HEADER LIGASE 30-JAN-09 3G1Z TITLE STRUCTURE OF IDP01693/YJEA, A POTENTIAL T-RNA SYNTHETASE FROM TITLE 2 SALMONELLA TYPHIMURIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE LYSYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LYSINE--TRNA LIGASE, LYSRS, GX; COMPND 5 EC: 6.1.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: GENX, POXA, STM4344, YJEA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TVLIC KEYWDS T-RNA SYNTHETASE, DRUG TARGET, SALMONELLA TYPHIMURIUM, NUCLEOTIDE, KEYWDS 2 AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, LIGASE, NUCLEOTIDE-BINDING, KEYWDS 3 PROTEIN BIOSYNTHESIS, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS OF INFECTIOUS DISEASES, CSGID EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,E.EVDOKIMOVA,M.KUDRITSKA,M.E.CUFF,A.M.EDWARDS, AUTHOR 2 W.F.ANDERSON,A.SAVCHENKO,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 5 03-APR-24 3G1Z 1 REMARK REVDAT 4 21-FEB-24 3G1Z 1 REMARK SEQADV REVDAT 3 12-OCT-11 3G1Z 1 JRNL REVDAT 2 13-JUL-11 3G1Z 1 VERSN REVDAT 1 10-MAR-09 3G1Z 0 JRNL AUTH W.W.NAVARRE,S.B.ZOU,H.ROY,J.L.XIE,A.SAVCHENKO,A.SINGER, JRNL AUTH 2 E.EDVOKIMOVA,L.R.PROST,R.KUMAR,M.IBBA,F.C.FANG JRNL TITL POXA, YJEK, AND ELONGATION FACTOR P COORDINATELY MODULATE JRNL TITL 2 VIRULENCE AND DRUG RESISTANCE IN SALMONELLA ENTERICA. JRNL REF MOL.CELL V. 39 209 2010 JRNL REFN ISSN 1097-2765 JRNL PMID 20670890 JRNL DOI 10.1016/J.MOLCEL.2010.06.021 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 43960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2339 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3318 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5012 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 645 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.615 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5429 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7402 ; 1.436 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 673 ; 5.984 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;38.913 ;23.865 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 917 ;15.588 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;17.112 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 795 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4261 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2948 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3730 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 597 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.147 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3376 ; 0.724 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5302 ; 1.167 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2293 ; 1.995 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2095 ; 3.000 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 325 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0249 8.5030 -20.5215 REMARK 3 T TENSOR REMARK 3 T11: 0.0001 T22: -0.0174 REMARK 3 T33: -0.0479 T12: -0.0164 REMARK 3 T13: 0.0033 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.4289 L22: 