HEADER IMMUNE SYSTEM 06-FEB-09 3G6A TITLE CRYSTAL STRUCTURE OF ANTI-IL-13 ANTIBODY CNTO607 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CNTO607 FAB LIGHT CHAIN; COMPND 3 CHAIN: L, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CNTO607 FAB HEAVY CHAIN; COMPND 7 CHAIN: H, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 8 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 9 EXPRESSION_SYSTEM_CELL: HUMAN EMBRYONIC KIDNEY 293 CELLS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 17 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 18 EXPRESSION_SYSTEM_CELL: HUMAN EMBRYONIC KIDNEY 293 CELLS KEYWDS IL-13, ANTIBODY, FAB, MONOCLONAL ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,G.L.GILLILAND REVDAT 2 26-MAY-09 3G6A 1 JRNL REVDAT 1 28-APR-09 3G6A 0 JRNL AUTH A.TEPLYAKOV,G.OBMOLOVA,S.J.WU,J.LUO,J.KANG, JRNL AUTH 2 K.O'NEIL,G.L.GILLILAND JRNL TITL EPITOPE MAPPING OF ANTI-INTERLEUKIN-13 JRNL TITL 2 NEUTRALIZING ANTIBODY CNTO607. JRNL REF J.MOL.BIOL. V. 389 115 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19361524 JRNL DOI 10.1016/J.JMB.2009.03.076 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 49847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2674 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3636 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6468 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.84000 REMARK 3 B22 (A**2) : -0.84000 REMARK 3 B33 (A**2) : 1.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.437 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6640 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9080 ; 1.810 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 860 ; 7.395 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;34.906 ;24.803 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 988 ;18.362 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;18.316 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1020 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5064 ; 0.000 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2754 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4428 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 394 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 84 ; 0.259 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4397 ; 5.871 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6944 ; 8.551 ; 4.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2630 ;13.526 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2136 ;15.056 ; 8.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3G6A COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-09. REMARK 100 THE RCSB ID CODE IS RCSB051476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52686 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 49.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CAPS PH 10.4, 18% PEG 3350, REMARK 280 3% MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.28000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.28000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 465 LYS H 223 REMARK 465 SER H 224 REMARK 465 CYS H 225 REMARK 465 ASP H 226 REMARK 465 LYS H 227 REMARK 465 THR H 228 REMARK 465 HIS H 229 REMARK 465 GLU A 211 REMARK 465 CYS A 212 REMARK 465 SER A 213 REMARK 465 LYS B 223 REMARK 465 SER B 224 REMARK 465 CYS B 225 REMARK 465 ASP B 226 REMARK 465 LYS B 227 REMARK 465 THR B 228 REMARK 465 HIS B 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 143 N SER B 195 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS H 96 CB CYS H 96 SG -0.105 REMARK 500 CYS H 205 CB CYS H 205 SG -0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 79 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 50 -48.49 76.10 REMARK 500 ASN L 95 -136.56 60.05 REMARK 500 LEU L 107 101.58 -36.29 REMARK 500 SER L 153 -0.76 63.05 REMARK 500 GLN L 168 -139.17 -82.22 REMARK 500 GLU L 199 104.03 -17.98 REMARK 500 PRO L 209 152.24 -48.15 REMARK 500 GLU H 89 0.41 -66.88 REMARK 500 SER H 136 -121.14 -116.62 REMARK 500 LYS H 138 -55.48 -150.56 REMARK 500 SER H 139 -92.29 -101.33 REMARK 500 