HEADER TRANSFERASE 31-JAN-09 3G2O TITLE CRYSTAL STRUCTURE OF THE GLYCOPEPTIDE N-METHYLTRANSFERASE MTFA TITLE 2 COMPLEXED WITH (S)-ADENOSYL-L-METHIONINE (SAM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCZA361.24; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_TAXID: 31958; SOURCE 4 GENE: MTFA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SAM-DEPENDENT METHYLTRANSFERASE, GLYCOPEPTIDE ANTIBIOTICS KEYWDS 2 BIOSYNTHESIS, STRUCTURAL GENOMICS, MONTREAL-KINGSTON BACTERIAL KEYWDS 3 STRUCTURAL GENOMICS INITIATIVE, BSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SHI,A.MATTE,M.CYGLER,MONTREAL-KINGSTON BACTERIAL STRUCTURAL AUTHOR 2 GENOMICS INITIATIVE (BSGI) REVDAT 4 06-SEP-23 3G2O 1 REMARK SEQADV REVDAT 3 01-NOV-17 3G2O 1 REMARK REVDAT 2 13-JUL-11 3G2O 1 VERSN REVDAT 1 05-MAY-09 3G2O 0 JRNL AUTH R.SHI,S.S.LAMB,B.ZAKERI,A.PROTEAU,Q.CUI,T.SULEA,A.MATTE, JRNL AUTH 2 G.D.WRIGHT,M.CYGLER JRNL TITL STRUCTURE AND FUNCTION OF THE GLYCOPEPTIDE JRNL TITL 2 N-METHYLTRANSFERASE MTFA, A TOOL FOR THE BIOSYNTHESIS OF JRNL TITL 3 MODIFIED GLYCOPEPTIDE ANTIBIOTICS. JRNL REF CHEM.BIOL. V. 16 401 2009 JRNL REFN ISSN 1074-5521 JRNL PMID 19389626 JRNL DOI 10.1016/J.CHEMBIOL.2009.02.007 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 35029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1783 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1586 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3603 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.31000 REMARK 3 B22 (A**2) : 1.99000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.49000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.758 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3727 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5048 ; 1.300 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 465 ; 6.160 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;37.437 ;22.485 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 604 ;15.500 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.041 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 580 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2811 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1477 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2427 ; 0.298 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 197 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.101 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2436 ; 0.889 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3764 ; 1.424 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1450 ; 1.855 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1283 ; 3.026 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 175 REMARK 3 RESIDUE RANGE : A 235 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): 22.5837 6.8115 34.9730 REMARK 3 T TENSOR REMARK 3 T11: -0.0901 T22: -0.0090 REMARK 3 T33: -0.0146 T12: -0.0062 REMARK 3 T13: -0.0063 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.9145 L22: 2.1939 REMARK 3 L33: 1.1674 L12: -0.0716 REMARK 3 L13: 1.0295 L23: -0.8112 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: 0.0517 S13: 0.1531 REMARK 3 S21: 0.0225 S22: -0.1328 S23: -0.3085 REMARK 3 S31: -0.0039 S32: 0.1182 S33: 