HEADER OXIDOREDUCTASE 29-JAN-09 3G14 TITLE CRYSTAL STRUCTURE OF NITROREDUCTASE FAMILY PROTEIN (YP_877874.1) FROM TITLE 2 CLOSTRIDIUM NOVYI NT AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROREDUCTASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM NOVYI; SOURCE 3 ORGANISM_TAXID: 386415; SOURCE 4 STRAIN: NT; SOURCE 5 GENE: NOXC, NT01CX_1801, YP_877874.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS YP_877874.1, NITROREDUCTASE FAMILY PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3G14 1 REMARK SEQADV REVDAT 4 24-JUL-19 3G14 1 REMARK LINK REVDAT 3 01-NOV-17 3G14 1 REMARK REVDAT 2 13-JUL-11 3G14 1 VERSN REVDAT 1 17-FEB-09 3G14 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF NITROREDUCTASE FAMILY PROTEIN JRNL TITL 2 (YP_877874.1) FROM CLOSTRIDIUM NOVYI NT AT 1.75 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 34929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1754 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2425 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2775 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.021 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2914 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1980 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3936 ; 1.462 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4902 ; 0.937 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 365 ; 5.420 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;30.611 ;25.893 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 558 ;13.664 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ; 9.369 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3159 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 515 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 591 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2029 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1450 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1404 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 195 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.124 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2032 ; 2.027 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 721 ; 0.536 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2954 ; 2.682 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1219 ; 5.128 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 982 ; 6.891 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 185 REMARK 3 ORIGIN FOR THE GROUP (A): 25.4800 21.2511 15.3108 REMARK 3 T TENSOR REMARK 3 T11: -0.0311 T22: -0.0323 REMARK 3 T33: -0.0406 T12: 0.0091 REMARK 3 T13: -0.0069 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.2882 L22: 0.6265 REMARK 3 L33: 0.6678 L12: 0.0125 REMARK 3 L13: -0.2534 L23: 0.0935 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: -0.1152 S13: -0.1197 REMARK 3 S21: 0.0317 S22: -0.0097 S23: -0.0125 REMARK 3 S31: 0.0366 S32: 0.0441 S33: 0.0278 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 186 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6752 32.2270 15.3728 REMARK 3 T TENSOR REMARK 3 T11: -0.0257 T22: -0.0263 