HEADER TRANSFERASE 02-FEB-09 3G3S TITLE CRYSTAL STRUCTURE OF GCN5-RELATED N-ACETYLTRANSFERASE-LIKE PROTEIN TITLE 2 (ZP_00874857) (ZP_00874857.1) FROM STREPTOCOCCUS SUIS 89/1591 AT 1.80 TITLE 3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCN5-RELATED N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SUIS; SOURCE 3 ORGANISM_TAXID: 286604; SOURCE 4 STRAIN: 89/1591; SOURCE 5 GENE: SSUIDRAFT_1367, ZP_00874857.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ZP_00874857.1, GCN5-RELATED N-ACETYLTRANSFERASE-LIKE PROTEIN KEYWDS 2 (ZP_00874857), ACETYLTRANSFERASE (GNAT) FAMILY, STRUCTURAL GENOMICS, KEYWDS 3 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 4 INITIATIVE, PSI-2, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3G3S 1 REMARK SEQADV LINK REVDAT 4 24-JUL-19 3G3S 1 REMARK LINK REVDAT 3 25-OCT-17 3G3S 1 REMARK REVDAT 2 13-JUL-11 3G3S 1 VERSN REVDAT 1 10-FEB-09 3G3S 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF GCN5-RELATED N-ACETYLTRANSFERASE-LIKE JRNL TITL 2 PROTEIN (ZP_00874857) (ZP_00874857.1) FROM STREPTOCOCCUS JRNL TITL 3 SUIS 89/1591 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 52068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2652 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3571 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3904 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 532 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.03000 REMARK 3 B22 (A**2) : -2.07000 REMARK 3 B33 (A**2) : 4.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.731 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4101 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2727 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5567 ; 1.576 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6633 ; 0.965 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 516 ; 3.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;31.546 ;24.316 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 672 ;10.642 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;12.260 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 605 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4660 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 862 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 899 ; 0.199 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3039 ; 0.169 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1992 ; 0.187 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 2168 ; 0.090 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 652 ; 0.213 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.054 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.041 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.180 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.189 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.228 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2520 ; 1.814 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1044 ; 0.472 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4027 ; 3.004 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1654 ; 5.266 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1540 ; 7.520 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. CACODYLATE ANION, NA ION AND ETHYLENE REMARK 3 GLYCOL FROM CRYSTALLIZATION AND CRYOPROTECTANT ARE MODELED INTO REMARK 3 THIS STRUCTURE, RESPECTIVELY. REMARK 4 REMARK 4 3G3S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1000051386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97821, 0.97879 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52108 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.285 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 4.