0.1172 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 32 REMARK 3 RESIDUE RANGE : B 206 B 234 REMARK 3 RESIDUE RANGE : A 176 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3199 16.2526 17.4586 REMARK 3 T TENSOR REMARK 3 T11: -0.0061 T22: 0.1218 REMARK 3 T33: 0.2544 T12: 0.1459 REMARK 3 T13: -0.0327 T23: 0.1190 REMARK 3 L TENSOR REMARK 3 L11: 6.3920 L22: 1.7076 REMARK 3 L33: 2.0782 L12: 2.4518 REMARK 3 L13: -1.4621 L23: -0.2542 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: 0.4811 S13: 1.4994 REMARK 3 S21: 0.0073 S22: 0.0257 S23: 0.5854 REMARK 3 S31: -0.3730 S32: -0.5030 S33: -0.0951 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 36 REMARK 3 RESIDUE RANGE : A 206 A 234 REMARK 3 RESIDUE RANGE : B 176 B 205 REMARK 3 ORIGIN FOR THE GROUP (A): 22.7344 -5.5173 9.4351 REMARK 3 T TENSOR REMARK 3 T11: 0.0005 T22: 0.2287 REMARK 3 T33: -0.0945 T12: 0.2134 REMARK 3 T13: 0.0451 T23: 0.1159 REMARK 3 L TENSOR REMARK 3 L11: 0.4422 L22: 2.2635 REMARK 3 L33: 4.2418 L12: -0.8976 REMARK 3 L13: -0.2266 L23: 0.9367 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.0544 S13: 0.3381 REMARK 3 S21: 0.0198 S22: -0.0736 S23: -0.3193 REMARK 3 S31: 0.7024 S32: 0.8569 S33: 0.0513 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 47 B 175 REMARK 3 RESIDUE RANGE : B 235 B 273 REMARK 3 ORIGIN FOR THE GROUP (A): -13.4670 -7.6277 16.3131 REMARK 3 T TENSOR REMARK 3 T11: -0.0385 T22: 0.0275 REMARK 3 T33: -0.1016 T12: -0.0122 REMARK 3 T13: 0.0176 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 2.7910 L22: 0.2328 REMARK 3 L33: 1.3725 L12: 0.2789 REMARK 3 L13: -0.2254 L23: 0.0119 REMARK 3 S TENSOR REMARK 3 S11: -0.0439 S12: 0.1159 S13: -0.2604 REMARK 3 S21: -0.0355 S22: 0.0241 S23: -0.0710 REMARK 3 S31: 0.1565 S32: -0.1171 S33: 0.0198 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3G2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35055 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.0080 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.27600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3G2M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 18% PEG-MONOMETHYL REMARK 280 ETHER 5K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.45850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.16750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.45850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.16750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 ALA A 37 REMARK 465 ASP A 38 REMARK 465 THR A 39 REMARK 465 TYR A 40 REMARK 465 ARG A 41 REMARK 465 ASP A 42 REMARK 465 LEU A 43 REMARK 465 ILE A 44 REMARK 465 GLN A 45 REMARK 465 ASP A 46 REMARK 465 ALA A 47 REMARK 465 GLY A 61 REMARK 465 PRO A 62 REMARK 465 GLU A 187 REMARK 465 LEU A 188 REMARK 465 PRO A 189 REMARK 465 GLY A 190 REMARK 465 ARG A 191 REMARK 465 SER A 192 REMARK 465 GLY A 193 REMARK 465 ARG A 194 REMARK 465 ARG A 195 REMARK 465 TYR A 196 REMARK 465 ALA A 275 REMARK 465 THR A 276 REMARK 465 ALA A 277 REMARK 465 ASP A 278 REMARK 465 ALA A 279 REMARK 465 ARG A 280 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 GLN B 4 REMARK 465 LEU B 5 REMARK 465 GLU B 6 REMARK 465 ARG B 7 REMARK 465 GLY B 8 REMARK 465 ASP B 16 REMARK 465 VAL B 17 REMARK 465 LEU B 18 