REMARK 3 T33: -0.0439 T12: 0.0123 REMARK 3 T13: 0.0008 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.4157 L22: 0.6293 REMARK 3 L33: 0.7167 L12: 0.0129 REMARK 3 L13: 0.3619 L23: -0.1045 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: -0.1418 S13: 0.1395 REMARK 3 S21: 0.0499 S22: -0.0110 S23: 0.0216 REMARK 3 S31: -0.0455 S32: -0.0667 S33: 0.0363 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. SULFATE REMARK 3 (SO4), ACETATE (ACT) IONS AND GLYCEROL (GOL) MOLECULES FROM REMARK 3 CRYSTALLIZATION CONDITION WERE MODELED. 5. RESIDUES 156-164 OF A REMARK 3 CHAIN AND 157-163 OF B CHAIN WERE NOT VISIBLE IN THE ELECTRON REMARK 3 DENSITIES. THEY WERE UNMODELED. REMARK 4 REMARK 4 3G14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1000051290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.29 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97876, 0.97826 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34941 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 28.194 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.160M AMMONIUM SULFATE, REMARK 280 22.3% PEG 4000, 20.0% GLYCEROL, 0.1M SODIUM ACETATE PH 4.29, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.47500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 156 REMARK 465 ALA A 157 REMARK 465 GLU A 158 REMARK 465 ASP A 159 REMARK 465 GLU A 160 REMARK 465 PRO A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 PRO A 164 REMARK 465 VAL A 186 REMARK 465 LYS A 187 REMARK 465 ILE A 188 REMARK 465 LEU A 189 REMARK 465 GLU A 190 REMARK 465 LYS A 191 REMARK 465 ASN A 192 REMARK 465 GLY B 0 REMARK 465 ALA B 157 REMARK 465 GLU B 158 REMARK 465 ASP B 159 REMARK 465 GLU B 160 REMARK 465 PRO B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 LYS B 187 REMARK 465 ILE B 188 REMARK 465 LEU B 189 REMARK 465 GLU B 190 REMARK 465 LYS B 191 REMARK 465 ASN B 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 28 CE NZ REMARK 470 LYS A 165 CD CE NZ REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 ASN A 185 CG OD1 ND2 REMARK 470 LYS B 165 CE NZ REMARK 470 GLU B 170 CG CD OE1 OE2 REMARK 470 ASN B 185 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 175 -31.02 64.16 REMARK 500 THR B 19 126.46 -36.86 REMARK 500 ASN B 41 28.30 49.84 REMARK 500 GLU B 64 62.75 -116.07 REMARK 500 ASP B 175 -33.85 69.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 193 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 194 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 196 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 197 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 391675 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3G14 A 1 192 UNP A0PZS2 A0PZS2_CLONN 1 192 DBREF 3G14 B 1 192 UNP A0PZS2 A0PZS2_CLONN 1 192 SEQADV 3G14 GLY A 0 UNP A0PZS2 EXPRESSION TAG SEQADV 3G14 GLY B 0 UNP A0PZS2 EXPRESSION TAG SEQRES 1 A 193 GLY MSE GLU PHE TYR GLU VAL ILE LYS LYS ARG LYS SER SEQRES 2 A 193 ILE LYS LYS PHE GLU GLN THR ALA ILE ASP ARG ASP LYS SEQRES 3 A 193 LEU LEU LYS ILE ILE ASP MSE ALA MSE ARG ALA PRO SER SEQRES 4 A 193 TRP LYS ASN LYS THR PRO TYR LYS PHE ILE VAL VAL