HEADER TRANSFERASE 31-JAN-09 3G2Q TITLE CRYSTAL STRUCTURE OF THE GLYCOPEPTIDE N-METHYLTRANSFERASE MTFA TITLE 2 COMPLEXED WITH SINEFUNGIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCZA361.24; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_TAXID: 31958; SOURCE 4 GENE: MTFA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SAM-DEPENDENT METHYLTRANSFERASE, GLYCOPEPTIDE ANTIBIOTICS KEYWDS 2 BIOSYNTHESIS, STRUCTURAL GENOMICS, MONTREAL-KINGSTON BACTERIAL KEYWDS 3 STRUCTURAL GENOMICS INITIATIVE, BSGI, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SHI,A.MATTE,M.CYGLER,MONTREAL-KINGSTON BACTERIAL STRUCTURAL AUTHOR 2 GENOMICS INITIATIVE (BSGI) REVDAT 4 06-SEP-23 3G2Q 1 REMARK SEQADV REVDAT 3 01-NOV-17 3G2Q 1 REMARK REVDAT 2 13-JUL-11 3G2Q 1 VERSN REVDAT 1 05-MAY-09 3G2Q 0 JRNL AUTH R.SHI,S.S.LAMB,B.ZAKERI,A.PROTEAU,Q.CUI,T.SULEA,A.MATTE, JRNL AUTH 2 G.D.WRIGHT,M.CYGLER JRNL TITL STRUCTURE AND FUNCTION OF THE GLYCOPEPTIDE JRNL TITL 2 N-METHYLTRANSFERASE MTFA, A TOOL FOR THE BIOSYNTHESIS OF JRNL TITL 3 MODIFIED GLYCOPEPTIDE ANTIBIOTICS. JRNL REF CHEM.BIOL. V. 16 401 2009 JRNL REFN ISSN 1074-5521 JRNL PMID 19389626 JRNL DOI 10.1016/J.CHEMBIOL.2009.02.007 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 31620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1589 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1463 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3621 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 41.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.26000 REMARK 3 B22 (A**2) : 1.74000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.205 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.649 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3754 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5086 ; 1.437 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 6.317 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;36.603 ;22.364 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 605 ;16.403 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;16.368 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2840 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1528 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2445 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 204 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.072 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2457 ; 0.923 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3799 ; 1.427 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1451 ; 1.892 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1285 ; 3.017 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 175 REMARK 3 RESIDUE RANGE : A 235 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6611 6.6505 -34.8336 REMARK 3 T TENSOR REMARK 3 T11: -0.1428 T22: -0.0749 REMARK 3 T33: -0.0750 T12: 0.0045 REMARK 3 T13: -0.0049 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 3.1703 L22: 1.9875 REMARK 3 L33: 1.4973 L12: 0.2225 REMARK 3 L13: 0.6127 L23: 0.8337 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: 0.0560 S13: 0.2974 REMARK 3 S21: -0.0820 S22: -0.1133 S23: 0.2124 REMARK 3 S31: -0.0849 S32: -0.0767 S33: 0.0749 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 32 REMARK 