THR H 140 179.30 172.69 REMARK 500 ASP H 153 69.48 67.17 REMARK 500 ASP A 50 -47.87 83.66 REMARK 500 ASN A 51 7.93 -152.65 REMARK 500 ASN A 95 -143.82 54.22 REMARK 500 LEU A 107 102.67 78.69 REMARK 500 PRO A 110 56.36 -91.01 REMARK 500 GLN A 127 8.89 -60.10 REMARK 500 ALA A 144 115.99 -38.96 REMARK 500 ASP A 152 78.47 22.97 REMARK 500 SER A 153 -31.12 63.36 REMARK 500 PRO A 165 101.61 -44.48 REMARK 500 GLU A 199 73.62 11.48 REMARK 500 SER A 201 -157.47 -143.88 REMARK 500 SER B 55 29.10 49.83 REMARK 500 ALA B 92 166.90 170.40 REMARK 500 SER B 136 -112.66 -114.97 REMARK 500 ASP B 153 65.02 73.07 REMARK 500 GLN B 180 -175.29 -67.95 REMARK 500 SER B 196 -18.31 -46.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER L 1 TYR L 2 -144.98 REMARK 500 GLY H 199 THR H 200 149.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU B 6 23.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3G6D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN CNTO607 FAB AND IL REMARK 900 -13 REMARK 999 REMARK 999 SEQUENCE REMARK 999 FAB WAS OBTAINED BY PAPAIN CLEAVAGE OF ANTIBODY. DBREF 3G6A L 1 213 PDB 3G6A 3G6A 1 213 DBREF 3G6A H 1 229 PDB 3G6A 3G6A 1 229 DBREF 3G6A A 1 213 PDB 3G6A 3G6A 1 213 DBREF 3G6A B 1 229 PDB 3G6A 3G6A 1 229 SEQRES 1 L 213 SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL ALA SEQRES 2 L 213 PRO GLY GLN THR ALA ARG ILE SER CYS SER GLY ASP ASN SEQRES 3 L 213 ILE GLY GLY THR PHE VAL SER TRP TYR GLN GLN LYS PRO SEQRES 4 L 213 GLY GLN ALA PRO VAL LEU VAL ILE TYR ASP ASP ASN ASP SEQRES 5 L 213 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 L 213 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 L 213 ALA GLU ASP GLU ALA ASP TYR TYR CYS GLY THR TRP ASP SEQRES 8 L 213 MET VAL THR ASN ASN VAL PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 213 THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR SEQRES 10 L 213 LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS SEQRES 11 L 213 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 12 L 213 ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL SEQRES 13 L 213 LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER SEQRES 14 L 213 ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 15 L 213 PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN SEQRES 16 L 213 VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA SEQRES 17 L 213 PRO THR GLU CYS SER SEQRES 1 H 229 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 229 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 229 PHE THR PHE ASN SER TYR TRP ILE ASN TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE ALA SEQRES 5 H 229 TYR ASP SER SER ASN THR LEU TYR ALA ASP SER VAL LYS SEQRES 6 H 229 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 229 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 229 ALA VAL TYR TYR CYS ALA ARG GLY LEU GLY ALA PHE HIS SEQRES 9 H 229 TRP ASP MET GLN PRO ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 229 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 229 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 229 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 229 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 229 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 229 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 229 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 229 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 229 PRO LYS SER CYS ASP LYS THR HIS SEQRES 1 A 213 SER TYR GLU LEU THR GLN PRO PRO SER VAL SER VAL ALA SEQRES 2 A 213 PRO GLY GLN THR ALA ARG ILE SER CYS SER GLY ASP ASN SEQRES 3 A 213 ILE GLY GLY THR PHE VAL SER TRP TYR GLN GLN LYS PRO SEQRES 4 A 213 GLY GLN ALA PRO VAL LEU VAL ILE TYR ASP ASP ASN ASP SEQRES 5 A 213 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 A 213 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 A 213 ALA GLU ASP GLU ALA ASP TYR TYR CYS GLY THR TRP ASP SEQRES 8 A 213 MET VAL THR ASN ASN VAL PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 213 THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL THR SEQRES 10 A 213 LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS SEQRES 11 A 213 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 12 A 213 ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL SEQRES 13 A 213 LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER SEQRES 14 A 213 ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 15 A 213 PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN SEQRES 16 A 213 VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA SEQRES 17 A 213 PRO THR GLU CYS SER SEQRES 1 B 229 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 229 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 229 PHE THR PHE ASN SER TYR TRP ILE ASN TRP VAL ARG GLN SEQRES 4 B 229 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE ALA SEQRES 5 B 229 TYR ASP SER SER ASN THR LEU TYR ALA ASP SER VAL LYS SEQRES 6 B 229 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 B 229 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 B 229 ALA VAL TYR TYR CYS ALA ARG GLY LEU GLY ALA PHE HIS SEQRES 9 B 229 TRP ASP MET GLN PRO ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 B 229 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 B 229 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 B 229 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 B 229 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 B 229 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 B 229 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 B 229 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 B 229 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 B 229 PRO LYS SER CYS ASP LYS THR HIS FORMUL 5 HOH *270(H2 O) HELIX 1 1 ASN L 26 THR L 30 5 5 HELIX 2 2 GLN L 78 GLU L 82 5 5 HELIX 3 3 SER L 122 ALA L 128 1 7 HELIX 4 4 THR L 182 HIS L 189 1 8 HELIX 5 5 THR H 28 TYR H 32 5 5 HELIX 6 6 ARG H 87 THR H 91 5 5 HELIX 7 7 PHE H 103 MET H 107 5 5 HELIX 8 8 SER H 165 ALA H 167 5 3 HELIX 9 9 SER H 196 LEU H 198 5 3 HELIX 10 10 LYS H 210 ASN H 213 5 4 HELIX 11 11 ASN A 26 THR A 30 5 5 HELIX 12 12 GLN A 78 GLU A 82 5 5 HELIX 13 13 SER A 122 GLN A 127 1 6 HELIX 14 14 THR A 182 HIS A 189 1 8 HELIX 15 15 THR B 28 TYR B 32 5 5 HELIX 16 16 ASP B 62 LYS B 65 5 4 HELIX 17 17 ARG B 87 THR B 91 5 5 HELIX 18 18 PHE B 103 MET B 107 5 5 HELIX 19 19 SER B 165 ALA B 167 5 3 HELIX 20 20 SER B 196 LEU B 198 5 3 HELIX 21 21 LYS B 210 ASN B 213 5 4 SHEET 1 A 5 SER L 9 VAL L 12 0 SHEET 2 A 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 10 SHEET 3 A 5 ALA L 83 ASP L 91 -1 N ALA L 83 O LEU L 104 SHEET 4 A 5 SER L 33 GLN L 37 -1 N GLN L 37 O ASP L 84 SHEET 5 A 5 VAL L 44 ILE L 47 -1 O ILE L 47 N TRP L 34 SHEET 1 B 4 SER L 9 VAL L 12 0 SHEET 2 B 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 10 SHEET 3 B 4 ALA L 83 ASP L 91 -1 N ALA L 83 O LEU L 104 SHEET 4 B 4 ASN L 95 PHE L 98 -1 O ASN L 95 N ASP L 91 SHEET 1 C 3 ALA L 18 SER L 23 0 SHEET 2 C 3 THR L 69 ILE L 74 -1 O ALA L 70 N CYS L 22 SHEET 3 C 3 PHE L 61 SER L 66 -1 N SER L 62 O THR L 73 SHEET 1 D 4 SER L 115 PHE L 119 0 SHEET 2 D 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 D 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 D 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 E 4 SER L 115 PHE L 119 0 SHEET 2 E 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 E 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 E 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 F 4 SER L 154 VAL L 156 0 SHEET 2 F 4 VAL L 145 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 F 4 TYR L 192 HIS L 198 -1 O THR L 197 N THR L 146 SHEET 4 F 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SHEET 1 G 4 GLN H 3 SER H 7 0 SHEET 2 G 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 G 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 G 4 PHE H 68 ASP H 73 -1 N THR H 69 O GLN H 82 SHEET 1 H 6 LEU H 11 VAL H 12 0 SHEET 2 H 6 THR H 116 VAL H 120 1 O THR H 119 N VAL H 12 SHEET 3 H 6 ALA H 92 GLY H 99 -1 N TYR H 94 O THR H 116 SHEET 4 H 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 H 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 H 6 THR H 58 TYR H 60 -1 O LEU H 59 