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.75300 REMARK 200 R SYM FOR SHELL (I) : 0.75300 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.20M MGCL2, 10.0% PEG 3000, REMARK 280 0.1M CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.69750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.88150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.88150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.69750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 CD NE CZ NH1 NH2 REMARK 470 SER A 36 OG REMARK 470 ARG A 48 NH1 NH2 REMARK 470 LYS A 114 CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 GLU A 140 CD OE1 OE2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 LYS A 229 CD CE NZ REMARK 470 LYS A 233 CD CE NZ REMARK 470 ARG A 248 CD NE CZ NH1 NH2 REMARK 470 GLU B 3 CD OE1 OE2 REMARK 470 ARG B 7 CG CD NE CZ NH1 NH2 REMARK 470 SER B 36 OG REMARK 470 GLN B 37 CG CD OE1 NE2 REMARK 470 GLU B 87 CD OE1 OE2 REMARK 470 ASP B 91 OD1 OD2 REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 LYS B 240 CE NZ REMARK 470 ARG B 248 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 4 O SER B 36 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 162 CB CYS A 162 SG -0.119 REMARK 500 MSE B 28 SE MSE B 28 CE -0.583 REMARK 500 CYS B 203 CB CYS B 203 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 48 -50.39 -143.57 REMARK 500 ASP A 239 -71.20 -96.02 REMARK 500 ARG B 48 -50.84 -127.22 REMARK 500 ASP B 239 -70.18 -96.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 249 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 25 O REMARK 620 2 HOH A 276 O 82.6 REMARK 620 3 HOH A 299 O 91.6 173.1 REMARK 620 4 HOH A 413 O 100.2 86.8 90.5 REMARK 620 5 GLU B 25 O 153.3 77.0 109.6 95.8 REMARK 620 6 HOH B 271 O 79.2 82.8 99.9 169.5 81.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 250 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 380027 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3G3S A 1 248 UNP Q302C5 Q302C5_STRSU 1 248 DBREF 3G3S B 1 248 UNP Q302C5 Q302C5_STRSU 1 248 SEQADV 3G3S GLY A 0 UNP Q302C5 EXPRESSION TAG SEQADV 3G3S GLY B 0 UNP Q302C5 EXPRESSION TAG SEQRES 1 A 249 GLY MSE ALA GLU GLN MSE ARG ARG VAL ALA ARG LEU PHE SEQRES 2 A 249 GLY ASP TRP PRO GLU THR ILE ILE TRP THR CYS LEU GLU SEQRES 3 A 249 GLY THR MSE GLY ASP ILE TYR VAL ASP ASP SER GLN SER SEQRES 4 A 249 PRO GLN SER ALA LEU ALA LEU TYR GLY ARG GLN SER PHE SEQRES 5 A 249 PHE GLY PHE LEU ALA GLY GLN PRO HIS ARG ASP LEU LEU SEQRES 6 A 249 LYS ILE CYS GLU GLY LYS ASN ILE ILE LEU VAL PRO GLN SEQRES 7 A 249 ASN GLN ALA TRP SER ASP LEU ILE GLU GLU VAL TYR GLY SEQRES 8 A 249 ASP GLY VAL ARG PHE PHE THR ARG TYR ALA THR LYS LYS SEQRES 9 A 249 ASP THR GLU PHE ASP LEU GLY HIS LEU GLN LYS LEU VAL SEQRES 10 A 249 ASP ASP LEU PRO GLU SER PHE ASP MSE LYS LEU ILE ASP SEQRES 11 A 249 ARG ASN LEU TYR GLU THR CYS LEU VAL GLU GLU TRP SER SEQRES 12 A 249 ARG ASP LEU VAL GLY ASN TYR ILE ASP VAL