REMARK 465 LEU B 19 REMARK 465 ALA B 20 REMARK 465 SER B 21 REMARK 465 VAL B 22 REMARK 465 GLY B 23 REMARK 465 GLU B 24 REMARK 465 ARG B 25 REMARK 465 GLY B 26 REMARK 465 VAL B 27 REMARK 465 LEU B 28 REMARK 465 ASP B 33 REMARK 465 GLU B 34 REMARK 465 GLY B 35 REMARK 465 ALA B 36 REMARK 465 ALA B 37 REMARK 465 ASP B 38 REMARK 465 THR B 39 REMARK 465 TYR B 40 REMARK 465 ARG B 41 REMARK 465 ASP B 42 REMARK 465 LEU B 43 REMARK 465 ILE B 44 REMARK 465 GLN B 45 REMARK 465 ASP B 46 REMARK 465 GLY B 190 REMARK 465 ARG B 191 REMARK 465 SER B 192 REMARK 465 GLU B 218 REMARK 465 THR B 219 REMARK 465 THR B 220 REMARK 465 ASP B 221 REMARK 465 PRO B 222 REMARK 465 PHE B 223 REMARK 465 VAL B 224 REMARK 465 GLY B 274 REMARK 465 ALA B 275 REMARK 465 THR B 276 REMARK 465 ALA B 277 REMARK 465 ASP B 278 REMARK 465 ALA B 279 REMARK 465 ARG B 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 11 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 213 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 57.41 -99.44 REMARK 500 ASP A 33 -106.81 -148.31 REMARK 500 ALA A 125 74.63 -165.62 REMARK 500 ASP A 129 48.79 -91.25 REMARK 500 ALA A 205 -51.63 -123.82 REMARK 500 ASP A 217 -155.84 -81.54 REMARK 500 GLU A 218 -31.28 -133.82 REMARK 500 THR A 219 -94.59 -75.41 REMARK 500 THR A 220 -35.17 78.92 REMARK 500 ASP A 221 -70.41 111.65 REMARK 500 HIS B 14 50.82 -99.03 REMARK 500 VAL B 63 90.22 35.63 REMARK 500 ALA B 125 94.89 -167.77 REMARK 500 ASP B 129 76.70 41.59 REMARK 500 LYS B 130 139.41 166.99 REMARK 500 ALA B 205 -53.58 -132.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 221 PRO A 222 146.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G2M RELATED DB: PDB REMARK 900 MTFA APO STRUCTURE REMARK 900 RELATED ID: 3G2P RELATED DB: PDB REMARK 900 MTFA-SAH COMPLEX STRUCTURE REMARK 900 RELATED ID: 3G2Q RELATED DB: PDB REMARK 900 MTFA-SFG COMPLEX STRUCTURE REMARK 900 RELATED ID: MTFA_AMYOR RELATED DB: TARGETDB DBREF 3G2O A 1 280 UNP O52805 O52805_AMYOR 1 280 DBREF 3G2O B 1 280 UNP O52805 O52805_AMYOR 1 280 SEQADV 3G2O MET A -18 UNP O52805 EXPRESSION TAG SEQADV 3G2O GLY A -17 UNP O52805 EXPRESSION TAG SEQADV 3G2O SER A -16 UNP O52805 EXPRESSION TAG SEQADV 3G2O SER A -15 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS A -14 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS A -13 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS A -12 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS A -11 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS A -10 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS A -9 UNP O52805 EXPRESSION TAG SEQADV 3G2O SER A -8 UNP O52805 EXPRESSION TAG SEQADV 3G2O GLY A -7 UNP O52805 EXPRESSION TAG SEQADV 3G2O GLY A -6 UNP O52805 EXPRESSION TAG SEQADV 3G2O LEU A -5 UNP O52805 EXPRESSION TAG SEQADV 3G2O VAL A -4 UNP O52805 EXPRESSION TAG SEQADV 3G2O PRO A -3 UNP O52805 EXPRESSION TAG SEQADV 3G2O ARG A -2 UNP O52805 EXPRESSION TAG SEQADV 3G2O GLY A -1 UNP O52805 EXPRESSION TAG SEQADV 3G2O SER A 0 UNP O52805 EXPRESSION TAG SEQADV 3G2O MET B -18 UNP O52805 EXPRESSION TAG SEQADV 3G2O GLY B -17 UNP O52805 EXPRESSION TAG SEQADV 3G2O SER B -16 UNP O52805 EXPRESSION TAG SEQADV 3G2O SER B -15 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS B -14 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS B -13 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS B -12 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS B -11 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS B -10 UNP O52805 EXPRESSION TAG SEQADV 3G2O HIS B -9 UNP O52805 EXPRESSION TAG SEQADV 3G2O SER B -8 UNP O52805 EXPRESSION TAG SEQADV 3G2O GLY B -7 UNP O52805 EXPRESSION TAG SEQADV 3G2O GLY B -6 UNP O52805 EXPRESSION TAG SEQADV 3G2O LEU B -5 UNP O52805 EXPRESSION TAG SEQADV 3G2O VAL B -4 UNP O52805 EXPRESSION TAG SEQADV 3G2O PRO B -3 UNP O52805 EXPRESSION TAG SEQADV 3G2O ARG B -2 UNP O52805 EXPRESSION TAG SEQADV 3G2O GLY B -1 UNP O52805 EXPRESSION TAG SEQADV 3G2O SER B 0 UNP O52805 EXPRESSION TAG SEQRES 1 A 299 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLY GLY SEQRES 2 A 299 LEU VAL PRO ARG GLY SER MET SER ASN GLN LEU GLU ARG SEQRES 3 A 299 GLY PRO VAL ARG THR PRO HIS ALA ASP VAL LEU LEU ALA SEQRES 4 A 299 SER VAL GLY GLU ARG GLY VAL LEU CYS ASP PHE TYR ASP SEQRES 5 A 299 GLU GLY ALA ALA ASP THR TYR ARG ASP LEU ILE GLN ASP SEQRES 6 A 299 ALA ASP GLY THR SER GLU ALA ARG GLU PHE ALA THR ARG SEQRES 7 A 299 THR GLY PRO VAL SER GLY PRO VAL LEU GLU LEU ALA ALA SEQRES 8 A 299 GLY MET GLY ARG LEU THR PHE PRO PHE LEU ASP LEU GLY SEQRES 9 A 299 TRP GLU VAL THR ALA LEU GLU LEU SER THR SER VAL LEU SEQRES 10 A 299 ALA ALA PHE ARG LYS ARG LEU ALA GLU ALA PRO ALA ASP SEQRES 11 A 299 VAL ARG ASP ARG CYS THR LEU VAL GLN GLY ASP MET SER SEQRES 12 A 299 ALA PHE ALA LEU ASP LYS ARG PHE GLY THR VAL VAL ILE SEQRES 13 A 299 SER SER GLY SER ILE ASN GLU LEU ASP GLU ALA ASP ARG SEQRES 14 A 299 ARG GLY LEU TYR ALA SER VAL ARG GLU HIS LEU GLU PRO SEQRES 15 A 299 GLY GLY LYS PHE LEU LEU SER LEU ALA MET SER GLU ALA SEQRES 16 A 299 ALA GLU SER GLU PRO LEU GLU ARG LYS GLN GLU LEU PRO SEQRES 17 A 299 GLY ARG SER GLY ARG ARG TYR VAL LEU HIS VAL ARG HIS SEQRES 18 A 299 LEU PRO ALA GLU GLU ILE GLN GLU ILE THR ILE HIS PRO SEQRES 19 A 299 ALA ASP GLU THR THR ASP PRO PHE VAL VAL CYS THR HIS SEQRES 20 A 299 ARG ARG ARG LEU LEU ALA PRO ASP GLN VAL VAL ARG GLU SEQRES 21 A 299 LEU VAL ARG SER GLY PHE ASP VAL ILE ALA GLN THR PRO SEQRES 22 A 299 PHE ALA SER GLY GLY ALA GLY ARG LYS ASP MET VAL LEU SEQRES 23 A 299 VAL GLU ALA VAL MET PRO GLY ALA THR ALA ASP ALA ARG SEQRES 1 B 299 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLY GLY SEQRES 2 B 299 LEU VAL PRO ARG GLY SER MET SER ASN GLN LEU GLU ARG SEQRES 3 B 299 GLY PRO VAL ARG THR PRO HIS ALA ASP VAL LEU LEU ALA SEQRES 4 B 299 SER VAL GLY GLU ARG GLY VAL LEU CYS ASP PHE TYR ASP SEQRES 5 B 299 GLU GLY ALA ALA ASP THR TYR ARG ASP LEU ILE GLN ASP SEQRES 6 B 299 ALA ASP GLY THR SER GLU ALA ARG GLU PHE ALA THR ARG SEQRES 7 B 299 THR GLY PRO VAL SER GLY PRO VAL LEU GLU LEU ALA ALA SEQRES 8 B 299 GLY MET GLY ARG LEU THR PHE PRO PHE LEU ASP LEU GLY SEQRES 9 B 299 TRP GLU VAL THR ALA LEU GLU LEU SER THR SER VAL LEU SEQRES 10 B 299 ALA ALA PHE ARG LYS ARG LEU ALA GLU ALA PRO ALA ASP SEQRES 11 B 299 VAL ARG ASP ARG CYS THR LEU VAL GLN GLY ASP MET SER SEQRES 12 B 299 ALA PHE ALA LEU ASP LYS ARG PHE GLY THR VAL VAL ILE SEQRES 13 B 299 SER SER GLY SER ILE ASN GLU LEU ASP GLU ALA ASP ARG SEQRES 14 B 299 ARG