3 RESIDUE RANGE : B 206 B 234 REMARK 3 RESIDUE RANGE : A 176 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2133 16.0005 -17.8372 REMARK 3 T TENSOR REMARK 3 T11: 0.0138 T22: 0.0725 REMARK 3 T33: 0.2511 T12: -0.1097 REMARK 3 T13: -0.0226 T23: -0.0596 REMARK 3 L TENSOR REMARK 3 L11: 7.8293 L22: 4.6747 REMARK 3 L33: 3.1260 L12: -3.8139 REMARK 3 L13: -3.2816 L23: -0.6220 REMARK 3 S TENSOR REMARK 3 S11: 0.3609 S12: -0.2726 S13: 1.8118 REMARK 3 S21: 0.3915 S22: -0.0605 S23: -1.0207 REMARK 3 S31: -0.6222 S32: 0.2912 S33: -0.3004 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 37 REMARK 3 RESIDUE RANGE : A 206 A 234 REMARK 3 RESIDUE RANGE : B 176 B 205 REMARK 3 ORIGIN FOR THE GROUP (A): -23.0589 -5.6282 -9.6417 REMARK 3 T TENSOR REMARK 3 T11: -0.0318 T22: 0.1711 REMARK 3 T33: -0.0907 T12: -0.2071 REMARK 3 T13: 0.0655 T23: -0.1018 REMARK 3 L TENSOR REMARK 3 L11: 1.7618 L22: 1.6527 REMARK 3 L33: 4.6883 L12: 0.4719 REMARK 3 L13: -0.6024 L23: -0.8174 REMARK 3 S TENSOR REMARK 3 S11: -0.1216 S12: -0.1266 S13: -0.0403 REMARK 3 S21: -0.0119 S22: -0.0384 S23: 0.2029 REMARK 3 S31: 0.7665 S32: -0.8887 S33: 0.1600 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 47 B 175 REMARK 3 RESIDUE RANGE : B 235 B 273 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2924 -7.9097 -16.3040 REMARK 3 T TENSOR REMARK 3 T11: -0.0780 T22: -0.0282 REMARK 3 T33: -0.1470 T12: 0.0044 REMARK 3 T13: 0.0263 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 2.4650 L22: 0.1668 REMARK 3 L33: 1.3642 L12: -0.3471 REMARK 3 L13: 0.0939 L23: 0.0923 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: -0.1067 S13: -0.2281 REMARK 3 S21: 0.0235 S22: -0.0014 S23: 0.0778 REMARK 3 S31: 0.1499 S32: 0.1179 S33: 0.0237 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3G2Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051348. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31659 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8960 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3G2M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.5, 18% PEG-MONOMETHYL REMARK 280 ETHER 5K, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.30550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.95900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.30550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.95900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 ASP A 38 REMARK 465 THR A 39 REMARK 465 TYR A 40 REMARK 465 ARG A 41 REMARK 465 ASP A 42 REMARK 465 LEU A 43 REMARK 465 ILE A 44 REMARK 465 GLN A 45 REMARK 465 ASP A 46 REMARK 465 PRO A 62 REMARK 465 GLU A 187 REMARK 465 LEU A 188 REMARK 465 PRO A 189 REMARK 465 GLY A 190 REMARK 465 ARG A 191 REMARK 465 SER A 192 REMARK 465 GLY A 193 REMARK 465 ARG A 194 REMARK 465 ARG A 195 REMARK 465 TYR A 196 REMARK 465 ALA A 275 REMARK 465 THR A 276 REMARK 465 ALA A 277 REMARK 465 ASP A 278 REMARK 465 ALA A 279 REMARK 465 ARG A 280 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 GLY B -6 REMARK 465 LEU B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ARG B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 GLN B 4 REMARK 465 LEU B 5 REMARK 465 GLU B 6 REMARK 465 ARG B 7 REMARK 465 ASP B 16 REMARK 465 VAL B 17 REMARK 465 LEU B 18 REMARK 465 LEU B 