HEADER TRANSFERASE 05-FEB-09 3G5D
TITLE KINASE DOMAIN OF CSRC IN COMPLEX WITH DASATINIB
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: KINASE DOMAIN, UNP RESIDUES 251-533;
COMPND 5 SYNONYM: PP60C-SRC, P60-SRC, C-SRC;
COMPND 6 EC: 2.7.10.2;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS;
SOURCE 3 ORGANISM_COMMON: CHICKEN;
SOURCE 4 ORGANISM_TAXID: 9031;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSKB3
KEYWDS TYPE II, DFG-OUT, TYROSINE-PROTEIN KINASE, DASATINIB, ATP-BINDING,
KEYWDS 2 KINASE, LIPOPROTEIN, MYRISTATE, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN,
KEYWDS 3 PROTO-ONCOGENE, SH2 DOMAIN, SH3 DOMAIN, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR C.GRUTTER,S.KLUTER,D.RAUH
REVDAT 6 01-NOV-23 3G5D 1 REMARK
REVDAT 5 10-NOV-21 3G5D 1 REMARK SEQADV
REVDAT 4 13-JUL-11 3G5D 1 VERSN
REVDAT 3 20-OCT-09 3G5D 1 HETSYN
REVDAT 2 21-JUL-09 3G5D 1 JRNL
REVDAT 1 02-JUN-09 3G5D 0
JRNL AUTH M.GETLIK,C.GRUTTER,J.R.SIMARD,S.KLUTER,M.RABILLER,H.B.RODE,
JRNL AUTH 2 A.ROBUBI,D.RAUH
JRNL TITL HYBRID COMPOUND DESIGN TO OVERCOME THE GATEKEEPER T338M
JRNL TITL 2 MUTATION IN CSRC
JRNL REF J.MED.CHEM. V. 52 3915 2009
JRNL REFN ISSN 0022-2623
JRNL PMID 19462975
JRNL DOI 10.1021/JM9002928
REMARK 2
REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.05
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 37431
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.207
REMARK 3 R VALUE (WORKING SET) : 0.206
REMARK 3 FREE R VALUE : 0.257
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.500
REMARK 3 FREE R VALUE TEST SET COUNT : 936
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2678
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 BIN R VALUE (WORKING SET) : 0.2350
REMARK 3 BIN FREE R VALUE SET COUNT : 68
REMARK 3 BIN FREE R VALUE : 0.2660
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4138
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 78
REMARK 3 SOLVENT ATOMS : 225
REMARK 3
REMARK 3 B VALUES.
REMARK 3 B VALUE TYPE : LIKELY RESIDUAL
REMARK 3 FROM WILSON PLOT (A**2) : 34.39
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.60
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.15000
REMARK 3 B22 (A**2) : 0.85000
REMARK 3 B33 (A**2) : -0.94000
REMARK 3 B12 (A**2) : -0.01000
REMARK 3 B13 (A**2) : -0.12000
REMARK 3 B23 (A**2) : -0.16000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.223
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.199
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.878
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4316 ; 0.015 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5842 ; 1.549 ; 1.996
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 505 ; 6.115 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;37.594 ;23.814
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 747 ;16.218 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.338 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 621 ; 0.094 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3264 ; 0.006 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1991 ; 0.207 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2876 ; 0.307 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 268 ; 0.169 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.217 ; 0.200
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.215 ; 0.200
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2649 ; 0.882 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4130 ; 1.453 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1966 ; 2.157 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1712 ; 3.319 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 258 A 533
REMARK 3 ORIGIN FOR THE GROUP (A): 0.8050 -29.9060 2.9980
REMARK 3 T TENSOR
REMARK 3 T11: -0.0543 T22: -0.0331
REMARK 3 T33: -0.0336 T12: 0.0398
REMARK 3 T13: -0.0024 T23: 0.0077
REMARK 3 L TENSOR
REMARK 3 L11: 0.8059 L22: 2.2128
REMARK 3 L33: 0.9785 L12: 0.5380
REMARK 3 L13: 0.1890 L23: -0.2254
REMARK 3 S TENSOR
REMARK 3 S11: -0.0523 S12: 0.0198 S13: 0.0185
REMARK 3 S21: -0.3464 S22: 0.0283 S23: -0.0279
REMARK 3 S31: 0.0734 S32: -0.0849 S33: 0.0240
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 258 B 533
REMARK 3 ORIGIN FOR THE GROUP (A): 8.2810 1.8090 23.8170
REMARK 3 T TENSOR
REMARK 3 T11: -0.0459 T22: -0.0380
REMARK 3 T33: -0.0239 T12: -0.0408
REMARK 3 T13: -0.0020 T23: 0.0305
REMARK 3 L TENSOR
REMARK 3 L11: 0.6085 L22: 2.2315
REMARK 3 L33: 0.9245 L12: -0.2556
REMARK 3 L13: 0.2052 L23: -0.2429
REMARK 3 S TENSOR
REMARK 3 S11: 0.0155 S12: 0.0055 S13: -0.0313
REMARK 3 S21: 0.3709 S22: -0.0570 S23: 0.0049
REMARK 3 S31: -0.0430 S32: 0.1015 S33: 0.0415
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 3G5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-09.