0.7147 REMARK 3 L33: 0.2696 L12: 0.2646 REMARK 3 L13: -0.0176 L23: 0.0147 REMARK 3 S TENSOR REMARK 3 S11: 0.0673 S12: -0.1038 S13: 0.0381 REMARK 3 S21: 0.1163 S22: -0.0345 S23: -0.0506 REMARK 3 S31: -0.0330 S32: 0.0150 S33: -0.0327 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 325 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5090 -20.5653 -21.0228 REMARK 3 T TENSOR REMARK 3 T11: -0.0044 T22: -0.0116 REMARK 3 T33: -0.0371 T12: -0.0253 REMARK 3 T13: 0.0146 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.4539 L22: 0.7604 REMARK 3 L33: 0.3243 L12: 0.3945 REMARK 3 L13: 0.2717 L23: 0.0747 REMARK 3 S TENSOR REMARK 3 S11: 0.0871 S12: -0.0911 S13: -0.0885 REMARK 3 S21: 0.1298 S22: -0.0765 S23: 0.0152 REMARK 3 S31: 0.0676 S32: -0.0618 S33: -0.0105 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SWISS-MODEL (HTTP://SWISSMODEL.EXPASY.ORG/SWISS REMARK 200 -MODEL.HTML) MODEL USING THE INPUT PROTEIN SEQUENCE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM/POTASSIUM DIHYDROGEN REMARK 280 PHOSPHATE, 0.1 M HEPES, PH 7.5, 0.5 MM ATP AND 0.3 MM MGCL2, REMARK 280 CRYOPROTECTED IN N-PARATONE OIL , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.45250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 PRO A 63 REMARK 465 GLY A 64 REMARK 465 HIS A 65 REMARK 465 GLY A 273 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 THR B 4 REMARK 465 GLY B 64 REMARK 465 HIS B 65 REMARK 465 SER B 66 REMARK 465 SER B 179 REMARK 465 ASN B 180 REMARK 465 ILE B 181 REMARK 465 ALA B 182 REMARK 465 ASP B 183 REMARK 465 THR B 184 REMARK 465 ALA B 270 REMARK 465 ALA B 271 REMARK 465 ARG B 272 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 210 N CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 67 119.88 -160.39 REMARK 500 HIS A 121 15.85 59.64 REMARK 500 SER A 221 -126.81 52.45 REMARK 500 ASP B 50 125.42 -36.66 REMARK 500 SER B 221 -119.49 52.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 329 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP01693 RELATED DB: TARGETDB DBREF 3G1Z A 1 325 UNP Q9ZJ12 SYK3_SALTY 1 325 DBREF 3G1Z B 1 325 UNP Q9ZJ12 SYK3_SALTY 1 325 SEQADV 3G1Z GLY A 0 UNP Q9ZJ12 EXPRESSION TAG SEQADV 3G1Z GLY B 0 UNP Q9ZJ12 EXPRESSION TAG SEQRES 1 A 326 GLY MET SER GLU THR ALA THR TRP GLN PRO SER ALA SER SEQRES 2 A 326 ILE PRO ASN LEU LEU LYS ARG ALA ALA ILE MET ALA GLU SEQRES 3 A 326 ILE ARG ARG PHE PHE ALA ASP ARG GLY VAL LEU GLU VAL SEQRES 4 A 326 GLU THR PRO CYS MET SER GLN ALA THR VAL THR ASP ILE SEQRES 5 A 326 HIS LEU PHE PRO PHE GLU THR ARG PHE VAL GLY PRO GLY SEQRES 6 A 326 HIS SER GLN GLY ILE ASN LEU TYR LEU MET THR SER PRO SEQRES 7 A 326 GLU TYR HIS MET LYS ARG LEU LEU ALA ALA GLY CYS GLY SEQRES 8 A 326 PRO VAL PHE GLN LEU CYS ARG SER PHE ARG ASN GLU GLU SEQRES 9 A 326 MET GLY ARG HIS HIS ASN PRO GLU PHE THR MET LEU GLU SEQRES 10 A 326 TRP TYR ARG PRO HIS TYR ASP MET TYR ARG LEU MET ASN SEQRES 11 A 326 GLU VAL ASP ASP LEU LEU GLN GLN VAL LEU ASP CYS GLN SEQRES 12 A 326 PRO ALA GLU SER LEU SER TYR GLN GLN ALA PHE GLN ARG SEQRES 13 A 326 HIS LEU GLU ILE ASP PRO LEU SER ALA ASP