19 REMARK 465 ALA B 20 REMARK 465 SER B 21 REMARK 465 VAL B 22 REMARK 465 GLY B 23 REMARK 465 GLU B 24 REMARK 465 ARG B 25 REMARK 465 GLY B 26 REMARK 465 VAL B 27 REMARK 465 LEU B 28 REMARK 465 ASP B 33 REMARK 465 GLU B 34 REMARK 465 GLY B 35 REMARK 465 ALA B 36 REMARK 465 ALA B 37 REMARK 465 ASP B 38 REMARK 465 THR B 39 REMARK 465 TYR B 40 REMARK 465 ARG B 41 REMARK 465 ASP B 42 REMARK 465 LEU B 43 REMARK 465 ILE B 44 REMARK 465 GLN B 45 REMARK 465 ASP B 46 REMARK 465 ARG B 191 REMARK 465 SER B 192 REMARK 465 GLU B 218 REMARK 465 THR B 219 REMARK 465 THR B 220 REMARK 465 ASP B 221 REMARK 465 PRO B 222 REMARK 465 PHE B 223 REMARK 465 VAL B 224 REMARK 465 GLY B 274 REMARK 465 ALA B 275 REMARK 465 THR B 276 REMARK 465 ALA B 277 REMARK 465 ASP B 278 REMARK 465 ALA B 279 REMARK 465 ARG B 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 ARG B 11 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 213 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 32 43.31 -95.92 REMARK 500 ASP A 33 -127.08 -138.42 REMARK 500 GLU A 34 95.23 -49.07 REMARK 500 ALA A 36 -9.36 -59.48 REMARK 500 THR A 60 -71.12 -105.07 REMARK 500 ALA A 125 75.97 -157.69 REMARK 500 ASP A 146 -176.76 -69.87 REMARK 500 ASP A 217 -156.18 -73.60 REMARK 500 GLU A 218 -26.27 -145.38 REMARK 500 THR A 219 -87.57 -71.15 REMARK 500 THR A 220 -70.67 57.96 REMARK 500 ASP A 221 108.58 53.39 REMARK 500 ALA A 260 149.74 -179.78 REMARK 500 SER B 64 110.16 -0.69 REMARK 500 ALA B 125 87.47 -169.20 REMARK 500 ASP B 129 -25.41 67.87 REMARK 500 PRO B 189 -129.78 -96.20 REMARK 500 ALA B 205 -52.59 -132.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SFG A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SFG B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G2M RELATED DB: PDB REMARK 900 MTFA APO STRUCTURE REMARK 900 RELATED ID: 3G2O RELATED DB: PDB REMARK 900 MTFA-SAM COMPLEX STRUCTURE REMARK 900 RELATED ID: 3G2P RELATED DB: PDB REMARK 900 MTFA-SAH COMPLEX STRUCTURE REMARK 900 RELATED ID: MTFA_AMYOR RELATED DB: TARGETDB DBREF 3G2Q A 1 280 UNP O52805 O52805_AMYOR 1 280 DBREF 3G2Q B 1 280 UNP O52805 O52805_AMYOR 1 280 SEQADV 3G2Q MET A -18 UNP O52805 EXPRESSION TAG SEQADV 3G2Q GLY A -17 UNP O52805 EXPRESSION TAG SEQADV 3G2Q SER A -16 UNP O52805 EXPRESSION TAG SEQADV 3G2Q SER A -15 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS A -14 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS A -13 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS A -12 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS A -11 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS A -10 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS A -9 UNP O52805 EXPRESSION TAG SEQADV 3G2Q SER A -8 UNP O52805 EXPRESSION TAG SEQADV 3G2Q GLY A -7 UNP O52805 EXPRESSION TAG SEQADV 3G2Q GLY A -6 UNP O52805 EXPRESSION TAG SEQADV 3G2Q LEU A -5 UNP O52805 EXPRESSION TAG SEQADV 3G2Q VAL A -4 UNP O52805 EXPRESSION TAG SEQADV 3G2Q PRO A -3 UNP O52805 EXPRESSION TAG SEQADV 3G2Q ARG A -2 UNP O52805 EXPRESSION TAG SEQADV 3G2Q GLY A -1 UNP O52805 EXPRESSION TAG SEQADV 3G2Q SER A 0 UNP O52805 EXPRESSION TAG SEQADV 3G2Q MET B -18 UNP O52805 EXPRESSION TAG SEQADV 3G2Q GLY B -17 UNP O52805 EXPRESSION TAG SEQADV 3G2Q SER B -16 UNP O52805 EXPRESSION TAG SEQADV 3G2Q SER