REMARK 100 THE DEPOSITION ID IS D_1000051443.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 11-OCT-08
REMARK 200 TEMPERATURE (KELVIN) : 90
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X10SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.99990
REMARK 200 MONOCHROMATOR : SI(111)
REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE
REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37432
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200
REMARK 200 RESOLUTION RANGE LOW (A) : 40.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9
REMARK 200 DATA REDUNDANCY : 3.700
REMARK 200 R MERGE (I) : 0.05400
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.7500
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30
REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6
REMARK 200 DATA REDUNDANCY IN SHELL : 3.69
REMARK 200 R MERGE FOR SHELL (I) : 0.14500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 9.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 2OIQ
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 59.01
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 20000, 15% GLYCEROL, 85 MM
REMARK 280 MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 248
REMARK 465 HIS A 249
REMARK 465 MET A 250
REMARK 465 GLN A 251
REMARK 465 THR A 252
REMARK 465 GLN A 253
REMARK 465 GLY A 254
REMARK 465 LEU A 255
REMARK 465 ALA A 256
REMARK 465 CYS A 277
REMARK 465 PHE A 278
REMARK 465 GLY A 279
REMARK 465 LYS A 298
REMARK 465 PRO A 299
REMARK 465 GLY A 300
REMARK 465 THR A 301
REMARK 465 MET A 302
REMARK 465 ILE A 411
REMARK 465 GLU A 412
REMARK 465 ASP A 413
REMARK 465 ASN A 414
REMARK 465 GLU A 415
REMARK 465 TYR A 416
REMARK 465 THR A 417
REMARK 465 ALA A 418
REMARK 465 ARG A 419
REMARK 465 GLN A 420
REMARK 465 GLY A 421
REMARK 465 ALA A 422
REMARK 465 LYS A 423
REMARK 465 GLY B 248
REMARK 465 HIS B 249
REMARK 465 MET B 250
REMARK 465 GLN B 251
REMARK 465 THR B 252
REMARK 465 GLN B 253
REMARK 465 GLY B 254
REMARK 465 LEU B 255
REMARK 465 ALA B 256
REMARK 465 LYS B 257
REMARK 465 CYS B 277
REMARK 465 PHE B 278
REMARK 465 GLY B 279
REMARK 465 PRO B 299
REMARK 465 GLY B 300
REMARK 465 THR B 301
REMARK 465 ILE B 411
REMARK 465 GLU B 412
REMARK 465 ASP B 413
REMARK 465 ASN B 414
REMARK 465 GLU B 415
REMARK 465 TYR B 416
REMARK 465 THR B 417
REMARK 465 ALA B 418
REMARK 465 ARG B 419
REMARK 465 GLN B 420
REMARK 465 GLY B 421
REMARK 465 ALA B 422
REMARK 465 LYS B 423
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2
REMARK 470 ARG B 409 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU A 270 -85.10 -126.47
REMARK 500 ARG A 385 -11.33 81.03
REMARK 500 ASP A 386 35.31 -140.80
REMARK 500 ASP A 404 77.91 52.53
REMARK 500 LEU B 297 -70.34 -107.14
REMARK 500 ARG B 385 -12.02 84.20
REMARK 500 ASP B 386 41.92 -142.04
REMARK 500 ASP B 404 77.85 57.13
REMARK 500 PRO B 425 101.46 -55.02
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1N1 A 1
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 534
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1N1 B 1
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 534
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 3F3T RELATED DB: PDB
REMARK 900 RELATED ID: 3F3U RELATED DB: PDB
REMARK 900 RELATED ID: 3F3V RELATED DB: PDB