LYS THR GLN SEQRES 14 A 326 LEU ARG GLU ALA ALA ALA LYS LEU ASP LEU SER ASN ILE SEQRES 15 A 326 ALA ASP THR GLU GLU ASP ARG ASP THR LEU LEU GLN LEU SEQRES 16 A 326 LEU PHE THR MET GLY VAL GLU PRO HIS ILE GLY LYS GLU SEQRES 17 A 326 LYS PRO THR PHE ILE TYR HIS PHE PRO ALA SER GLN ALA SEQRES 18 A 326 SER LEU ALA GLN ILE SER THR GLU ASP HIS ARG VAL ALA SEQRES 19 A 326 GLU ARG PHE GLU VAL TYR TYR LYS GLY ILE GLU LEU ALA SEQRES 20 A 326 ASN GLY PHE HIS GLU LEU THR ASP ALA ARG GLU GLN GLN SEQRES 21 A 326 GLN ARG PHE GLU GLN ASP ASN ARG LYS ARG ALA ALA ARG SEQRES 22 A 326 GLY LEU PRO GLN GLN PRO ILE ASP GLN ASN LEU LEU ASP SEQRES 23 A 326 ALA LEU ALA ALA GLY LEU PRO ASP CYS SER GLY VAL ALA SEQRES 24 A 326 LEU GLY VAL ASP ARG LEU VAL MET LEU ALA LEU GLY ALA SEQRES 25 A 326 GLU SER LEU ALA ASP VAL ILE ALA PHE THR VAL ASP ARG SEQRES 26 A 326 ALA SEQRES 1 B 326 GLY MET SER GLU THR ALA THR TRP GLN PRO SER ALA SER SEQRES 2 B 326 ILE PRO ASN LEU LEU LYS ARG ALA ALA ILE MET ALA GLU SEQRES 3 B 326 ILE ARG ARG PHE PHE ALA ASP ARG GLY VAL LEU GLU VAL SEQRES 4 B 326 GLU THR PRO CYS MET SER GLN ALA THR VAL THR ASP ILE SEQRES 5 B 326 HIS LEU PHE PRO PHE GLU THR ARG PHE VAL GLY PRO GLY SEQRES 6 B 326 HIS SER GLN GLY ILE ASN LEU TYR LEU MET THR SER PRO SEQRES 7 B 326 GLU TYR HIS MET LYS ARG LEU LEU ALA ALA GLY CYS GLY SEQRES 8 B 326 PRO VAL PHE GLN LEU CYS ARG SER PHE ARG ASN GLU GLU SEQRES 9 B 326 MET GLY ARG HIS HIS ASN PRO GLU PHE THR MET LEU GLU SEQRES 10 B 326 TRP TYR ARG PRO HIS TYR ASP MET TYR ARG LEU MET ASN SEQRES 11 B 326 GLU VAL ASP ASP LEU LEU GLN GLN VAL LEU ASP CYS GLN SEQRES 12 B 326 PRO ALA GLU SER LEU SER TYR GLN GLN ALA PHE GLN ARG SEQRES 13 B 326 HIS LEU GLU ILE ASP PRO LEU SER ALA ASP LYS THR GLN SEQRES 14 B 326 LEU ARG GLU ALA ALA ALA LYS LEU ASP LEU SER ASN ILE SEQRES 15 B 326 ALA ASP THR GLU GLU ASP ARG ASP THR LEU LEU GLN LEU SEQRES 16 B 326 LEU PHE THR MET GLY VAL GLU PRO HIS ILE GLY LYS GLU SEQRES 17 B 326 LYS PRO THR PHE ILE TYR HIS PHE PRO ALA SER GLN ALA SEQRES 18 B 326 SER LEU ALA GLN ILE SER THR GLU ASP HIS ARG VAL ALA SEQRES 19 B 326 GLU ARG PHE GLU VAL TYR TYR LYS GLY ILE GLU LEU ALA SEQRES 20 B 326 ASN GLY PHE HIS GLU LEU THR ASP ALA ARG GLU GLN GLN SEQRES 21 B 326 GLN ARG PHE GLU GLN ASP ASN ARG LYS ARG ALA ALA ARG SEQRES 22 B 326 GLY LEU PRO GLN GLN PRO ILE ASP GLN ASN LEU LEU ASP SEQRES 23 B 326 ALA LEU ALA ALA GLY LEU PRO ASP CYS SER GLY VAL ALA SEQRES 24 B 326 LEU GLY VAL ASP ARG LEU VAL MET LEU ALA LEU GLY ALA SEQRES 25 B 326 GLU SER LEU ALA ASP VAL ILE ALA PHE THR VAL ASP ARG SEQRES 26 B 326 ALA HET AMP A 401 23 HET PO4 A 326 5 HET PO4 A 327 5 HET PO4 A 328 5 HET AMP B 401 23 HET PO4 B 326 5 HET PO4 B 327 5 HET PO4 B 328 5 HET CL B 329 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 PO4 6(O4 P 3-) FORMUL 11 CL CL 1- FORMUL 12 HOH *645(H2 O) HELIX 1 1 SER A 12 ARG A 33 1 22 HELIX 2 2 PRO A 77 GLY A 88 1 12 HELIX 3 3 ASP A 123 ASP A 140 1 18 HELIX 4 4 TYR A 149 GLU A 158 1 10 HELIX 5 5 ASP A 165 LEU A 176 1 12 HELIX 6 6 LEU A 178 GLU A 185 1 8 HELIX 7 7 ASP A 187 VAL A 200 1 14 HELIX 8 8 GLU A 201 