GLU GLN PHE SEQRES 13 A 249 LEU ASP LEU GLY LEU GLY CYS VAL ILE LEU HIS LYS GLY SEQRES 14 A 249 GLN VAL VAL SER GLY ALA SER SER TYR ALA SER TYR SER SEQRES 15 A 249 ALA GLY ILE GLU ILE GLU VAL ASP THR ARG GLU ASP TYR SEQRES 16 A 249 ARG GLY LEU GLY LEU ALA LYS ALA CYS ALA ALA GLN LEU SEQRES 17 A 249 ILE LEU ALA CYS LEU ASP ARG GLY LEU TYR PRO SER TRP SEQRES 18 A 249 ASP ALA HIS THR LEU THR SER LEU LYS LEU ALA GLU LYS SEQRES 19 A 249 LEU GLY TYR GLU LEU ASP LYS ALA TYR GLN ALA TYR GLU SEQRES 20 A 249 TRP ARG SEQRES 1 B 249 GLY MSE ALA GLU GLN MSE ARG ARG VAL ALA ARG LEU PHE SEQRES 2 B 249 GLY ASP TRP PRO GLU THR ILE ILE TRP THR CYS LEU GLU SEQRES 3 B 249 GLY THR MSE GLY ASP ILE TYR VAL ASP ASP SER GLN SER SEQRES 4 B 249 PRO GLN SER ALA LEU ALA LEU TYR GLY ARG GLN SER PHE SEQRES 5 B 249 PHE GLY PHE LEU ALA GLY GLN PRO HIS ARG ASP LEU LEU SEQRES 6 B 249 LYS ILE CYS GLU GLY LYS ASN ILE ILE LEU VAL PRO GLN SEQRES 7 B 249 ASN GLN ALA TRP SER ASP LEU ILE GLU GLU VAL TYR GLY SEQRES 8 B 249 ASP GLY VAL ARG PHE PHE THR ARG TYR ALA THR LYS LYS SEQRES 9 B 249 ASP THR GLU PHE ASP LEU GLY HIS LEU GLN LYS LEU VAL SEQRES 10 B 249 ASP ASP LEU PRO GLU SER PHE ASP MSE LYS LEU ILE ASP SEQRES 11 B 249 ARG ASN LEU TYR GLU THR CYS LEU VAL GLU GLU TRP SER SEQRES 12 B 249 ARG ASP LEU VAL GLY ASN TYR ILE ASP VAL GLU GLN PHE SEQRES 13 B 249 LEU ASP LEU GLY LEU GLY CYS VAL ILE LEU HIS LYS GLY SEQRES 14 B 249 GLN VAL VAL SER GLY ALA SER SER TYR ALA SER TYR SER SEQRES 15 B 249 ALA GLY ILE GLU ILE GLU VAL ASP THR ARG GLU ASP TYR SEQRES 16 B 249 ARG GLY LEU GLY LEU ALA LYS ALA CYS ALA ALA GLN LEU SEQRES 17 B 249 ILE LEU ALA CYS LEU ASP ARG GLY LEU TYR PRO SER TRP SEQRES 18 B 249 ASP ALA HIS THR LEU THR SER LEU LYS LEU ALA GLU LYS SEQRES 19 B 249 LEU GLY TYR GLU LEU ASP LYS ALA TYR GLN ALA TYR GLU SEQRES 20 B 249 TRP ARG MODRES 3G3S MSE A 1 MET SELENOMETHIONINE MODRES 3G3S MSE A 5 MET SELENOMETHIONINE MODRES 3G3S MSE A 28 MET SELENOMETHIONINE MODRES 3G3S MSE A 125 MET SELENOMETHIONINE MODRES 3G3S MSE B 1 MET SELENOMETHIONINE MODRES 3G3S MSE B 5 MET SELENOMETHIONINE MODRES 3G3S MSE B 28 MET SELENOMETHIONINE MODRES 3G3S MSE B 125 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 5 8 HET MSE A 28 16 HET MSE A 125 8 HET MSE B 1 8 HET MSE B 5 8 HET MSE B 28 8 HET MSE B 125 8 HET NA A 249 1 HET CAC A 250 5 HET EDO A 251 4 HET EDO A 252 4 HET EDO A 253 4 HET EDO A 254 4 HET EDO B 249 4 HET EDO B 250 4 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM CAC CACODYLATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN CAC DIMETHYLARSINATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 NA NA 1+ FORMUL 4 CAC C2 H6 AS O2 1- FORMUL 5 EDO 6(C2 H6 O2) FORMUL 11 HOH *532(H2 O) HELIX 1 1 GLY A 0 GLY A 13 1 14 HELIX 2 2 GLU A 17 GLY A 26 1 10 HELIX 3 3 HIS A 60 GLU A 68 1 9 HELIX 4 4 ASN A 78 GLY A 90 1 13 HELIX 5 5 ASP A 108 ASP A 118 1 11 HELIX 6 6 ASP A 129 GLU A 139 1 11 HELIX 7 7 SER A 142 VAL A 146 5 5 HELIX 8 8 ASP A 151 GLY A 159 1 9 HELIX 9 9 GLU A 192 ARG A 195 5 4 HELIX 10 10 GLY A 198 ARG A 214 1 17 HELIX 11 11 THR A 224 GLY A 235 1 12 HELIX 12 12 GLY B 0 GLY B 13 1 14 HELIX 13 13 GLU B 17 GLY B 26 1 10 HELIX 14 14 HIS B 60 GLU B 68 1 9 HELIX 15 15 ASN B 78 GLY B 90 1 13 HELIX 16 16 ASP B 108 LEU B 119 1 12 HELIX 17 17 ASP B 129 GLU B 139 1 11 HELIX 18 18 GLU B 140 VAL B 146 5 7 HELIX 19 