8 GLU A 142 GLY A 147 -1 N TYR A 144 O VAL A 209 SHEET 8 A 8 HIS A 162 VAL A 168 -1 O LEU A 166 N CYS A 143 SHEET 1 B 7 MET A 35 LEU A 41 0 SHEET 2 B 7 LYS A 47 ARG A 56 -1 O MET A 48 N PHE A 40 SHEET 3 B 7 PHE A 59 THR A 62 -1 O LEU A 61 N PHE A 53 SHEET 4 B 7 MET A 111 LEU A 115 -1 O LEU A 113 N VAL A 60 SHEET 5 B 7 GLN A 88 PRO A 97 -1 N ILE A 96 O LEU A 112 SHEET 6 B 7 ARG A 69 LEU A 75 -1 N VAL A 73 O ILE A 90 SHEET 7 B 7 MET A 35 LEU A 41 -1 N LEU A 41 O ARG A 69 SHEET 1 C 8 ASN B 25 GLU B 26 0 SHEET 2 C 8 HIS B 162 VAL B 168 -1 O GLU B 163 N ASN B 25 SHEET 3 C 8 GLU B 187 GLY B 191 -1 O GLY B 191 N THR B 167 SHEET 4 C 8 GLN B 229 ARG B 233 -1 O PHE B 231 N ILE B 188 SHEET 5 C 8 ALA B 213 TYR B 220 -1 N TYR B 220 O VAL B 230 SHEET 6 C 8 PRO B 207 CYS B 210 -1 N LEU B 208 O ALA B 215 SHEET 7 C 8 GLU B 142 GLY B 147 -1 N TYR B 144 O VAL B 209 SHEET 8 C 8 HIS B 162 VAL B 168 -1 O LEU B 166 N CYS B 143 SHEET 1 D 7 MET B 35 LEU B 41 0 SHEET 2 D 7 LYS B 47 ARG B 56 -1 O MET B 48 N PHE B 40 SHEET 3 D 7 PHE B 59 THR B 62 -1 O LEU B 61 N PHE B 53 SHEET 4 D 7 MET B 111 LEU B 115 -1 O LEU B 113 N VAL B 60 SHEET 5 D 7 GLN B 88 PRO B 97 -1 N ILE B 96 O LEU B 112 SHEET 6 D 7 ARG B 69 LEU B 75 -1 N VAL B 73 O ILE B 90 SHEET 7 D 7 MET B 35 LEU B 41 -1 N LEU B 41 O ARG B 69 SSBOND 1 CYS A 50 CYS A 66 1555 1555 2.06 SSBOND 2 CYS A 143 CYS A 210 1555 1555 2.06 SSBOND 3 CYS A 174 CYS A 189 1555 1555 2.08 SSBOND 4 CYS B 50 CYS B 66 1555 1555 2.06 SSBOND 5 CYS B 143 CYS B 210 1555 1555 2.06 SSBOND 6 CYS B 174 CYS B 189 1555 1555 2.07 CISPEP 1 GLY A 202 ASP A 203 0 3.27 CISPEP 2 THR A 223 ASP A 224 0 3.20 CISPEP 3 ALA A 227 PRO A 228 0 -9.56 CISPEP 4 GLY B 202 ASP B 203 0 3.40 CISPEP 5 ALA B 227 PRO B 228 0 -9.07 CRYST1 71.375 71.375 207.171 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014011 0.008089 0.000000 0.00000 SCALE2 0.000000 0.016178 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004827 0.00000