ILE A 204 5 4 HELIX 9 9 PRO A 216 ALA A 220 5 5 HELIX 10 10 ASP A 254 ARG A 272 1 19 HELIX 11 11 ASP A 280 GLY A 290 1 11 HELIX 12 12 VAL A 301 GLY A 310 1 10 HELIX 13 13 SER A 313 VAL A 317 5 5 HELIX 14 14 SER B 12 ARG B 33 1 22 HELIX 15 15 PRO B 77 ALA B 87 1 11 HELIX 16 16 ASP B 123 ASP B 140 1 18 HELIX 17 17 TYR B 149 GLU B 158 1 10 HELIX 18 18 ASP B 165 LEU B 176 1 12 HELIX 19 19 ASP B 187 VAL B 200 1 14 HELIX 20 20 GLU B 201 ILE B 204 5 4 HELIX 21 21 PRO B 216 ALA B 220 5 5 HELIX 22 22 ASP B 254 ARG B 269 1 16 HELIX 23 23 ASP B 280 GLY B 290 1 11 HELIX 24 24 VAL B 301 GLY B 310 1 10 HELIX 25 25 SER B 313 VAL B 317 5 5 SHEET 1 A 8 LEU A 36 GLU A 37 0 SHEET 2 A 8 VAL A 92 PHE A 99 1 O PHE A 93 N LEU A 36 SHEET 3 A 8 GLU A 111 PRO A 120 -1 O PHE A 112 N SER A 98 SHEET 4 A 8 CYS A 294 GLY A 300 -1 O LEU A 299 N LEU A 115 SHEET 5 A 8 ILE A 243 HIS A 250 -1 N LEU A 245 O GLY A 300 SHEET 6 A 8 ARG A 235 TYR A 240 -1 N VAL A 238 O LEU A 245 SHEET 7 A 8 THR A 210 TYR A 213 -1 N THR A 210 O TYR A 239 SHEET 8 A 8 GLU A 145 SER A 148 1 N GLU A 145 O PHE A 211 SHEET 1 B 3 MET A 43 SER A 44 0 SHEET 2 B 3 ILE A 69 LEU A 73 -1 O TYR A 72 N SER A 44 SHEET 3 B 3 GLU A 57 PHE A 60 -1 N THR A 58 O LEU A 71 SHEET 1 C 8 LEU B 36 GLU B 37 0 SHEET 2 C 8 VAL B 92 PHE B 99 1 O PHE B 93 N LEU B 36 SHEET 3 C 8 GLU B 111 PRO B 120 -1 O PHE B 112 N SER B 98 SHEET 4 C 8 CYS B 294 GLY B 300 -1 O SER B 295 N ARG B 119 SHEET 5 C 8 ILE B 243 HIS B 250 -1 N ASN B 247 O ALA B 298 SHEET 6 C 8 ARG B 235 TYR B 240 -1 N PHE B 236 O GLY B 248 SHEET 7 C 8 THR B 210 TYR B 213 -1 N ILE B 212 O GLU B 237 SHEET 8 C 8 GLU B 145 SER B 148 1 N GLU B 145 O PHE B 211 SHEET 1 D 3 MET B 43 SER B 44 0 SHEET 2 D 3 ILE B 69 LEU B 73 -1 O TYR B 72 N SER B 44 SHEET 3 D 3 GLU B 57 PHE B 60 -1 N THR B 58 O LEU B 71 SITE 1 AC1 19 ARG A 100 GLU A 102 HIS A 107 HIS A 108 SITE 2 AC1 19 ASN A 109 PHE A 112 MET A 114 GLU A 244 SITE 3 AC1 19 LEU A 245 ALA A 246 ASN A 247 ALA A 298 SITE 4 AC1 19 GLY A 300 ARG A 303 LEU A 314 PO4 A 328 SITE 5 AC1 19 HOH A 507 HOH A 558 HOH A 750 SITE 1 AC2 7 GLY A 105 ARG A 106 HIS A 107 HIS A 108 SITE 2 AC2 7 HOH A 441 HOH A 660 HOH A 682 SITE 1 AC3 8 TYR A 125 HIS A 214 SER A 226 GLU A 228 SITE 2 AC3 8 GLU A 234 HOH A 629 HOH A 696 HOH A 815 SITE 1 AC4 5 HIS A 108 GLU A 244 ARG A 303 AMP A 401 SITE 2 AC4 5 HOH A 841 SITE 1 AC5 18 ARG B 100 GLU B 102 HIS B 107 HIS B 108 SITE 2 AC5 18 ASN B 109 PHE B 112 MET B 114 GLU B 244 SITE 3 AC5 18 LEU B 245 ALA B 246 ASN B 247 GLY B 300 SITE 4 AC5 18 ARG B 303 LEU B 314 PO4 B 328 HOH B 475 SITE 5 AC5 18 HOH B 752 HOH B 754 SITE 1 AC6 4 GLY B 105 ARG B 106 HIS B 107 HIS B 108 SITE 1 AC7 7 TYR B 125 HIS B 214 SER B 226 GLU B 228 SITE 2 AC7 7 GLU B 234 HOH B 429 HOH B 620 SITE 1 AC8 5 HIS B 108 GLU B 244 ARG B 303 AMP B 401 SITE 2 AC8 5 HOH B 752 SITE 1 AC9 4 ARG B 33 HOH B 399 HOH B 627 HOH B 629 CRYST1 69.901 68.905 73.270 90.00 110.31 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014306 0.000000 0.005294 0.00000 SCALE2 0.000000 0.014513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014553 0.00000