B -15 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS B -14 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS B -13 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS B -12 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS B -11 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS B -10 UNP O52805 EXPRESSION TAG SEQADV 3G2Q HIS B -9 UNP O52805 EXPRESSION TAG SEQADV 3G2Q SER B -8 UNP O52805 EXPRESSION TAG SEQADV 3G2Q GLY B -7 UNP O52805 EXPRESSION TAG SEQADV 3G2Q GLY B -6 UNP O52805 EXPRESSION TAG SEQADV 3G2Q LEU B -5 UNP O52805 EXPRESSION TAG SEQADV 3G2Q VAL B -4 UNP O52805 EXPRESSION TAG SEQADV 3G2Q PRO B -3 UNP O52805 EXPRESSION TAG SEQADV 3G2Q ARG B -2 UNP O52805 EXPRESSION TAG SEQADV 3G2Q GLY B -1 UNP O52805 EXPRESSION TAG SEQADV 3G2Q SER B 0 UNP O52805 EXPRESSION TAG SEQRES 1 A 299 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLY GLY SEQRES 2 A 299 LEU VAL PRO ARG GLY SER MET SER ASN GLN LEU GLU ARG SEQRES 3 A 299 GLY PRO VAL ARG THR PRO HIS ALA ASP VAL LEU LEU ALA SEQRES 4 A 299 SER VAL GLY GLU ARG GLY VAL LEU CYS ASP PHE TYR ASP SEQRES 5 A 299 GLU GLY ALA ALA ASP THR TYR ARG ASP LEU ILE GLN ASP SEQRES 6 A 299 ALA ASP GLY THR SER GLU ALA ARG GLU PHE ALA THR ARG SEQRES 7 A 299 THR GLY PRO VAL SER GLY PRO VAL LEU GLU LEU ALA ALA SEQRES 8 A 299 GLY MET GLY ARG LEU THR PHE PRO PHE LEU ASP LEU GLY SEQRES 9 A 299 TRP GLU VAL THR ALA LEU GLU LEU SER THR SER VAL LEU SEQRES 10 A 299 ALA ALA PHE ARG LYS ARG LEU ALA GLU ALA PRO ALA ASP SEQRES 11 A 299 VAL ARG ASP ARG CYS THR LEU VAL GLN GLY ASP MET SER SEQRES 12 A 299 ALA PHE ALA LEU ASP LYS ARG PHE GLY THR VAL VAL ILE SEQRES 13 A 299 SER SER GLY SER ILE ASN GLU LEU ASP GLU ALA ASP ARG SEQRES 14 A 299 ARG GLY LEU TYR ALA SER VAL ARG GLU HIS LEU GLU PRO SEQRES 15 A 299 GLY GLY LYS PHE LEU LEU SER LEU ALA MET SER GLU ALA SEQRES 16 A 299 ALA GLU SER GLU PRO LEU GLU ARG LYS GLN GLU LEU PRO SEQRES 17 A 299 GLY ARG SER GLY ARG ARG TYR VAL LEU HIS VAL ARG HIS SEQRES 18 A 299 LEU PRO ALA GLU GLU ILE GLN GLU ILE THR ILE HIS PRO SEQRES 19 A 299 ALA ASP GLU THR THR ASP PRO PHE VAL VAL CYS THR HIS SEQRES 20 A 299 ARG ARG ARG LEU LEU ALA PRO ASP GLN VAL VAL ARG GLU SEQRES 21 A 299 LEU VAL ARG SER GLY PHE ASP VAL ILE ALA GLN THR PRO SEQRES 22 A 299 PHE ALA SER GLY GLY ALA GLY ARG LYS ASP MET VAL LEU SEQRES 23 A 299 VAL GLU ALA VAL MET PRO GLY ALA THR ALA ASP ALA ARG SEQRES 1 B 299 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLY GLY SEQRES 2 B 299 LEU VAL PRO ARG GLY SER MET SER ASN GLN LEU GLU ARG SEQRES 3 B 299 GLY PRO VAL ARG THR PRO HIS ALA ASP VAL LEU LEU ALA SEQRES 4 B 299 SER VAL GLY GLU ARG GLY VAL LEU CYS ASP PHE TYR ASP SEQRES 5 B 299 GLU GLY ALA ALA ASP THR TYR ARG ASP LEU ILE GLN ASP SEQRES 6 B 299 ALA ASP GLY THR SER GLU ALA ARG GLU PHE ALA THR ARG SEQRES 7 B 299 THR GLY PRO VAL SER GLY PRO VAL LEU GLU LEU ALA ALA SEQRES 8 B 299 GLY MET GLY ARG LEU THR PHE PRO PHE LEU ASP LEU GLY SEQRES 9 B 299 TRP GLU VAL THR ALA LEU GLU LEU SER THR SER VAL LEU SEQRES 10 B 299 ALA ALA PHE ARG LYS ARG LEU ALA GLU ALA PRO ALA ASP SEQRES 11 B 299 VAL ARG ASP ARG CYS THR LEU VAL GLN GLY ASP MET SER SEQRES 12 B 299 ALA PHE ALA LEU ASP LYS ARG PHE GLY THR VAL VAL ILE SEQRES 13 B 299 SER SER GLY SER ILE ASN GLU LEU ASP GLU ALA ASP ARG