GLY LEU TYR ALA SER VAL ARG GLU HIS LEU GLU PRO SEQRES 15 B 299 GLY GLY LYS PHE LEU LEU SER LEU ALA MET SER GLU ALA SEQRES 16 B 299 ALA GLU SER GLU PRO LEU GLU ARG LYS GLN GLU LEU PRO SEQRES 17 B 299 GLY ARG SER GLY ARG ARG TYR VAL LEU HIS VAL ARG HIS SEQRES 18 B 299 LEU PRO ALA GLU GLU ILE GLN GLU ILE THR ILE HIS PRO SEQRES 19 B 299 ALA ASP GLU THR THR ASP PRO PHE VAL VAL CYS THR HIS SEQRES 20 B 299 ARG ARG ARG LEU LEU ALA PRO ASP GLN VAL VAL ARG GLU SEQRES 21 B 299 LEU VAL ARG SER GLY PHE ASP VAL ILE ALA GLN THR PRO SEQRES 22 B 299 PHE ALA SER GLY GLY ALA GLY ARG LYS ASP MET VAL LEU SEQRES 23 B 299 VAL GLU ALA VAL MET PRO GLY ALA THR ALA ASP ALA ARG HET SAM A 500 27 HET SAM B 600 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *144(H2 O) HELIX 1 1 THR A 12 SER A 21 1 10 HELIX 2 2 GLY A 49 THR A 60 1 12 HELIX 3 3 LEU A 77 ASP A 83 1 7 HELIX 4 4 SER A 94 GLU A 107 1 14 HELIX 5 5 PRO A 109 ARG A 115 1 7 HELIX 6 6 SER A 138 ASN A 143 1 6 HELIX 7 7 ASP A 146 HIS A 160 1 15 HELIX 8 8 SER A 174 SER A 179 1 6 HELIX 9 9 ALA A 234 SER A 245 1 12 HELIX 10 10 GLY B 49 ARG B 59 1 11 HELIX 11 11 LEU B 77 ASP B 83 1 7 HELIX 12 12 SER B 94 ALA B 108 1 15 HELIX 13 13 PRO B 109 ARG B 115 1 7 HELIX 14 14 SER B 138 ASN B 143 1 6 HELIX 15 15 ASP B 146 GLU B 159 1 14 HELIX 16 16 SER B 174 SER B 179 1 6 HELIX 17 17 ALA B 234 SER B 245 1 12 SHEET 1 A 5 GLY A 26 ASP A 30 0 SHEET 2 A 5 PHE A 223 LEU A 233 1 O VAL A 225 N VAL A 27 SHEET 3 A 5 LEU A 198 PRO A 215 -1 N ILE A 213 O CYS A 226 SHEET 4 A 5 TYR B 196 ILE B 213 -1 O HIS B 199 N THR A 212 SHEET 5 A 5 ARG B 184 LEU B 188 -1 N LEU B 188 O TYR B 196 SHEET 1 B 4 GLU A 183 ARG A 184 0 SHEET 2 B 4 LEU A 198 PRO A 215 -1 O VAL A 200 N ARG A 184 SHEET 3 B 4 TYR B 196 ILE B 213 -1 O HIS B 199 N THR A 212 SHEET 4 B 4 CYS B 226 LEU B 233 -1 O HIS B 228 N ILE B 211 SHEET 1 C 7 CYS A 116 GLN A 120 0 SHEET 2 C 7 VAL A 88 GLU A 92 1 N ALA A 90 O THR A 117 SHEET 3 C 7 VAL A 67 LEU A 70 1 N GLU A 69 O THR A 89 SHEET 4 C 7 PHE A 132 ILE A 137 1 O VAL A 136 N LEU A 68 SHEET 5 C 7 LEU A 161 ALA A 172 1 O LEU A 168 N VAL A 135 SHEET 6 C 7 MET A 265 VAL A 271 -1 O ALA A 270 N PHE A 167 SHEET 7 C 7 ASP A 248 PHE A 255 -1 N ASP A 248 O VAL A 271 SHEET 1 D 7 CYS B 116 GLN B 120 0 SHEET 2 D 7 VAL B 88 GLU B 92 1 N VAL B 88 O THR B 117 SHEET 3 D 7 VAL B 67 LEU B 70 1 N GLU B 69 O LEU B 91 SHEET 4 D 7 PHE B 132 ILE B 137 1 O VAL B 136 N LEU B 68 SHEET 5 D 7 LEU B 161 ALA B 172 1 O LEU B 168 N VAL B 135 SHEET 6 D 7 MET B 265 VAL B 271 -1 O ALA B 270 N PHE B 167 SHEET 7 D 7 ASP B 248 PHE B 255 -1 N ASP B 248 O VAL B 271 SITE 1 AC1 17 ALA A 71 ALA A 72 GLY A 73 ARG A 76 SITE 2 AC1 17 GLU A 92 LEU A 93 GLY A 121 ASP A 122 SITE 3 AC1 17 MET A 123 SER A 138 GLY A 140 SER A 141 SITE 4 AC1 17 GLU A 144 HOH A 290 HOH B 344 HOH B 358 SITE 5 AC1 17 HOH B 392 SITE 1 AC2 14 ALA B 71 GLY B 73 ARG B 76 GLU B 92 SITE 2 AC2 14 LEU B 93 GLY B 121 ASP B 122 MET B 123 SITE 3 AC2 14 SER B 138 GLY B 140 SER B 141 HOH B 304 SITE 4 AC2 14 HOH B 328 HOH B 411 CRYST1 126.917 72.335 75.306 90.00 103.89 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007879 0.000000 0.001949 0.00000 SCALE2 0.000000 0.013825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013679 0.00000