GLU SEQRES 5 A 193 SER ASP LYS LEU LYS LEU ASP ILE ALA ASN ALA ILE GLU SEQRES 6 A 193 ASN LYS THR SER ALA ALA SER GLU ALA VAL LEU ASN SER SEQRES 7 A 193 PRO MSE THR ILE VAL ALA VAL ALA ASN PRO GLU GLU SER SEQRES 8 A 193 GLY ASP VAL SER GLY LYS GLU ILE TYR LEU ILE ASP THR SEQRES 9 A 193 ALA ILE ALA MSE GLU HIS ILE VAL LEU GLY ALA THR ASP SEQRES 10 A 193 GLU GLY TYR GLY THR CYS TRP ILE ALA ALA PHE ASN GLU SEQRES 11 A 193 ASN LYS ILE LYS GLU ALA LEU LYS ILE PRO ASP ASN LEU SEQRES 12 A 193 ARG VAL VAL ALA LEU THR PRO LEU GLY VAL PRO LYS ASP SEQRES 13 A 193 SER ALA GLU ASP GLU PRO HIS HIS PRO LYS LYS ASP MSE SEQRES 14 A 193 ASP GLU TYR LEU TYR ILE ASP LYS TRP GLY THR SER PHE SEQRES 15 A 193 MSE GLU SER ASN VAL LYS ILE LEU GLU LYS ASN SEQRES 1 B 193 GLY MSE GLU PHE TYR GLU VAL ILE LYS LYS ARG LYS SER SEQRES 2 B 193 ILE LYS LYS PHE GLU GLN THR ALA ILE ASP ARG ASP LYS SEQRES 3 B 193 LEU LEU LYS ILE ILE ASP MSE ALA MSE ARG ALA PRO SER SEQRES 4 B 193 TRP LYS ASN LYS THR PRO TYR LYS PHE ILE VAL VAL GLU SEQRES 5 B 193 SER ASP LYS LEU LYS LEU ASP ILE ALA ASN ALA ILE GLU SEQRES 6 B 193 ASN LYS THR SER ALA ALA SER GLU ALA VAL LEU ASN SER SEQRES 7 B 193 PRO MSE THR ILE VAL ALA VAL ALA ASN PRO GLU GLU SER SEQRES 8 B 193 GLY ASP VAL SER GLY LYS GLU ILE TYR LEU ILE ASP THR SEQRES 9 B 193 ALA ILE ALA MSE GLU HIS ILE VAL LEU GLY ALA THR ASP SEQRES 10 B 193 GLU GLY TYR GLY THR CYS TRP ILE ALA ALA PHE ASN GLU SEQRES 11 B 193 ASN LYS ILE LYS GLU ALA LEU LYS ILE PRO ASP ASN LEU SEQRES 12 B 193 ARG VAL VAL ALA LEU THR PRO LEU GLY VAL PRO LYS ASP SEQRES 13 B 193 SER ALA GLU ASP GLU PRO HIS HIS PRO LYS LYS ASP MSE SEQRES 14 B 193 ASP GLU TYR LEU TYR ILE ASP LYS TRP GLY THR SER PHE SEQRES 15 B 193 MSE GLU SER ASN VAL LYS ILE LEU GLU LYS ASN MODRES 3G14 MSE A 1 MET SELENOMETHIONINE MODRES 3G14 MSE A 32 MET SELENOMETHIONINE MODRES 3G14 MSE A 34 MET SELENOMETHIONINE MODRES 3G14 MSE A 79 MET SELENOMETHIONINE MODRES 3G14 MSE A 107 MET SELENOMETHIONINE MODRES 3G14 MSE A 168 MET SELENOMETHIONINE MODRES 3G14 MSE A 182 MET SELENOMETHIONINE MODRES 3G14 MSE B 1 MET SELENOMETHIONINE MODRES 3G14 MSE B 32 MET SELENOMETHIONINE MODRES 3G14 MSE B 34 MET SELENOMETHIONINE MODRES 3G14 MSE B 79 MET SELENOMETHIONINE MODRES 3G14 MSE B 107 MET SELENOMETHIONINE MODRES 3G14 MSE B 168 MET SELENOMETHIONINE MODRES 3G14 MSE B 182 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 32 8 HET MSE A 34 8 HET MSE A 79 8 HET MSE A 107 8 HET MSE A 168 8 HET MSE A 182 16 HET MSE B 1 8 HET MSE B 32 8 HET MSE B 34 8 HET MSE B 79 8 HET MSE B 107 8 HET MSE B 168 8 HET MSE B 182 8 HET SO4 A 193 5 HET ACT A 194 4 HET SO4 B 193 5 HET ACT B 194 4 HET ACT B 195 4 HET ACT B 196 4 HET GOL B 197 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 ACT 4(C2 H3 O2 1-) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *275(H2 O) HELIX 1 1 GLU A 2 ARG A 10 1 9 HELIX 2 2 ASP A 22 ARG A 35 1 14 HELIX 3 3 SER A 38 LYS A 42 5 5 HELIX 4 4 SER A 52 ILE A 63 1 12 HELIX 5 5 SER A 68 SER A 77 1 10 HELIX 6 6 ILE A 98 GLU A 117 1 20 HELIX 7 7 ASN A 128 LYS A 137 1 10 HELIX 8 8 ASP A 167 GLU A 170 5 4 HELIX 9 9 GLU B 2 ARG B 10 1 9 HELIX 10 10 ASP B 