SEQRES 14 B 299 ARG GLY LEU TYR ALA SER VAL ARG GLU HIS LEU GLU PRO SEQRES 15 B 299 GLY GLY LYS PHE LEU LEU SER LEU ALA MET SER GLU ALA SEQRES 16 B 299 ALA GLU SER GLU PRO LEU GLU ARG LYS GLN GLU LEU PRO SEQRES 17 B 299 GLY ARG SER GLY ARG ARG TYR VAL LEU HIS VAL ARG HIS SEQRES 18 B 299 LEU PRO ALA GLU GLU ILE GLN GLU ILE THR ILE HIS PRO SEQRES 19 B 299 ALA ASP GLU THR THR ASP PRO PHE VAL VAL CYS THR HIS SEQRES 20 B 299 ARG ARG ARG LEU LEU ALA PRO ASP GLN VAL VAL ARG GLU SEQRES 21 B 299 LEU VAL ARG SER GLY PHE ASP VAL ILE ALA GLN THR PRO SEQRES 22 B 299 PHE ALA SER GLY GLY ALA GLY ARG LYS ASP MET VAL LEU SEQRES 23 B 299 VAL GLU ALA VAL MET PRO GLY ALA THR ALA ASP ALA ARG HET SFG A 400 27 HET SFG B 500 27 HETNAM SFG SINEFUNGIN HETSYN SFG ADENOSYL-ORNITHINE FORMUL 3 SFG 2(C15 H23 N7 O5) FORMUL 5 HOH *124(H2 O) HELIX 1 1 THR A 12 GLY A 23 1 12 HELIX 2 2 GLY A 49 ARG A 59 1 11 HELIX 3 3 LEU A 77 ASP A 83 1 7 HELIX 4 4 SER A 94 GLU A 107 1 14 HELIX 5 5 SER A 138 ASN A 143 1 6 HELIX 6 6 ASP A 146 GLU A 159 1 14 HELIX 7 7 SER A 174 SER A 179 1 6 HELIX 8 8 ALA A 234 SER A 245 1 12 HELIX 9 9 GLY B 49 ARG B 59 1 11 HELIX 10 10 LEU B 77 LEU B 84 1 8 HELIX 11 11 SER B 94 ALA B 108 1 15 HELIX 12 12 PRO B 109 ASP B 114 1 6 HELIX 13 13 SER B 138 ASN B 143 1 6 HELIX 14 14 ASP B 146 GLU B 159 1 14 HELIX 15 15 SER B 174 SER B 179 1 6 HELIX 16 16 ALA B 234 SER B 245 1 12 SHEET 1 A 5 GLY A 26 ASP A 30 0 SHEET 2 A 5 PHE A 223 LEU A 233 1 O VAL A 225 N VAL A 27 SHEET 3 A 5 LEU A 198 PRO A 215 -1 N ILE A 213 O CYS A 226 SHEET 4 A 5 TYR B 196 ILE B 213 -1 O VAL B 197 N HIS A 214 SHEET 5 A 5 ARG B 184 LEU B 188 -1 N LEU B 188 O TYR B 196 SHEET 1 B 4 GLU A 183 LYS A 185 0 SHEET 2 B 4 LEU A 198 PRO A 215 -1 O VAL A 200 N ARG A 184 SHEET 3 B 4 TYR B 196 ILE B 213 -1 O VAL B 197 N HIS A 214 SHEET 4 B 4 CYS B 226 LEU B 233 -1 O ARG B 230 N GLN B 209 SHEET 1 C 7 CYS A 116 GLN A 120 0 SHEET 2 C 7 VAL A 88 GLU A 92 1 N ALA A 90 O THR A 117 SHEET 3 C 7 VAL A 67 LEU A 70 1 N GLU A 69 O THR A 89 SHEET 4 C 7 PHE A 132 ILE A 137 1 O THR A 134 N LEU A 68 SHEET 5 C 7 LEU A 161 ALA A 172 1 O LEU A 168 N VAL A 135 SHEET 6 C 7 MET A 265 VAL A 271 -1 O VAL A 268 N LEU A 169 SHEET 7 C 7 ASP A 248 PHE A 255 -1 N ASP A 248 O VAL A 271 SHEET 1 D 7 CYS B 116 GLN B 120 0 SHEET 2 D 7 VAL B 88 GLU B 92 1 N ALA B 90 O THR B 117 SHEET 3 D 7 VAL B 67 GLU B 69 1 N VAL B 67 O THR B 89 SHEET 4 D 7 PHE B 132 ILE B 137 1 O VAL B 136 N LEU B 68 SHEET 5 D 7 LEU B 161 ALA B 172 1 O LEU B 168 N VAL B 135 SHEET 6 D 7 MET B 265 VAL B 271 -1 O ALA B 270 N PHE B 167 SHEET 7 D 7 ASP B 248 PHE B 255 -1 N THR B 253 O LEU B 267 CISPEP 1 ASP A 221 PRO A 222 0 -5.76 SITE 1 AC1 15 ALA A 71 ALA A 72 GLY A 73 ARG A 76 SITE 2 AC1 15 GLU A 92 LEU A 93 GLY A 121 ASP A 122 SITE 3 AC1 15 MET A 123 SER A 141 GLU A 144 HOH A 374 SITE 4 AC1 15 HOH A 375 HOH A 379 HOH A 389 SITE 1 AC2 14 ALA B 71 GLY B 73 ARG B 76 GLU B 92 SITE 2 AC2 14 LEU B 93 GLY B 121 ASP B 122 MET B 123 SITE 3 AC2 14 SER B 141 GLU B 144 HOH B 356 HOH B 358 SITE 4 AC2 14 HOH B 377 HOH B 388 CRYST1 126.611 71.918 75.062 90.00 103.82 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007898 0.000000 0.001943 0.00000 SCALE2 0.000000 0.013905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013720 0.00000