REMARK 900 RELATED ID: 3F3W RELATED DB: PDB
DBREF 3G5D A 251 533 UNP P00523 SRC_CHICK 251 533
DBREF 3G5D B 251 533 UNP P00523 SRC_CHICK 251 533
SEQADV 3G5D GLY A 248 UNP P00523 EXPRESSION TAG
SEQADV 3G5D HIS A 249 UNP P00523 EXPRESSION TAG
SEQADV 3G5D MET A 250 UNP P00523 EXPRESSION TAG
SEQADV 3G5D CYS A 345 UNP P00523 SER 345 ENGINEERED MUTATION
SEQADV 3G5D GLY B 248 UNP P00523 EXPRESSION TAG
SEQADV 3G5D HIS B 249 UNP P00523 EXPRESSION TAG
SEQADV 3G5D MET B 250 UNP P00523 EXPRESSION TAG
SEQADV 3G5D CYS B 345 UNP P00523 SER 345 ENGINEERED MUTATION
SEQRES 1 A 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP
SEQRES 2 A 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU
SEQRES 3 A 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP
SEQRES 4 A 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO
SEQRES 5 A 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN
SEQRES 6 A 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU
SEQRES 7 A 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR
SEQRES 8 A 286 GLU TYR MET SER LYS GLY CYS LEU LEU ASP PHE LEU LYS
SEQRES 9 A 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL
SEQRES 10 A 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL
SEQRES 11 A 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA
SEQRES 12 A 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA
SEQRES 13 A 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR
SEQRES 14 A 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR
SEQRES 15 A 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS
SEQRES 16 A 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU
SEQRES 17 A 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN
SEQRES 18 A 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET
SEQRES 19 A 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU
SEQRES 20 A 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO
SEQRES 21 A 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE
SEQRES 22 A 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU
SEQRES 1 B 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP
SEQRES 2 B 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU
SEQRES 3 B 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP
SEQRES 4 B 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO
SEQRES 5 B 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN
SEQRES 6 B 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU
SEQRES 7 B 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR
SEQRES 8 B 286 GLU TYR MET SER LYS GLY CYS LEU LEU ASP PHE LEU LYS
SEQRES 9 B 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL
SEQRES 10 B 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL
SEQRES 11 B 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA
SEQRES 12 B 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA
SEQRES 13 B 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR
SEQRES 14 B 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR
SEQRES 15 B 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS
SEQRES 16 B 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU
SEQRES 17 B 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN
SEQRES 18 B 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET
SEQRES 19 B 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU
SEQRES 20 B 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO
SEQRES 21 B 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE
SEQRES 22 B 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU
HET 1N1 A 1 33
HET GOL A 534 6
HET 1N1 B 1 33
HET GOL B 534 6
HETNAM 1N1 N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)
HETNAM 2 1N1 PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-
HETNAM 3 1N1 THIAZOLE-5-CARBOXAMIDE
HETNAM GOL GLYCEROL
HETSYN 1N1 DASATINIB
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 3 1N1 2(C22 H26 CL N7 O2 S)
FORMUL 4 GOL 2(C3 H8 O3)
FORMUL 7 HOH *225(H2 O)
HELIX 1 1 PRO A 263 GLU A 265 5 3
HELIX 2 2 PRO A 304 LEU A 317 1 14
HELIX 3 3 CYS A 345 GLY A 352 1 8
HELIX 4 4 MET A 354 LEU A 358 5 5
HELIX 5 5 ARG A 359 MET A 380 1 22
HELIX 6 6 ARG A 388 ALA A 390 5 3
HELIX 7 7 GLU A 396 LEU A 398 5 3
HELIX 8 8 ALA A 430 GLY A 437 1 8
HELIX 9 9 THR A 440 THR A 457 1 18
HELIX 10 10 VAL A 467 ARG A 477 1 11
HELIX 11 11 PRO A 488 TRP A 499 1 12
HELIX 12 12 ASP A 502 ARG A 506 5 5
HELIX 13 13 THR A 508 ASP A 518 1 11
HELIX 14 14 ASP A 518 THR A 523 1 6
HELIX 15 15 PRO B 263 GLU B 265 5 3
HELIX 16 16 SER B 303 LEU B 317 1 15
HELIX 17 17 CYS B 345 GLY B 352 1 8
HELIX 18 18 GLU B 353 TYR B 357 5 5
HELIX 19 19 ARG B 359 MET B 380 1 22
HELIX 20 20 ARG B 388 ALA B 390 5 3
HELIX 21 21 GLU B 396 LEU B 398 5 3
HELIX 22 22 PRO B 425 THR B 429 5 5
HELIX 23 23 ALA B 430 GLY B 437 1 8
HELIX 24 24 THR B 440 THR B 457 1 18
HELIX 25 25 VAL B 467 ARG B 477 1 11
HELIX 26 26 PRO B 488 TRP B 499 1 12
HELIX 27 27 ASP B 502 ARG B 506 5 5
HELIX 28 28 THR B 508 ASP B 518 1 11
HELIX 29 29 ASP B 518 THR B 523 1 6
SHEET 1 A 5 LEU A 267 LYS A 272 0
SHEET 2 A 5 VAL A 281 TRP A 286 -1 O MET A 283 N VAL A 271
SHEET 3 A 5 THR A 290 THR A 296 -1 O ILE A 294 N TRP A 282
SHEET 4 A 5 TYR A 335 GLU A 339 -1 O ILE A 336 N LYS A 295
SHEET 5 A 5 LEU A 325 VAL A 329 -1 N TYR A 326 O VAL A 337
SHEET 1 B 2 ILE A 392 VAL A 394 0
SHEET 2 B 2 CYS A 400 VAL A 402 -1 O LYS A 401 N LEU A 393
SHEET 1 C 5 LEU B 267 GLY B 274 0
SHEET 2 C 5 VAL B 281 TRP B 286 -1 O MET B 283 N VAL B 271
SHEET 3 C 5 THR B 290 LYS B 295 -1 O VAL B 292 N GLY B 284
SHEET 4 C 5 TYR B 335 THR B 338 -1 O ILE B 336 N LYS B 295
SHEET 5 C 5 LEU B 325 VAL B 329 -1 N TYR B 326 O VAL B 337
SHEET 1 D 2 ILE B 392 VAL B 394 0
SHEET 2 D 2 CYS B 400 VAL B 402 -1 O LYS B 401 N LEU B 393
CISPEP 1 GLU A 332 PRO A 333 0 -4.20
CISPEP 2 GLU B 332 PRO B 333 0 -11.11
SITE 1 AC1 14 LEU A 273 VAL A 281 ALA A 293 LYS A 295
SITE 2 AC1 14 GLU A 310 ILE A 336 THR A 338 GLU A 339
SITE 3 AC1 14 TYR A 340 MET A 341 SER A 342 GLY A 344
SITE 4 AC1 14 LEU A 393 ALA A 403
SITE 1 AC2 6 PRO A 361 GLN A 362 ASP A 365 LEU A 398
SITE 2 AC2 6 ARG A 438 HOH A 538
SITE 1 AC3 15 HOH B 177 LEU B 273 VAL B 281 ALA B 293
SITE 2 AC3 15 LYS B 295 GLU B 310 THR B 338 GLU B 339
SITE 3 AC3 15 TYR B 340 MET B 341 SER B 342 LYS B 343
SITE 4 AC3 15 GLY B 344 LEU B 393 ALA B 403
SITE 1 AC4 2 HOH B 196 GLN B 362
CRYST1 42.190 63.690 74.580 78.71 89.96 90.28 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.023702 0.000117 -0.000039 0.00000
SCALE2 0.000000 0.015701 -0.003133 0.00000
SCALE3 0.000000 0.000000 0.013673 0.00000