19 ASP B 151 GLY B 159 1 9 HELIX 20 20 GLY B 198 ARG B 214 1 17 HELIX 21 21 THR B 224 LEU B 234 1 11 SHEET 1 A 7 ASP A 30 VAL A 33 0 SHEET 2 A 7 SER A 41 GLY A 47 -1 O LEU A 43 N TYR A 32 SHEET 3 A 7 PHE A 51 GLY A 57 -1 O PHE A 54 N ALA A 44 SHEET 4 A 7 ILE A 72 PRO A 76 1 O VAL A 75 N GLY A 53 SHEET 5 A 7 LEU A 238 TRP A 247 -1 O TYR A 245 N LEU A 74 SHEET 6 A 7 VAL A 93 THR A 101 -1 N ARG A 94 O GLU A 246 SHEET 7 A 7 ASP A 221 ALA A 222 -1 O ALA A 222 N TYR A 99 SHEET 1 B 5 ASP A 124 LEU A 127 0 SHEET 2 B 5 GLY A 161 HIS A 166 -1 O LEU A 165 N ASP A 124 SHEET 3 B 5 GLN A 169 TYR A 180 -1 O SER A 172 N ILE A 164 SHEET 4 B 5 GLY A 183 THR A 190 -1 O GLU A 187 N SER A 175 SHEET 5 B 5 TYR A 217 SER A 219 1 O SER A 219 N ILE A 184 SHEET 1 C 7 ASP B 30 VAL B 33 0 SHEET 2 C 7 SER B 41 GLY B 47 -1 O LEU B 43 N TYR B 32 SHEET 3 C 7 PHE B 51 GLY B 57 -1 O ALA B 56 N ALA B 42 SHEET 4 C 7 ILE B 72 PRO B 76 1 O VAL B 75 N GLY B 53 SHEET 5 C 7 LEU B 238 TRP B 247 -1 O TYR B 245 N LEU B 74 SHEET 6 C 7 VAL B 93 THR B 101 -1 N ALA B 100 O ASP B 239 SHEET 7 C 7 ASP B 221 ALA B 222 -1 O ALA B 222 N TYR B 99 SHEET 1 D 5 PHE B 123 LEU B 127 0 SHEET 2 D 5 GLY B 161 HIS B 166 -1 O VAL B 163 N LYS B 126 SHEET 3 D 5 GLN B 169 TYR B 180 -1 O VAL B 171 N ILE B 164 SHEET 4 D 5 GLY B 183 THR B 190 -1 O GLU B 185 N TYR B 177 SHEET 5 D 5 TYR B 217 SER B 219 1 O SER B 219 N ILE B 186 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C GLN A 4 N MSE A 5 1555 1555 1.33 LINK C MSE A 5 N ARG A 6 1555 1555 1.33 LINK C THR A 27 N AMSE A 28 1555 1555 1.33 LINK C THR A 27 N BMSE A 28 1555 1555 1.33 LINK C AMSE A 28 N GLY A 29 1555 1555 1.33 LINK C BMSE A 28 N GLY A 29 1555 1555 1.33 LINK C ASP A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N LYS A 126 1555 1555 1.33 LINK C GLY B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N ALA B 2 1555 1555 1.33 LINK C GLN B 4 N MSE B 5 1555 1555 1.31 LINK C MSE B 5 N ARG B 6 1555 1555 1.33 LINK C THR B 27 N MSE B 28 1555 1555 1.34 LINK C MSE B 28 N GLY B 29 1555 1555 1.34 LINK C ASP B 124 N MSE B 125 1555 1555 1.32 LINK C MSE B 125 N LYS B 126 1555 1555 1.34 LINK O GLU A 25 NA NA A 249 1555 1555 2.44 LINK NA NA A 249 O HOH A 276 1555 1555 2.62 LINK NA NA A 249 O HOH A 299 1555 1555 2.35 LINK NA NA A 249 O HOH A 413 1555 1555 2.68 LINK NA NA A 249 O GLU B 25 1555 1555 2.40 LINK NA NA A 249 O HOH B 271 1555 1555 2.41 SITE 1 AC1 6 GLU A 25 HOH A 276 HOH A 299 HOH A 413 SITE 2 AC1 6 GLU B 25 HOH B 271 SITE 1 AC2 10 ILE A 186 VAL A 188 TRP A 220 ASP A 221 SITE 2 AC2 10 ALA A 222 HIS A 223 SER A 227 EDO A 252 SITE 3 AC2 10 HOH A 290 HOH A 314 SITE 1 AC3 7 ALA A 9 LEU A 24 HOH A 276 HOH A 308 SITE 2 AC3 7 HOH A 393 GLU B 25 GLY B 26 SITE 1 AC4 9 PHE A 52 ARG A 98 TYR A 177 ILE A 186 SITE 2 AC4 9 GLU A 187 ASP A 221 CAC A 250 HOH A 259 SITE 3 AC4 9 HOH A 309 SITE 1 AC5 6 TRP A 15 GLN A 77 HOH A 293 HOH A 303 SITE 2 AC5 6 ARG B 195 HOH B 343 SITE 1 AC6 10 PRO A 76 GLN A 77 ASN A 78 GLN A 79 SITE 2 AC6 10 GLN A 243 HOH A 304 HOH A 353 HOH A 392 SITE 3 AC6 10 ASP B 193 HOH B 343 SITE 1 AC7 7 ARG B 98 ILE B 186 GLU B 187 ASP B 221 SITE 2 AC7 7 EDO B 250 HOH B 253 HOH B 405 SITE 1 AC8 7 ILE B 186 VAL B 188 TRP B 220 ASP B 221 SITE 2 AC8 7 EDO B 249 HOH B 333 HOH B 493 CRYST1 71.395 83.880 93.763 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010665 0.00000