N GLY H 50 SHEET 1 I 4 LEU H 11 VAL H 12 0 SHEET 2 I 4 THR H 116 VAL H 120 1 O THR H 119 N VAL H 12 SHEET 3 I 4 ALA H 92 GLY H 99 -1 N TYR H 94 O THR H 116 SHEET 4 I 4 PRO H 109 TRP H 112 -1 O ASP H 110 N ARG H 98 SHEET 1 J 4 SER H 129 LEU H 133 0 SHEET 2 J 4 THR H 144 TYR H 154 -1 O LEU H 150 N PHE H 131 SHEET 3 J 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 154 SHEET 4 J 4 VAL H 172 THR H 174 -1 N HIS H 173 O VAL H 190 SHEET 1 K 4 SER H 129 LEU H 133 0 SHEET 2 K 4 THR H 144 TYR H 154 -1 O LEU H 150 N PHE H 131 SHEET 3 K 4 TYR H 185 PRO H 194 -1 O TYR H 185 N TYR H 154 SHEET 4 K 4 VAL H 178 LEU H 179 -1 N VAL H 178 O SER H 186 SHEET 1 L 3 THR H 160 TRP H 163 0 SHEET 2 L 3 ILE H 204 HIS H 209 -1 O ASN H 206 N SER H 162 SHEET 3 L 3 THR H 214 LYS H 219 -1 O VAL H 216 N VAL H 207 SHEET 1 M 5 SER A 9 VAL A 12 0 SHEET 2 M 5 THR A 102 VAL A 106 1 O LYS A 103 N VAL A 10 SHEET 3 M 5 ALA A 83 ASP A 91 -1 N ALA A 83 O LEU A 104 SHEET 4 M 5 SER A 33 GLN A 37 -1 N GLN A 37 O ASP A 84 SHEET 5 M 5 VAL A 44 ILE A 47 -1 O ILE A 47 N TRP A 34 SHEET 1 N 4 SER A 9 VAL A 12 0 SHEET 2 N 4 THR A 102 VAL A 106 1 O LYS A 103 N VAL A 10 SHEET 3 N 4 ALA A 83 ASP A 91 -1 N ALA A 83 O LEU A 104 SHEET 4 N 4 ASN A 95 PHE A 98 -1 O VAL A 97 N THR A 89 SHEET 1 O 3 ALA A 18 SER A 23 0 SHEET 2 O 3 THR A 69 ILE A 74 -1 O ILE A 74 N ALA A 18 SHEET 3 O 3 PHE A 61 SER A 66 -1 N SER A 62 O THR A 73 SHEET 1 P 4 SER A 115 PHE A 119 0 SHEET 2 P 4 ALA A 131 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 P 4 TYR A 173 LEU A 181 -1 O SER A 177 N CYS A 135 SHEET 4 P 4 VAL A 160 THR A 162 -1 N GLU A 161 O TYR A 178 SHEET 1 Q 4 SER A 115 PHE A 119 0 SHEET 2 Q 4 ALA A 131 PHE A 140 -1 O LEU A 136 N THR A 117 SHEET 3 Q 4 TYR A 173 LEU A 181 -1 O SER A 177 N CYS A 135 SHEET 4 Q 4 SER A 166 LYS A 167 -1 N SER A 166 O ALA A 174 SHEET 1 R 4 SER A 154 PRO A 155 0 SHEET 2 R 4 THR A 146 ALA A 151 -1 N ALA A 151 O SER A 154 SHEET 3 R 4 TYR A 192 HIS A 198 -1 O THR A 197 N THR A 146 SHEET 4 R 4 SER A 201 VAL A 207 -1 O VAL A 203 N VAL A 196 SHEET 1 S 4 GLN B 3 SER B 7 0 SHEET 2 S 4 LEU B 18 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 S 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 S 4 PHE B 68 ASP B 73 -1 N ASP B 73 O THR B 78 SHEET 1 T 6 GLY B 10 VAL B 12 0 SHEET 2 T 6 THR B 116 VAL B 120 1 O THR B 119 N VAL B 12 SHEET 3 T 6 ALA B 92 GLY B 99 -1 N ALA B 92 O VAL B 118 SHEET 4 T 6 ILE B 34 GLN B 39 -1 N VAL B 37 O TYR B 95 SHEET 5 T 6 LEU B 45 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 T 6 THR B 58 TYR B 60 -1 O LEU B 59 N GLY B 50 SHEET 1 U 4 GLY B 10 VAL B 12 0 SHEET 2 U 4 THR B 116 VAL B 120 1 O THR B 119 N VAL B 12 SHEET 3 U 4 ALA B 92 GLY B 99 -1 N ALA B 92 O VAL B 118 SHEET 4 U 4 PRO B 109 TRP B 112 -1 O ASP B 110 N ARG B 98 SHEET 1 V 4 SER B 129 LEU B 133 0 SHEET 2 V 4 THR B 144 TYR B 154 -1 O LYS B 152 N SER B 129 SHEET 3 V 4 TYR B 185 PRO B 194 -1 O LEU B 187 N VAL B 151 SHEET 4 V 4 VAL B 172 THR B 174 -1 N HIS B 173 O VAL B 190 SHEET 1 W 4 SER B 129 LEU B 133 0 SHEET 2 W 4 THR B 144 TYR B 154 -1 O LYS B 152 N SER B 129 SHEET 3 W 4 TYR B 185 PRO B 194 -1 O LEU B 187 N VAL B 151 SHEET 4 W 4 VAL B 178 LEU B 179 -1 N VAL B 178 O SER B 186 SHEET 1 X 3 THR B 160 TRP B 163 0 SHEET 2 X 3 TYR B 203 HIS B 209 -1 O ASN B 206 N SER B 162 SHEET 3 X 3 THR B 214 VAL B 220 -1 O VAL B 220 N TYR B 203 SSBOND 1 CYS L 22 CYS L 87 1555 1555 2.05 SSBOND 2 CYS L 135 CYS L 194 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.21 SSBOND 4 CYS H 149 CYS H 205 1555 1555 2.04 SSBOND 5 CYS A 22 CYS A 87 1555 1555 2.06 SSBOND 6 CYS A 135 CYS A 194 1555 1555 2.07 SSBOND 7 CYS B 22 CYS B 96 1555 1555 2.21 SSBOND 8 CYS B 149 CYS B 205 1555 1555 2.05 CISPEP 1 TYR L 141 PRO L 142 0 1.96 CISPEP 2 PHE H 155 PRO H 156 0 -10.03 CISPEP 3 GLU H 157 PRO H 158 0 -10.06 CISPEP 4 TYR A 141 PRO A 142 0 -21.48 CISPEP 5 PHE B 155 PRO B 156 0 -9.27 CISPEP 6 GLU B 157 PRO B 158 0 -2.95 CRYST1 108.050 108.050 78.560 90.00 90.00 90.00 P 42 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009255 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012729 0.00000