22 ARG B 35 1 14 HELIX 11 11 SER B 38 LYS B 42 5 5 HELIX 12 12 SER B 52 ILE B 63 1 12 HELIX 13 13 SER B 68 SER B 77 1 10 HELIX 14 14 ILE B 98 GLU B 117 1 20 HELIX 15 15 ASN B 128 LYS B 137 1 10 HELIX 16 16 ASP B 167 GLU B 170 5 4 SHEET 1 A 4 ARG A 143 LEU A 150 0 SHEET 2 A 4 MSE A 79 ALA A 85 -1 N ILE A 81 O THR A 148 SHEET 3 A 4 TYR A 45 VAL A 50 -1 N VAL A 50 O THR A 80 SHEET 4 A 4 LEU A 172 ILE A 174 1 O TYR A 173 N VAL A 49 SHEET 1 B 2 ASP A 92 VAL A 93 0 SHEET 2 B 2 LYS A 96 GLU A 97 -1 O LYS A 96 N VAL A 93 SHEET 1 C 4 ARG B 143 LEU B 150 0 SHEET 2 C 4 MSE B 79 ALA B 85 -1 N ILE B 81 O THR B 148 SHEET 3 C 4 TYR B 45 VAL B 50 -1 N VAL B 50 O THR B 80 SHEET 4 C 4 LEU B 172 ILE B 174 1 O TYR B 173 N VAL B 49 SHEET 1 D 2 ASP B 92 VAL B 93 0 SHEET 2 D 2 LYS B 96 GLU B 97 -1 O LYS B 96 N VAL B 93 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C ASP A 31 N MSE A 32 1555 1555 1.33 LINK C MSE A 32 N ALA A 33 1555 1555 1.32 LINK C ALA A 33 N MSE A 34 1555 1555 1.34 LINK C MSE A 34 N ARG A 35 1555 1555 1.33 LINK C PRO A 78 N MSE A 79 1555 1555 1.34 LINK C MSE A 79 N THR A 80 1555 1555 1.31 LINK C ALA A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N GLU A 108 1555 1555 1.33 LINK C ASP A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N ASP A 169 1555 1555 1.35 LINK C PHE A 181 N AMSE A 182 1555 1555 1.33 LINK C PHE A 181 N BMSE A 182 1555 1555 1.34 LINK C AMSE A 182 N GLU A 183 1555 1555 1.33 LINK C BMSE A 182 N GLU A 183 1555 1555 1.33 LINK C MSE B 1 N GLU B 2 1555 1555 1.33 LINK C ASP B 31 N MSE B 32 1555 1555 1.32 LINK C MSE B 32 N ALA B 33 1555 1555 1.32 LINK C ALA B 33 N MSE B 34 1555 1555 1.33 LINK C MSE B 34 N ARG B 35 1555 1555 1.33 LINK C PRO B 78 N MSE B 79 1555 1555 1.33 LINK C MSE B 79 N THR B 80 1555 1555 1.33 LINK C ALA B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N GLU B 108 1555 1555 1.34 LINK C ASP B 167 N MSE B 168 1555 1555 1.34 LINK C MSE B 168 N ASP B 169 1555 1555 1.34 LINK C PHE B 181 N MSE B 182 1555 1555 1.32 LINK C MSE B 182 N GLU B 183 1555 1555 1.33 SITE 1 AC1 5 ARG A 10 LYS A 11 SER A 12 ASN B 41 SITE 2 AC1 5 HOH B 280 SITE 1 AC2 6 TRP A 39 ASP A 102 ILE A 105 HOH A 196 SITE 2 AC2 6 HOH A 221 TRP B 123 SITE 1 AC3 5 ASN A 41 HOH A 288 ARG B 10 LYS B 11 SITE 2 AC3 5 SER B 12 SITE 1 AC4 3 GLU B 134 ILE B 138 ASP B 140 SITE 1 AC5 4 GLU A 2 LYS B 28 ASP B 116 GLU B 117 SITE 1 AC6 3 SER B 38 TRP B 39 ASP B 102 SITE 1 AC7 5 ASP B 31 MSE B 34 ARG B 35 LYS B 165 SITE 2 AC7 5 LYS B 166 CRYST1 58.350 44.950 66.960 90.00 93.72 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017138 0.000000 0.001114 0.00000 SCALE2 0.000000 0.022247 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014966 0.00000 HETATM 1 N MSE A 1 19.216 26.208 35.225 1.00 28.58 N HETATM 2 CA MSE A 1 18.782 27.581 34.836 1.00 24.65 C HETATM 3 C MSE A 1 17.309 27.594 34.447 1.00 21.87 C HETATM 4 O MSE A 1 16.802 26.629 33.838 1.00 20.85 O HETATM 5 CB MSE A 1 19.588 28.086 33.640 1.00 23.25 C HETATM 6 CG MSE A 1 21.083 28.160 33.865 1.00 26.16 C HETATM 7 SE MSE A 1 21.944 29.037 32.391 0.75 25.40 SE HETATM 8 CE MSE A 1 21.043 30.713 32.431 1.00 16.66 C